Typing tool
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Typing tool
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Complete norovirus genomes
| PZ530891 | GII.17 | |
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| GII.P17 |
ORF1: 1..5109
ORF2: 5090..6706
ORF3: 6706..7485
LOCUS PZ530891 7490 bp RNA linear VRL 17-JUN-2026
DEFINITION Norovirus GII isolate HU/GII.17[P17]/TX0021/2026/USA nonstructural
polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION PZ530891
VERSION PZ530891.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7490)
AUTHORS Gehlbach,D., Sciulli,M., Montmayeur,A.M., Barclay,L., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (11-JUN-2026) Viral Gastroenteritis Branch, Division of
Viral Diseases, Centers for Disease Control and Prevention, 1600
Clifton Road NE, Atlanta/GA, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CN 2.0 Pipeline v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7490
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="HU/GII.17[P17]/TX0021/2026/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: TX"
/collection_date="31-Mar-2026"
/note="genotype: GII.17[P17"
gene 1..5109
/gene="ORF1"
CDS 1..5109
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YFF64685.1"
/translation="MKMASNDASAAVAGKNNNNDNEKSSSNSLFSNMTVNFKKALGAR
SKQPPPGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVA
QPDAQNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDV
IGKLKPLNIVNILATCDWTFAGLVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLIMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHLTNLLKDKDALATYMRTLDLEEEKARK
LSSKSASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
VEKAKRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
KTLDELKQAIKNITIKKCQIVYSGFTYTVESDGRNKVVVEKVQNATVQTNNELAGALH
HLRSARIRYYVKCFQEAIYSILQIAGAAFVTTRIVKRMNISNLWSKPPVEEGDEPEDK
GGCPKPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYEEYKRLREE
RSGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERTML
GLVTGSEIRKRNPDDFKPRGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCHLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT
PGDCGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPF
TEPRGKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDELKANCITLPIRVGMSMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHGDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..999
/gene="ORF1"
/product="p48"
mat_peptide 1000..2097
/gene="ORF1"
/product="NTPase"
mat_peptide 2098..2634
/gene="ORF1"
/product="p22"
mat_peptide 2635..3033
/gene="ORF1"
/product="VPg"
mat_peptide 3034..3576
/gene="ORF1"
/product="Pro"
mat_peptide 3577..5106
/gene="ORF1"
/product="RdRp"
gene 5090..6706
/gene="ORF2"
CDS 5090..6706
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YFF64686.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEVLLSLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMKLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGVLLGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDRPGSTRSHEAVISTYSPRFVPKLGSVNFKSDDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSYVPCSGGYNQGIIDCL
IPQEWVQHFYQESAPSQSDVALVRYTNPDTGRTLFEAKLHKSGYITVAHSGDYPLVVP
ANGYFRFDSWVSPFYSLAPMGTGNGRRRAQ"
gene 6706..7485
/gene="ORF3"
CDS 6706..7485
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YFF64687.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLRAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKPPGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKSTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac
61 aatgaaaaat cttcaagtaa cagcttgttt tccaacatga ctgttaattt taagaaagcc
121 ctcggggcgc ggtctaagca gccgcccccg ggagaaacaa aacaaacact aagaccacca
181 aggccgccga caccggaatt ggtgaagaag atacccccac ccccccccaa tggcgaggat
241 gaaccaaagg tgacgtataa ggtgggagaa ggtgtgtctg ggctgcccga cttaacaacc
301 gtggcacaac ctgacgcaca gaacacagcc tatagtgtcc ccccacttag ccagagagag
361 gtcggcgaag ccagagaacc gttgcctggc tctattctgg aaatgtggga tggtgagatc
421 taccactatg ggctgtatgt tgagcggggg catgtgctag gagtgcacaa accacctgct
481 gcaataagcc ttgccaaaat tgagttaaca ccgctgtctc tctactggag agtggtctac
541 actccccagt acttgatagc tccagagacc ctcaagaatt tgaatggaga gactttccca
601 tacacggcct ttgacaacaa ctgttatgcc ttctgttgtt gggttctgga cctcaacgac
661 tcctggctta gcagaagaat ggtccaaaga acaaccggat tcttcagacc gtatcaggac
721 tggaacagaa aacccttgcc aaccatggat gaaccaaaaa tcaagaaggc cgcgaatgct
781 gttctgtgtg ccctctcctc actcttcact aggcccatca aagatgtcat tggaaagctt
841 aaaccactaa acattgtgaa catactggca acttgtgatt ggacttttgc gggcttagta
901 gaatccatga tccttcttgc tgaactcttt ggggtgttct ggacgccccc agatgtgtct
961 gcaataattg ctcccttact cggtgactac gagatgcaag gccccgaaga cctggccgtg
1021 gaacttgtgc ccgtagtaat gggaggaata ggtttggtgt taggattcac caaggaaaag
1081 atcggcaaga tgctttcatc agctgcaacc acactcaggg cctgtaagga tctaggatct
1141 tatgggttgg agatactcaa actgatcatg aagtggttct tccccaagaa ggaggaggcc
1201 aacgagttag ccatggtgag ggccattgag gatgcagttc tggatttgga ggcaatagaa
1261 aacaaccact tgaccaatct ccttaaggac aaagacgccc tggccacata tatgagaact
1321 cttgacttgg aagaagaaaa agcaaggaaa ctatcttcta aatcggcgtc gcctgacatt
1381 gtgggcacag taaacgcatt attggcaaga atagcagccg ccaggtcact ggttcacaag
1441 gctaaggagg agctctcgag cagacagaga cctgttgttg taatgatatc aggtaggcca
1501 ggtataggaa agacccatct ggccagagag ctagccaaga aggttgcgtc aacactgtca
1561 ggcgaccaaa ggattggact gatacccaga aatggcgtcg accattggga cgcctacaaa
1621 ggagagcggg tggttctgtg ggatgactat ggcatgagca accctataca ggacgcactg
1681 aggctccaag aattggctga cacctgccct ctgaccctga attgtgacag aattgaaaac
1741 aaaggaaaag tgttcgacag tgacgccata atcataacga ccaaccttgc aaacccagca
1801 ccattggatt atgtcaactt tgaggcttgt tccagacgca tagacttctt ggtgtatgca
1861 gacgcacctg acgtcgagaa ggctaagcgt gatttccctg gccaaccaga tatgtggaaa
1921 gaccattaca gaccagactt ctcacatatt aagcttcagc tcgcaccaca gggaggcttt
1981 gataagagtg gtaacacccc acatggcaaa ggtgtggtta agtctctgac gattggttct
2041 ctgatcgcca gggcttctgg cttgctccat gagagaatgg atgaattcga gctccaaggc
2101 cccaacttac caaccttcaa tttcgaccgt aacaaagtcg ccgccttcag acaattggca
2161 gctgaaaaca aatacggtct tatggacaca ctgagggtcg gcaaccaact gaaaagtgtc
2221 aaaaccctgg acgagctgaa gcaggctata aagaacatta ccatcaagaa gtgccagata
2281 gtgtacagtg gattcaccta caccgtggaa tctgatggga ggaacaaggt tgtggttgaa
2341 aaggttcaaa atgcaacagt ccaaaccaac aatgagcttg caggagcact ccaccacctg
2401 agatctgcaa gaataaggta ttatgtcaaa tgtttccaag aagctattta ctctatactc
2461 caaattgctg gtgcagcctt cgtcaccaca cgcatcgtga agcgtatgaa catctcaaac
2521 ctctggtcga agccacccgt cgaagagggt gatgagcctg aagataaagg ggggtgcccc
2581 aagcccaggg atgaagatga cctcactatt gactccaaag acatcaaagc agaaggtaag
2641 aagggcaaga acaaatctgg ccggggcaag aaacacacag ctttctcatc caagggcctc
2701 agtgatgaag agtacgagga gtacaagaga ctcagggagg agagaagtgg caagtactca
2761 atagaagaat acctccagga tagggataga tactatgaag agcttgccat tgctaaggcc
2821 actgaggaag acttctgtga agaggaggaa atcaaaattc gccagagaat cttccggccc
2881 accaggaaac agcggaaaga ggaaaggacc atgcttgggc tcgtcacagg atcggaaatc
2941 agaaagagga acccagatga ttttaagcca agaggaaaat tgtgggctga tgacaacaga
3001 agtgtggact acaatgagag gatagatttt gaggctcccc caagtgtttg gtctaggata
3061 gtcaactttg gtacagggtg gggattctgg gtctccccaa gtctctttat aacttcaaca
3121 catgtcatac caaaaggaat cactgaggcc tttggagttc ccattaacca aattcaaatt
3181 cacaaatctg gagagttttg ccacttgcgg tttccaaaac caatcaggcc agacgtaagt
3241 ggaatgatct tggaagaggg tgcccctgaa ggcactgttg tttccattct catcaagagg
3301 acgacagggg aactgatgcc tctcgcagtc agaatgggaa ctcatgccac aatgaaaatc
3361 caaggtagaa cggtgggcgg tcaaatgggc atgcttctca ctggctcaaa cgccaaaagc
3421 atggacctag gcacaacacc aggtgactgt gggtgcccat acatatacaa aaggggcaat
3481 gacttcgtgg tcattggggt gcacactgca gcagcccgtg gaggtaacac ggtcatatgt
3541 gccacacagg ggagtgaagg cgaagccacc ctcgaaggag gtgacaacaa gggcacctat
3601 tgtggagccc ccatcttggg tcctggcaac gcaccaaaat tgagcacaaa aacaaaattc
3661 tggagatctt ctaacgcgcc gctcccgcca ggcacctatg aaccagcata ccttggtgga
3721 aaagacccgc gtgtgaaggg gggcccatct ctacaacagg ttatgagaga acaactcaaa
3781 ccttttacag agcccagagg gaagccacca aaaccaagtg tcctagaatc agcaaagaag
3841 accatcatta atgttctgga acaaaccatt gacccccctg aaaagtggtc atatgcccaa
3901 gcttgtgcat ccctcgacaa gacaacctcc agtggatacc cgcatcacgt ccggaagaat
3961 gactactgga gtggtgaatc cttcacgggg aaacttgcag accaggcctc aaaagcaaat
4021 ctcatgtatg aggaaggtaa gcacatgcaa ccagtttaca ccgcagcact caaagacgag
4081 ctcgtgaaaa ctgacaaaat ttatggcaag atcaagaaaa gactcctgtg gggctctgac
4141 ctatccacca tgattcggtg cgccagggca tttggtggcc tcatggacga gctcaaagca
4201 aattgtatca cactccctat cagagttggt atgagcatga atgaagatgg tcccataata
4261 tttgaaaagc actccaggta caggtaccac tatgatgctg attattcccg ctgggattcc
4321 acacaacagc gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag
4381 ccacagttgg cacaaatagt ggcagaggac ctgctatcac caagtgtggt tgatgtgggc
4441 gatttcaaaa ttgctattaa tgaaggccta ccatctggcg tgccttgcac ttcacaatgg
4501 aattctattg cccactggtt actcacccta tgtgccctgt ctgaagtgac aggactaggc
4561 cctgacatca tacaagccaa ctccatgtac tctttctatg gtgatgatga gattgtgagc
4621 acagacataa aattagaccc agagaaattg actgcaaaac tcaaagaata tggtcttaaa
4681 cccacccggc ctgacaagac tgaggggcca ctggtaatta gtgaggatct gaatgggttg
4741 actttcctcc gccgaacagt cacccgcgat ccagcgggtt ggtttggaaa gttggaccaa
4801 aactccatcc tcagacagct gtactggaca aggggaccca accatggaga ccccagtgag
4861 actatgatac cacacgcaca gagacctgtg cagctcatgg cattgctagg agaatcctcc
4921 ctacatggac cctcatttta cagcaaggtt agcaagctgg ttatatctga acttaaagag
4981 ggaggaatgg atttttatgt gcccaggcaa gagccaatgt tcaggtggat gaggttctca
5041 gacctaagca catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc
5101 gtcgaatgac gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaataa
5161 cgagaccctt cccctagaac cagttgcggg cgcagccata gccgcacccg tcactggcca
5221 aaataatata attgacccct ggattagaac aaattttgtg caagcaccaa atggagagtt
5281 cacagtgtca cccagaaact ctcctggaga agttttacta agcctagagt tgggccctga
5341 tctgaaccct tatttggctc atttgtcaag gatgtataat ggatatgctg gtggagttga
5401 agtccaggtt ctcctggcag ggaacgcgtt cactgccggg aagatcctct tcgccgctgt
5461 cccgccaaat tttccggtgg aattcttaag cccagcccag attacaatgc tcccacatat
5521 aatagtagat gttaggactc ttgaaccaat tatgatccca ttacctgatg ttaggaatac
5581 attcttccac tacaataatc agcccaatag ccgcatgaaa ttagtggcta tgctctacac
5641 cccccttaga tctaatggct caggtgatga tgttttcact gtttcttgca gggttttgac
5701 taggcctact cctgactttg agttcactta tctagtgcca ccctctgttg aatctaagac
5761 taaacccttt tctttaccca ttctaaccct ttctgagctc acaaattcga ggttcccggt
5821 ccccatcgat tcgcttttca ccgcccaaaa taatgtgttg caggtgcagt gtcaaaatgg
5881 caggtgcaca cttgacggtg tgctactagg cacaacccag ctgctcccat ctggcatctg
5941 tgcgttcagg ggacgggtga cagcagaaac tgacaatcct gacaagtggc acatgcaact
6001 gcaaaacctt aatggcacaa catatgaccc aactgatgat gtgccagccc cactgggcac
6061 acctgacttc aagggcgtcg tgtttgggat ggcaagccaa agaaatgtgg gcaacgacag
6121 gcccggctca accaggtccc atgaggcggt gatctcaacc tacagcccca gatttgttcc
6181 taaattaggc tctgtcaatt tcaaaagtga tgacgatgat ttccaattgc agccaacaag
6241 attcacacca gtgggcatta atgatgatgg caaccaacca ttcagacaat gggaactacc
6301 agattattca ggggtgctca ccttgaatat gaaccttgcc ccccctgttg ctccaaattt
6361 ccctggcgaa caattactat tcttcagatc ttatgtgcca tgttcaggag gttacaacca
6421 aggtattata gattgcctta tcccccaaga atgggtccaa catttctacc aggaatcagc
6481 accttctcag tcagacgtgg ccctagtcag gtacaccaac cccgacacgg gtcgtacact
6541 gtttgaggca aaattgcata agtcaggcta tatcactgtg gctcattctg gagactatcc
6601 ccttgttgtt ccggctaatg gatactttag atttgactct tgggtaagtc ctttttactc
6661 actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc tggagctttc
6721 attgcaggat tggcgggtga catgctcacg tcatccgtgg gctccctggt gaacgcaggg
6781 gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca gtctgcttcc
6841 tttcaacatg acaaagagat gctccgagcg caggtgaacg caaccaaaca gctgcaatct
6901 gagatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc cactgatgca
6961 gcgagggggg ccatcggtgc acccatgaca aaggtgcttg actggtctgg cactcgatac
7021 tgggctccca attccacaaa gacaactggt tattcggggc aattcacctc ttcacctgtg
7081 cacatgccca gcccgagtgt cccacaatca aaacccgcaa agcccaagcc tccaggttct
7141 tcttcttctt ctagtagtgt ttacagtatg tctacccagt taacttcttt aacatctggc
7201 tcttctagta atgcttcttc tgcttctaca aaatcaacaa atttgagctc cggctcttct
7261 caaaacagaa cagcagagtg ggtgaaccaa cagagaagtc tcagcccttt catgagtggc
7321 gcactcaata tctcgcatgt cacgccacct tcaagtaggg cctccagttc tgggacggtc
7381 tcaaccgtgc ccaaggaagt tttggactcc tggacatctg cattcaacac acgcagacag
7441 ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa
//