Typing tool
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Typing tool
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Complete norovirus genomes
| PZ530894 | GII.17 | |
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| GII.P17 |
ORF1: 1..5109
ORF2: 5090..6706
ORF3: 6706..7485
LOCUS PZ530894 7490 bp RNA linear VRL 17-JUN-2026
DEFINITION Norovirus GII isolate HU/GII.17[P17]/TX0026/2026/USA nonstructural
polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION PZ530894
VERSION PZ530894.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7490)
AUTHORS Gehlbach,D., Sciulli,M., Montmayeur,A.M., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (11-JUN-2026) Viral Gastroenteritis Branch, Division of
Viral Diseases, Centers for Disease Control and Prevention, 1600
Clifton Road NE, Atlanta/GA, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CN 2.0 Pipeline v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7490
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="HU/GII.17[P17]/TX0026/2026/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: TX"
/collection_date="28-Apr-2026"
/note="genotype: GII.17[P17"
gene 1..5109
/gene="ORF1"
CDS 1..5109
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YFF64694.1"
/translation="MKMASNDASAAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGAR
SKQPPPEETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVA
QPDAQNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDV
IGKLKPLNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMKTLDLEEEKARK
LSSKSASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
KTLDELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNAIVQTNNELAGALH
HLRSARIRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDK
GGCPKPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..999
/gene="ORF1"
/product="p48"
mat_peptide 1000..2097
/gene="ORF1"
/product="NTPase"
mat_peptide 2098..2634
/gene="ORF1"
/product="p22"
mat_peptide 2635..3033
/gene="ORF1"
/product="VPg"
mat_peptide 3034..3576
/gene="ORF1"
/product="Pro"
mat_peptide 3577..5106
/gene="ORF1"
/product="RdRp"
gene 5090..6706
/gene="ORF2"
CDS 5090..6706
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YFF64695.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSYDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6706..7485
/gene="ORF3"
CDS 6706..7485
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YFF64696.1"
/translation="MAGAFIAGLAGDMFTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSPSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSSSSQNRTAEWVSQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac
61 aatgtaaaat cttcaagtga cagcttgttt tctaacatga ctgttacttt taagaaagcc
121 ctcggggcgc ggtctaagca gccgcccccg gaagaaacaa aacaaacact aagaccacca
181 aggccgccga caccggaatt ggtgaagaag atacccccac ccccccccaa tggcgaggat
241 gaaccaaagg taacgtataa ggtgggagaa ggtgtgtctg ggctgcccga cttaacaacc
301 gtggcacaac ctgacgcaca gaacacagcc tatagtgtcc ccccacttag ccagagagag
361 gtcggcgaag ctagagaacc gttgcctggc tccattctgg aaatgtggga tggtgagatc
421 taccactatg ggctgtatgt tgagcggggg catgtgctgg gagtgcacaa accacctgct
481 gcaataagcc ttgccaaaat tgagttaaca ccgctgtctc tctactggag agtggtctac
541 actccccagt acttgatagc tccagagacc ctcaagaatt taaatggaga gactttccca
601 tacacggcct ttgacaacaa ctgttatgcc ttctgttgtt gggttctgga cctcaacgac
661 tcctggctta gtagaagaat ggtccaaaga acaaccggat tcttcagacc gtatcaggac
721 tggaacagaa aacccttacc aaccatggat gaaccaaaaa tcaagaaggc cgcgaatgct
781 gttctgtgtg ctctctcctc actcttcact aggcccatca aagatgtcat tggaaagctt
841 aaaccactaa acattatgaa catactggca acttgtgatt ggacttttgc gggcatagtg
901 gaatccatga tccttcttgc tgaactcttt ggggtgttct ggacgccccc agatgtgtct
961 gcaataattg ctcccttact cggtgactac gagatgcaag gccccgaaga cctggccgtg
1021 gaacttgtgc ccgtggtaat gggaggaata ggtttggtgt taggattcac caaggaaaag
1081 atcggcaaga tgctttcatc agctgcaacc acactcaggg cctgtaagga tctaggatct
1141 tatgggttgg agatactcaa actggtcatg aagtggttct ttcccaagaa ggaggaggcc
1201 aacgagttag ccatggtgag ggccattgag gatgcagtcc tggatttgga ggcaatagaa
1261 aacaatcaca tgaccactct ccttaaggac aaagacgccc tggccacata tatgaagact
1321 cttgacttgg aagaagaaaa agcaaggaaa ctatcttcca aatcggcgtc acctgacatc
1381 gtgggcacag taaacgcatt attggcaaga atagcagccg ccaggtcact ggtccacaag
1441 gctaaggagg agctctcgag cagacagaga cctgttgttg taatgatatc aggtaggcca
1501 ggtataggaa agacccatct ggccagagag ctagccaaga aggttgcgtc aacactgtca
1561 ggcgaccaaa ggattggact gatacccaga aatggcgtcg accattggga cgcctacaaa
1621 ggagagcggg tggttctgtg ggatgactat ggcatgagca accctataca ggacgcactg
1681 aggctccaag aattggctga cacctgtcct ctgaccctaa attgtgacag aattgaaaac
1741 aaaggaaaag tgttcgacag tgacgccata atcataacga ccaaccttgc aaacccagca
1801 ccattggatt atgtcaactt tgaggcttgt tccagacgca tagacttctt ggtgtatgca
1861 gacgcacctg acattgagaa ggctaagcgt gacttccctg gccaaccaga tatgtggaaa
1921 gaccattaca gaccagactt ctcacacatt aaacttcagc tcgcaccaca gggaggcttt
1981 gataagagtg gcaacacccc acatggcaaa ggtgtggtta agtctctgac gattggttct
2041 ctgatcgcca gggcttctgg cttgctccat gagagaatgg atgaattcga gctccaaggc
2101 cccaacttgc caaccttcaa tttcgaccgt aacaaagtcg ccgccttcag acaattggca
2161 gctgaaaaca aatacggtct tatggacaca ctgagggtcg gcaaccaact gaaaagtgtc
2221 aaaaccctgg atgagctgaa gcaggctata aagaacatca ccatcaagaa gtgccagata
2281 gtgtacaatg gatgcaccta taccatggaa tctgatggga ggaacaaggt tgtggttgaa
2341 aaggttcaaa atgcaatagt ccaaaccaac aatgaacttg caggagcact ccaccacctg
2401 agatctgcaa gaataaggta ttatgtcaaa tgtttccaag aagctattta ctctatactc
2461 caaattgctg gtgcagcctt cgtcaccaca cgcatcgtga ggcgcatgaa catctcaaac
2521 ctctggtcga agccacccgt cgaagagggt gatgaacctg aagacaaagg ggggtgcccc
2581 aagcccaggg atgaagatga cctcactatt gactccaaag acattaaagc agaaggtaag
2641 aagggcaaga acaaatctgg ccggggcaag aaacacacag ctttctcatc caagggcctc
2701 agtgatgaag agtacgatga gtacaagaga atcagggagg agagaaatgg caagtactca
2761 atagaagaat acctccagga tagggataga tactatgaag agcttgccat tgctaaagcc
2821 actgaggaag acttctgtga agaggaggaa atcaaaattc gccagagaat cttccggccc
2881 accaggaagc agcggaaaga ggaaagagcc acgcttgggc tcgtcacagg atcggaaatc
2941 agaaagagga acccagatga ttttaagcca aaaggaaaac tgtgggctga tgacaacagg
3001 agtgtggact acaatgagag gatagatttt gaggctcccc caagtgtttg gtctaggata
3061 gtcaactttg gtacagggtg gggattctgg gtctccccaa gtctctttat aacttcaaca
3121 catgtcatac caaaaggaat cactgaggcc tttggagttc ccattaacca aattcaaatt
3181 cacaaatctg gagagttttg ccgcttgcgg tttccaaaac caatcaggcc agacgtgagt
3241 ggaatgatct tggaagaggg tgcccctgaa ggcactgttg tttccattct catcaagagg
3301 acgacagggg aactgatgcc tctcgcagtc agaatgggaa ctcatgccac aatgaaaatc
3361 caaggtagga cggtgggcgg tcaaatgggc atgcttctca ctggctcaaa cgccaaaagc
3421 atggacctag gcacaacacc aggtgactgt gggtgcccat acatatataa aaggggcaat
3481 gacttcgtgg tcattggggt gcacactgca gcagcccgtg gaggtaacac ggtcatatgt
3541 gccacacagg ggagtgaagg cgaagccacc ctcgaaggag gtgacaacaa gggcacctat
3601 tgtggggccc ccatcttggg tcctggcaac gcaccaaaat tgagcacaaa aacaaaattc
3661 tggagatctt ctaacgcgcc gctcccgcca ggcacctatg aaccagcata ccttggtgga
3721 aaagacccgc gtgtgaaggg aggcccatct ctacaacagg ttatgagaga ccaactcaaa
3781 ccttttacag agcccagggg gaaaccacca aaaccaagtg tcctagaatc agcaaagaag
3841 accatcatta atgttctgga acaaaccatt gacccccctg aaaagtggtc atatgcccaa
3901 gcttgtgcat ccctcgacaa gacaacctcc agtggatacc cgcatcacgt ccggaagaat
3961 gactactgga gtggtgaatc tttcacgggg aaacttgcgg accaggcctc aaaagcaaat
4021 ctcatgtatg aggaaggtaa gcacatgcaa ccagtttaca ccgcagcact caaagacgag
4081 ctcgtgaaaa ctgacaaaat ttatggcaag atcaagaaaa gactcctgtg gggctctgac
4141 ctatccacca tgattcggtg cgccagggca tttggtggcc tcatggacga gctcaaagca
4201 aattgtatca cactccctat cagagttggt atgaacatga atgaagatgg tcccataata
4261 tttgaaaagc actccaggta caggtaccac tatgatgctg attattcccg ctgggattcc
4321 acacaacagc gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag
4381 ccacaattgg cacaaatagt ggcagaggac ctgctatcac caagtgtggt tgacgtgggc
4441 gatttcaaaa ttactattaa tgaaggccta ccatctggcg tgccttgcac ttcacaatgg
4501 aattctattg cccactggtt actcacccta tgtgccctgt ctgaagtgac aggactaggc
4561 cctgacatca tacaagccaa ctccatgtac tctttctatg gtgatgatga gatagtgagc
4621 acagacataa aattagaccc agagaaattg actgcaaaac tcaaagaata tggtcttaaa
4681 cccacccggc ctgacaagac tgaggggcca ctggtaatta gtgaggacct gaatgggttg
4741 actttcctcc gccgaacagt cacccgcgat ccagcgggtt ggtttggaaa gttggaccaa
4801 aactccatcc tcagacagct gtactggaca aggggaccca accatgaaga ccccagtgag
4861 actatgatac cacacgcaca gagacctgtg cagctcatgg cattgctcgg agaatcctcc
4921 ctacatggac cctcatttta cagcaaggtt agtaagctgg ttatatctga acttaaagag
4981 ggaggaatgg atttttatgt gcccagacaa gagtcaatgt tcaggtggat gaggttctca
5041 gatctaagca catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc
5101 gtcgaatgac gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaataa
5161 cgagaccctt cccctagaac cagttgcggg cgcagccata gccgcacccg tcactggcca
5221 aaataatata attgacccct ggattagaac aaattttgtg caagcaccaa atggagagtt
5281 cacagtgtca cccagaaact ctcctggaga aattttacta aacctagagt tgggccctga
5341 tctgaaccct tatttggctc atttgtcaag gatgtataat ggatatgctg gtggggttga
5401 agtccaggtt ctcctggcag ggaacgcgtt cactgccggg aagatcctct tcgccgctgt
5461 cccgccaaat tttccggtgg aattcttaag cccagcccag attacaatgc tcccacatat
5521 aatagtagat gttaggactc ttgaaccaat tatgattcca ttacctgatg ttaggaatac
5581 attcttccat tataataatc agcccaacag ccgcatgaga ttagtggcta tgctctacac
5641 cccccttaga tctaatggct caggtgatga tgttttcact gtttcttgca gggttttgac
5701 taggcctact cctgattttg agttcactta tctagtgcca ccctctgttg aatctaagac
5761 caaacccttt tctttaccca ttctaaccct ttctgagctc acaaattcaa ggttcccggt
5821 ccccatcgat tcgcttttca ccgcccaaaa taatgtgttg caggtgcagt gtcaaaatgg
5881 caggtgcaca cttgacggtg agctacaagg cacaacccag ttgctcccat ctggcatctg
5941 tgcgttcagg ggacgggtga cagcagaaac tgacaaccct gacaagtggc acatgcaact
6001 gcaaaatctc aatggcacaa catatgaccc aactgatgat gtgccagccc cactgggtac
6061 acctgacttc aagggcgtcg tgtttgggat ggcaagccaa agaaatgtgg gtaacgacgc
6121 gcccggctca accaggtccc atgaggcggt gatttcaacc tacagcccca gatttgttcc
6181 taaattaggt tctgtcaatt tcaaaagcta tgacgatgat ttccaattgc agccaacaag
6241 attcacacca gtgggcatta atgatgatgg caaccaacca ttcagacaat gggaactacc
6301 agattattca ggggtgctta ccttgaatat gaaccttgcc ccccctgttg ccccaaattt
6361 ccccggcgaa caattactat tcttcagatc ttctgtgcca tgttcaggag gttataacca
6421 aggtattata gattgcctta tcccccaaga atggatccaa catttctacc aggaatcagc
6481 accttctcag tcagaagtgg ccctaatcag gtacgtcaac cccgacacgg gtcgtacact
6541 gtttgaggca aaattgcata ggtcaggcta tatcactgtg gctcattctg gagactatcc
6601 tcttgttgtt ccggctaatg gatactttag atttgactct tgggtaaatc agttttactc
6661 actcgcccca atgggaactg ggaatgggcg aagaagggct cagtaatggc tggagctttc
6721 attgcaggat tagcgggtga catgttcacg tcatccgtgg gctccctggt gaacgcaggg
6781 gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca gtctgcttcc
6841 tttcaacatg ataaagagat gctccaagcg caggtgaacg caaccaagca gctgcaatct
6901 gagatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc cactgatgca
6961 gcgagggggg ccatcggtgc acccatgaca aaggtgcttg actggtctgg cactcgatac
7021 tgggctccca actccacaaa gacaactggt tattcggggc aattcacctc ttcacctgtg
7081 cacatgccca gcccgagtgt cccacaatca aaacccgcaa agcccaagtc tctaggttct
7141 ccttcttctt ctagtagtgt ttacagtatg tctacccaat taacttctct aacatctggc
7201 tcttctagca atgcttcttc tgcttctaca aaattgacaa atttgagctc cagctcttct
7261 caaaacagaa cagcagagtg ggtgagccaa cagagaagtc tcagtccttt catgagtggc
7321 gcactcaata tctcgcatgt cacgccacct tcaagtaggg cctccagttc tgggacggtc
7381 tcaaccgtgc ccaaggaagt tttggactcc tggacatctg cattcaacac acgcagacag
7441 ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa
//