Typing tool
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Typing tool
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Complete norovirus genomes
| PZ261142 | GI.7 | |
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| GI.P7 |
ORF1: 5..5401
ORF2: 5385..7001
ORF3: 7001..7648
LOCUS PZ261142 7807 bp RNA linear VRL 13-APR-2026
DEFINITION Norovirus GI isolate GII/Hu/RU/2025/GI.7[P7]/Nizhny_Novgorod447,
complete genome.
ACCESSION PZ261142
VERSION PZ261142.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7807)
AUTHORS Epifanova,N.V., Oparina,S.V., Alekseeva,A.E., Kashnikov,A.Y. and
Novikova,N.A.
TITLE Genetic diversity of noroviruses from sporadic cases and outbreaks
in Nizhny Novgorod, Russia, 2012-2026
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7807)
AUTHORS Epifanova,N.V., Oparina,S.V., Alekseeva,A.E., Kashnikov,A.Y. and
Novikova,N.A.
TITLE Direct Submission
JOURNAL Submitted (08-APR-2026) Laboratory of Molecular Epidemiology of
Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute
of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny
Novgorod 603950, Russia
COMMENT ##Assembly-Data-START##
Assembly Method :: Unipro UGENE v. v. 42.0; SPAdes v. 4.1.0;
Unicycler v. 0.5.1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7807
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="GII/Hu/RU/2025/GI.7[P7]/Nizhny_Novgorod447"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122928"
/geo_loc_name="Russia: Nizhny Novgorod"
/collection_date="27-Mar-2025"
/note="genotype: GI.7[P7]"
gene 5..5401
/gene="ORF1"
CDS 5..5401
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YDU87110.1"
/translation="MKMASNDAVSAADVSKQNANTNNEKIGSRLMAKLKERISSQRGE
GTTKIKNTEMALDLIRRSQTPSPTRSDPPPKAQRDRPPRTVSEVKQVLGWDDPASKDY
GARAWCDLTAEEKKEILDNNERLFDAGGVTPSTVPSTFERCGTLERADDCHPVKWSES
TGVDLGVDSLTTVTGPVWNMCPLPPIDSRNTGPASEPRIGDMIEFYEGHIFHYAIYLG
QGKTIGVHSPQAAFSIARITIHPMAAWWRVCYEPTDQQRLSYDQLKELENEPWPYASV
TNNCYEFCCRVMSLDDSWLQRKLVTTGRFNHPTQEWSRETPDFHQDSKLEIVRDAVLS
AINGLVSQPFKNVLSKIKPLNLLSLLSNCDWTFMGVVELVVLLAELFDIFWTPPDISN
FIASLLPDFHLQGPEDLARDLIPLVLGGIGMAIGFTRDKVTKVMKSAVDGLRSATQLG
QYGLEVFSIIKKYFFGGDQTEKTLKSIENAVIDMEVLSSTNVTQLVRDKKLAKTYMNI
LDNEEEKARKLSVRSADPHVVTTVNNLISRISMARSALAKAQAEMTSRARPVVVMMCG
PPGIGKTKAAEHLANRLAGEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKIT
EDCNKLQAIADTAPFTLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRV
DFLVYCTAPEIEQTRRAHPGDTNAIKNLFKPDFSHLKMEIAPQGGFDNQGNTPFGKGA
MKPTTLNRLLIQAVALTMERQDEFQMQGTVYNFDEDRVTAFTSLARANGLGLLSMAAL
GKKLRSVNNMEGLRNALKGYKILPCDIVWNNRTYTVKSDGSNVSVTEKHAAATLQQQA
ISSVTLALSRLRAARALAYASCFQSAVTTILQMAGSAVVISRAVKRMFGTHTNQPALE
GKPREHNCRVHRAEREGRGPIGHDGIIERYGLCETDQEEEEKIEMEVPTAGQEGKNKG
KNKKGRGRKNNYNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEV
QAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVTGTEIRKRKPIDWTPPK
NDWSEDTRQVDYDEHISFEAPPSIWSRVVKFGSGWGFWVSPTVFITTTHVIPPDAKEI
FGEKLSDIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMVKRDSGELLPL
AVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCG
VHAAATKSGNTVVCAIQSGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKS
TPQPLPPGTYEPAYLGGRDPRVDGGPSLQQVLRDQLKPFAEPRGRLPEPSLLEAAVET
VTNVLEQTMDTPVPWSYNDACMSLDKTTSSGYPYHKRKNDDWNGNAFVRELGEQAAHA
NNMYELGKSVKPVYTAALKDELVKPEKVYTKIKKRLLWGADLGTVIRAARAFGPFCEA
IKPHVIRLPIKVGMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMLESFNIMC
KLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCAL
SEVTGLAPDVLQSQSYFSFYGDDEIVSTDVEFNPIKLTQVLREYGLKPTRPDKSEGPI
IVKQQIDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRK
IQLISLLGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAMFRWMRFHDLSMWTG
DRNLLPDYVNDDGV"
mat_peptide 5..1216
/gene="ORF1"
/product="p48"
mat_peptide 1217..2305
/gene="ORF1"
/product="NTPase"
mat_peptide 2306..2905
/gene="ORF1"
/product="p22"
mat_peptide 2906..3325
/gene="ORF1"
/product="VPg"
mat_peptide 3326..3868
/gene="ORF1"
/product="Pro"
mat_peptide 3869..5398
/gene="ORF1"
/product="RdRp"
gene 5385..7001
/gene="ORF2"
CDS 5385..7001
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDU87111.1"
/translation="MMMASKDAPSNMDGTSGAGQLVPEVNTAEPLPLEPVVGAATAAA
TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLRLGPHLNPFLQHLSQMYNG
WVGNMRVRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEI
PLDDVRNVLYHTNESRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL
FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMIKQMTVSTDQNQVVRFQNGRCTLEGQ
LLGTTPVSANQVARIRGTVFTTNSGVGLNLSELDGTPYHAFESPAPLGFPDIGGCDWH
VYAFRVNQNTGDPMYRLDITQGNTFAPHLGSIEFSSEQRPSGDLLGTLTWISPLNNAS
SVDPWKIPSYGSTLNESPNLAPPIFPPGFGEVIVYFMSDFPIVSGNTTQIPCTLPQEF
ISSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV
FIFSSWVSRYYQLKPVGTAGPARRLGVRRV"
gene 7001..7648
/gene="ORF3"
CDS 7001..7648
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDU87112.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN
SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIAGAPVSKIVDWNG
VRIAAPASTATTLRSGNFMSIPVTPKKESQKLPARSVGYPNPNYDSSTMVSRTSQWVE
SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSVPRYFNTERLPLFANNRK"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgccgt ttccgctgct gatgtcagca aacaaaatgc
61 taacaccaac aacgaaaaga tcggttctcg ccttatggcg aaactgaaag agcgcataag
121 ctctcaacgt ggtgaaggaa ccacgaagat caagaacact gaaatggcat tggacctgat
181 acgtaggtcc caaacaccat cgccaacgcg ctcagacccc cctccaaagg cgcaacgcga
241 tcgcccccca aggacggtgt cagaagtcaa acaggttttg ggttgggatg accctgctag
301 taaggattat ggggctcgag catggtgcga cttaacagct gaagaaaaga aggaaatcct
361 ggacaacaac gagcgcctct ttgacgctgg cggcgtgact ccttcaacag taccaagcac
421 ttttgagagg tgtggcacac ttgagcgagc cgacgactgc caccctgtta agtggagtga
481 gtctacaggt gtggatttag gggtggattc tctgaccact gttacaggcc cggtgtggaa
541 catgtgcccc ctcccaccaa ttgattcgcg caacactggt ccagcaagtg agccacgtat
601 tggagacatg atagaatttt atgaagggca catatttcat tatgccatat atcttggtca
661 agggaagacc ataggggtcc actctcctca ggcagctttt tccatagctc gcataactat
721 acaccctatg gcagcatggt ggcgtgtctg ctatgagcca acagatcaac aacgtctcag
781 ctatgaccaa ttaaaggaac ttgagaatga gccgtggccc tatgcatccg taacgaacaa
841 ttgttacgag ttttgctgcc gtgttatgtc cttagacgac tcctggttac aacgaaaatt
901 ggtaacaact ggtagattta atcatcccac ccaggagtgg tccagggaaa cacctgattt
961 tcaccaggac tcaaaattag agatagtgag agacgcagta ctatccgcca taaacggcct
1021 ggtctctcaa ccttttaaga acgtcctctc aaaaattaaa ccactaaatt tgctttcctt
1081 gctgtcaaat tgtgattgga cttttatggg ggttgtcgag ctagtagtgc tgctggccga
1141 attatttgac atcttctgga ccccacctga tatctctaat tttatagcat ctctcctacc
1201 tgacttccac ctgcaagggc cagaggattt ggcaagagac ctaatcccat tagtattggg
1261 gggcatcggt atggccattg gtttcactag agacaaagtc acaaaggtta tgaagagtgc
1321 cgttgatggc ctgcgctcag ccacgcagct tggacaatat ggccttgagg tgttctcaat
1381 tataaagaag tatttctttg gtggagacca aactgagaaa accctcaaga gcatagagaa
1441 tgcagtcata gacatggaag tcctgtcgag caccaatgtc acacaactgg tgcgcgacaa
1501 gaaattggct aaaacataca tgaacatcct agacaatgaa gaggaaaagg caagaaaact
1561 ttcagtgcgc agtgccgacc cgcatgttgt gacaacagtc aataatctca tttcgcgcat
1621 atccatggcg cgatcggctc ttgccaaggc tcaagctgag atgaccagtc gggcacgtcc
1681 cgtggtcgta atgatgtgtg ggccaccagg tataggaaag accaaagctg ctgagcacct
1741 ggccaaccgc ctggctggtg agataaggcc aggaggaaaa gtgggcttag tgcctaggga
1801 atccattgac cattgggatg gctaccatgg ggaagaagtc ctgctgtggg atgactacgg
1861 catgtccaag ataacagagg attgtaataa actacaagcc atagctgaca ctgccccatt
1921 cacacttaac tgtgacagaa tagaaaacaa gggcatgcaa tttgtatcag atgcaataat
1981 aataacaaca aatgcccccg ggccagcccc cgtcgacttt gttaacctgg gtccagtatg
2041 tcgacgtgta gacttcctgg tgtattgcac cgcccccgaa attgaacaaa ccaggagagc
2101 ccaccctggg gacaccaatg ctatcaagaa tctgttcaaa ccagactttt cccatctaaa
2161 aatggagata gcaccacaag ggggatttga caaccaaggc aacaccccct ttggaaaggg
2221 tgctatgaag ccaaccacac tcaataggct gcttatacag gcagttgctc tgacaatgga
2281 gagacaagat gaattccaga tgcaggggac agtgtataac tttgatgagg atcgggtcac
2341 agctttcact agcctggccc gggcaaatgg attaggactt ttgagcatgg ctgcacttgg
2401 caagaagttg cggagtgtca acaatatgga aggactccgc aacgccctta aggggtacaa
2461 gatcctgcca tgtgacattg tgtggaacaa caggacttac actgttaagt cagatggatc
2521 aaatgtgagt gtcacagaaa agcatgcagc cgccactctc cagcaacaag ccatcagctc
2581 agttactctg gcactttcta ggttacgcgc cgcgcgggcg ttggcgtatg cgtcatgctt
2641 ccagagcgca gtgaccacca tcttgcaaat ggctggatct gcagtggtga tcagcagggc
2701 agtcaaacgc atgtttggaa cccatactaa tcagccagcc ttagagggca aacccagaga
2761 acacaactgc agggtccacc gagctgaaag agaaggccgt ggccctattg gccatgacgg
2821 catcatagaa cggtatggtc tatgtgagac cgaccaagaa gaagaagaga agattgagat
2881 ggaagtgcca actgcgggtc aagagggcaa gaacaagggc aagaacaaga aggggcgagg
2941 aaggaaaaat aattacaacg ccttctctag acgaggccta agcgatgagg agtatgaaga
3001 atacaagaag gtcagagaag agaagggtgg taattacagc atccaagagt acctcgagga
3061 ccgtcaacga tatgaagaag agctggctga ggtccaagca ggtggagatg gcgggatcgg
3121 tgaaacagag gcagagattc gccatcgagt tttctacaaa tccaagagtg gcatgcgaaa
3181 acaacgtcaa gaggaacgcc ggcagcttgg gttagtcaca ggtactgaaa tcagaaaacg
3241 caagcccata gattggacac cacctaagaa tgattggtca gaagacacca ggcaggtcga
3301 ctatgatgaa cacatcagct ttgaagcccc accttctatt tggagcaggg tggtcaaatt
3361 tggtagtgga tggggtttct gggtgagccc aacagtcttt atcacaacca cacacgtcat
3421 accaccagat gctaaagaaa tttttgggga aaaactttca gacatagcaa tacacagagt
3481 tggggagttc acacaattta ggttctctaa aaagatgaga cctgacctta gtggtatggt
3541 ccttgaggag ggttgcccgg aaggaacggt atgtaccatc atggtgaaga gagattcagg
3601 tgaactgctg cctctggctg tgcgcatggg agctgttgcg tccatgaaga tacaaggcaa
3661 gctcatgcat ggtcagtctg gtatgttgtt aaccggtgca aatgctaagg gaatggacct
3721 gggcaccatc cctggagact gtggagctcc atatgtgcac aaaaggggaa atgactgggt
3781 ggtgtgtgga gtgcatgcag ccgcaaccaa gtcaggcaac accgtggtgt gtgcaataca
3841 gtcaggtgaa ggtgaagcca cccttgaagg aggtgggcaa aacaaaggac actatgcagg
3901 ccacccaatc ttaaggtatg gtaatgggcc ctctctctcc acaaaaacca aattttggaa
3961 atcaacccct caaccactcc cacctgggac ctatgaacca gcttatctag gtgggcgtga
4021 ccccagagtg gacggtggtc catcactcca acaagtccta cgtgaccaac tcaagccttt
4081 tgctgagccc cgtggtaggc tgccagaacc gagcttgctc gaggcagccg tggaaactgt
4141 cacaaatgtt ttagaacaaa ccatggacac acctgtacct tggagctaca atgacgcctg
4201 tatgtctctt gacaaaacca ccagctcagg ttatccgtac cataaacgca agaatgatga
4261 ttggaatggt aatgcgtttg tgcgtgagct tggtgaacag gcagctcatg ctaacaacat
4321 gtatgagttg ggcaagtcag tcaagccagt ttacacagca gcacttaaag atgaattggt
4381 gaaaccagaa aaagtgtata caaaaattaa gaagagactg ctttggggtg cggaccttgg
4441 cactgtcatc cgggccgctc gagccttcgg cccattctgt gaggcgataa aaccacatgt
4501 gataagatta ccgatcaagg ttggcatgaa tgcaatcgaa gatggccccc tcatatacgc
4561 tgaacatgca aagtacaaat atcattttga tgcagattat acagcctggg attcaactca
4621 gaatagagag attatgctgg aatcttttaa catcatgtgt aagctcacag ccaatccatc
4681 actggccgct gttgtggcac aggacctgct gtctccatca gaaatggatg tgggggatta
4741 tgtgattagt gttaaggatg gcctcccctc aggattccca tgcacctcac aggtgaacag
4801 cataaatcat tggatttaca ccctatgtgc cctgtcagag gtcacaggcc tggcccctga
4861 tgtgctgcaa tcccagtctt acttttcttt ttatggggat gatgagatag tgtcaactga
4921 tgttgaattt aatccaataa agctcaccca agtgctcaga gagtatggtt tgaagcccac
4981 ccgacctgac aaatcagaag ggcccatcat agtgaagcaa caaatagatg ggctggtctt
5041 cctcagacgc accatttcaa aagacgctgc tggttaccag gggcgtctag atcgcaactc
5101 cattgaaagg caattgtggt ggactcgggg accaaatcat gatgacccct ttgagactct
5161 aataccccat caacaaagga agatccagtt gatatcccta cttggtgagg ctgcactcca
5221 tggggagaaa ttctacagaa agatagccaa tagggtgata caggaagtta aggagggagg
5281 gctcgagctc tacataccag gttggcaggc catgtttcgc tggatgcgat ttcacgacct
5341 gagcatgtgg acaggagatc gcaatctgct gcccgattat gtaaatgatg atggcgtcta
5401 aggacgcccc ctcaaacatg gatggcacta gtggtgccgg tcagctggtc ccagaggtta
5461 atacagctga acctctaccc cttgaaccgg tggtgggcgc tgccactgcg gcggccactg
5521 ctggacaggt taatttaata gacccctgga tcatgaataa ttttgtccaa gcccctgaag
5581 gcgaatttac tatctcaccc aataataccc ctggagatat tttgtttgat ttgcgtctgg
5641 ggccacacct caaccccttc ctccaacatt tgtctcagat gtataatggt tgggtcggga
5701 acatgagagt tagggtcatg cttgcaggga acgcgttctc tgctggtaag atcataattt
5761 gttgtgtccc acccggcttt gaatctcaga acatatcaat tgggcaagcc actatgttcc
5821 cccatgtcat agctgatgtg agggtcctgg aacccataga aatccccctt gatgatgtgc
5881 gcaatgtcct gtaccataca aatgagagtc gcccaaccat gcgactgctc tgtatgttgt
5941 acacacccct ccgtgctgga ggagcttcat caggcacaga cccttttgtc attgctggcc
6001 gtgtgttaac ttgtcctgcc cctgatttta attttctgtt tcttgtgccc cctagtgtag
6061 aacagaaaac caggcaattg actataccca atataccctt gaataatttg gctaattcca
6121 gagtgcccgc aatgataaag cagatgacgg tctctactga ccagaatcag gtggtccggt
6181 tccagaatgg ccgttgcaca cttgaaggac aactcttagg cacgactcct gtttcagcca
6241 atcaagttgc ccgcatacgc ggcacggtct tcacgaccaa ctccggggtt gggcttaatt
6301 tatctgaatt agatggaacc ccctatcatg catttgagag tccggcccct ctcggttttc
6361 ctgacatagg tggttgtgat tggcatgtgt atgcctttag ggttaatcaa aatacggggg
6421 atcccatgta cagattggac ataacacaag gaaacacatt tgcgccgcat cttggctcca
6481 ttgagttttc ttctgagcag cgcccgtcag gggacctatt aggcacactc acttggatct
6541 cccctctcaa taatgcctcc agtgtcgacc cctggaaaat cccatcttat ggttcaacac
6601 taaatgaatc ccccaacctg gcaccaccca tctttccacc aggctttggt gaggtcatag
6661 tttactttat gtcagatttt cccattgtat caggcaacac tacccaaatt ccctgcaccc
6721 taccccaaga attcatctca tcctttgtgg aacagcaggc accaatccga ggcgaagctg
6781 ccctattgca ctatgtggac ccagataccc atcgtaatct gggagaattc aaattgtacc
6841 ctgatgggtt catcacctgt gtgccaaaca cgggtggcgg cccccaaaac ctcccttcaa
6901 atggtgtctt tatcttttct tcttgggtct ctagatatta tcaattgaag cctgtgggaa
6961 cagccggtcc ggctaggcgg cttggtgtga gaagggtata atggcccaag ccattatagg
7021 agctattgcc gccaccgctg ctggtagcgc agtgggggca ggaatccaag ctggaactga
7081 ggcagccttg caataccaaa gattccaaca agaccttacc ctgcaggaaa attcttttaa
7141 acatgatgaa aggatgttgg gtttgcaaat tgaggggtct aatgctttgt tacaaaagaa
7201 tctttctact cgctataacc tcttagtcgg tgcaggtctt tcctcagctg acgctgcaag
7261 gtccatcgct ggggccccag tgtcaaaaat tgtggactgg aatggggtga gaattgctgc
7321 ccccgcatcc acggccacca ctctccgttc tggcaacttc atgagcatac cagtcacacc
7381 caaaaaggag tcccaaaaac tgccagcacg ttctgtgggt tatcccaatc ctaattatga
7441 ctcatccact atggtttcta gaacatctca atgggtggag tcacaaaatt caatcaggaa
7501 cctgtcacct tttcatagct cagctctgag gactacttgg gtaactcctc ctggttctac
7561 ttctacttca accttttcta ctgtttcttc ggtgccacgg tatttcaaca ccgagcgcct
7621 tcctctgttc gcaaacaata ggaaatagtt tttgtaatat aatgtgggca ttatattcat
7681 atttggttta ttaattggat taatttgatt aattgggcat ttcatatttg gtttattaat
7741 tgatttaatt tgattaacta gatttgaatt gaatgttaaa aaaaaaaaaa aaaaaaaaaa
7801 aaaaaaa
//