Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234817 | GII.17 | |
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| GII.P17 |
ORF1: 1..5100
ORF2: 5081..6697
ORF3: 6697..7476
LOCUS PZ234817 7547 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20241997 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234817
VERSION PZ234817.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7547)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7547)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7547
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20241997"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="06-Dec-2024"
/note="genotype: GII.17[P17]"
gene <1..5100
/gene="ORF1"
CDS <1..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YDR55929.1"
/translation="ASNDASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQ
PPPGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPD
AQNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAIS
LAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGK
LKPLNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSS
KSASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAREL
AKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEK
AKRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARA
SGLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRIGNQLKSVKTL
DELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLR
SARIRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGC
PKPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERTTLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSP
SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEG
TVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYW
SGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
STMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP
NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE
SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..990
/gene="ORF1"
/product="p48"
mat_peptide 991..2088
/gene="ORF1"
/product="NTPase"
mat_peptide 2089..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6697
/gene="ORF2"
CDS 5081..6697
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55930.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGVND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6697..7476
/gene="ORF3"
CDS 6697..7476
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55931.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gcgtctaacg acgcttccgt tgccgttgct ggcaaaaaca acaacaacga caatgtaaaa
61 tcttcaagtg acagcttgtt ttctaacatg actgttactt ttaagaaagc cctcggggcg
121 cggtctaagc agccgccccc gggagaaaca aaacaaacac taagaccacc aaggccgccg
181 acaccggaat tggtgaagaa gataccccca ccccccccca atggcgagga tgaaccaaag
241 gtaacgtata aggtgggaga aggtgtgtct gggctgcccg acttaacaac cgtggcacaa
301 cctgacgcac agaacacagc ctatagtgtc cccccactta gccagagaga ggtcggcgaa
361 gctagagaac cgttgcctgg ctccattctg gaaatgtggg atggtgagat ctaccactat
421 gggctgtatg ttgagcgggg gcatgtgctg ggagtgcaca aaccacctgc tgcaataagc
481 cttgccaaaa ttgagttaac accgctgtct ctctactgga gagtggtcta cactccccag
541 tacttgatag ctccagagac cctcaagaat ttaaatggag agactttccc atacacggcc
601 tttgacaaca actgttatgc cttctgttgt tgggttctag acctcaacga ctcctggctt
661 agcagaagaa tggtccaaag aacaaccgga ttctttagac cgtatcagga ctggaacaga
721 aaacccttac caaccatgga tgaaccaaaa atcaagaagg ccgcgaatgc tgttctgtgt
781 gctctctctt cactcttcac taggcccatc aaagatgtca ttggaaagct taaaccacta
841 aacattatga acatactggc aacttgtgat tggacttttg cgggcatagt ggaatccatg
901 atccttcttg ctgaactctt tggggtgttc tggacgcccc cagatgtgtc tgcaataatt
961 gctcccttac tcggtgacta cgagatgcaa ggccccgaag acctggccgt ggaacttgtg
1021 cccgtggtaa tgggaggaat aggtttggtg ttaggattca ccaaggaaaa gatcggcaag
1081 atgctttcat cagctgcaac cacactcagg gcctgtaagg atctaggatc ttatgggttg
1141 gagatactca aactggtcat gaagtggttc ttccccaaga aggaggaggc caacgagtta
1201 gccatggtga gggccattga ggatgcagtt ctggatttgg aggcaataga aaacaaccac
1261 atgaccactc tccttaagga caaagacgcc ctggccacat acatgaggac tcttgacttg
1321 gaagaagaaa aagcaaggaa actatcttcc aaatcggcgt cacctgacat cgtgggcaca
1381 gtaaacgcat tattggcaag aatagcagcc gccaggtcac tggtccacaa ggctaaggag
1441 gagctctcga gcagacagag acctgttgtt gttatgatat caggtaggcc aggtatagga
1501 aagacccatc tggccagaga gctagccaag aaggttgcgt caacactgtc aggcgaccaa
1561 aggattggac tgatacccag aaatggcgtc gaccattggg acgcctacaa aggagagcgg
1621 gtggttctgt gggatgacta tggcatgagc aaccctatac aggacgcact gaggctccaa
1681 gaattggctg acacctgtcc tctgacccta aattgtgaca gaattgaaaa taaaggaaaa
1741 gtgttcgaca gtgacgccat aatcataacg accaaccttg caaacccagc accattggat
1801 tatgtcaact ttgaggcttg ttccagacgc atagacttct tggtgtatgc agacgcacct
1861 gacatcgaga aggctaagcg tgactttcct ggccaaccag atatgtggaa agaccattac
1921 agaccagact tctcacatat taaacttcag ctcgcaccac agggaggctt tgataagagt
1981 ggcaacaccc cacatggcaa aggcgtggtt aagtctctga cgattggctc tctgatcgcc
2041 agggcttctg gcttgctcca tgagagaatg gatgaattcg agctccaagg ccccaactta
2101 ccaaccttca atttcgaccg taacaaagtc gccgccttca gacaattggc agctgaaaac
2161 aaatacggtc ttatggacac actgagaatc ggcaaccaac tgaaaagtgt caaaaccctg
2221 gatgagctga agcaggccat aaagaacatc accatcaaga agtgccagat agtgtacaat
2281 ggatgcacct acaccatgga atctgatggg aggaacaagg ttgtggttga aaaggttcaa
2341 aatgcaacag tccaaaccaa caatgaactt gcaggagcac tccaccacct gagatctgca
2401 agaataaggt attatgtcaa atgtttccaa gaagctattt actctatact ccaaattgct
2461 ggtgcagcct tcgtcaccac acgcatcgtg aggcgcatga acatctcaaa cctctggtcg
2521 aagccacccg tcgaagaggg tgatgagcct gaagacaaag gggggtgccc caagcccagg
2581 gatgaagatg acctcactat tgactccaaa gacattaaag cagaaggtaa gaagggcaag
2641 aacaaatctg gccggggcaa gaaacacaca gctttctcat ccaagggcct cagtgatgaa
2701 gagtacgatg agtacaagag aatcagggag gagagaaatg gcaagtactc aatagaagaa
2761 tacctccagg atagggatag atactatgaa gagcttgcca ttgctaaggc cactgaggaa
2821 gacttctgtg aagaggagga aatcaaaatt cgccagagaa tcttccggcc cactaggaag
2881 cagcggaaag aggaaagaac cacgcttggg ctcgtcacag gatcggaaat cagaaagagg
2941 aacccagatg attttaagcc aaaaggaaaa ttgtgggctg atgacaacag gagtgtggac
3001 tacaatgaga ggatagattt tgaggctccc ccaagtgttt ggtctaggat agtcaacttt
3061 ggtacaggat ggggattctg ggtctcccca agtctcttta taacttcaac acatgtcata
3121 ccaaaaggaa ttactgaggc ctttggggtt cccattaacc aaattcaaat tcacaaatct
3181 ggagagtttt gccgcttgcg gtttccaaaa ccaatcaggc cagacgtgag tggaatgatc
3241 ttggaagagg gtgcccctga aggcactgtt gtttccattc tcatcaagag gacgacaggg
3301 gaactgatgc ctctcgcagt cagaatggga actcatgcca caatgaaaat ccaaggtaga
3361 acggtgggcg gtcaaatggg catgcttctc actggctcaa acgccaaaag catggaccta
3421 ggcacaacac caggtgactg tgggtgccca tacatataca aaaggggcaa tgacttcgtg
3481 gtcattgggg tgcacactgc agcagcccgt ggaggtaaca cggtcatatg tgccacacag
3541 gggagtgaag gcgaagccac cctcgaagga ggtgacaaca agggcaccta ttgtggagcc
3601 cccatcttgg gtcctggcaa cgcaccaaaa ttgagcacaa aaacaaaatt ctggagatct
3661 tctaacgcgc cgctcccgcc aggcacctac gaaccagcat accttggtgg aaaagacccg
3721 cgtgtgaagg gaggcccatc tctacaacag gttatgagag accaactcaa accttttaca
3781 gagcccagag ggaagccacc aaaaccaagt gtcctagaat cagcaaagaa gaccatcatt
3841 aatgttctgg aacaaaccat tgacccccct gaaaagtggt catatgccca agcttgtgca
3901 tccctcgaca agacaacctc cagtggatac ccgcatcacg tccggaagaa tgactactgg
3961 agtggtgaat ccttcacggg gaaacttgca gaccaggcct caaaagcaaa tctcatgtat
4021 gaggaaggta agcacatgca accagtttac accgcagcac tcaaagacga gctcgtgaaa
4081 actgacaaaa tttatggcaa gatcaagaaa agactcctgt ggggctctga cctatccacc
4141 atgattcgat gcgccagggc atttggtggc ctcatggacg agctcaaagc aaattgtatc
4201 acactcccta tcagagttgg tatgaacatg aatgaagatg gtcccataat atttgaaaag
4261 cactccaggt acaggtacca ctatgatgct gattattccc gctgggattc cacacaacag
4321 cgggcagtgc tggaagcggc acttgaaatc atggtgagat tttctgctga gccacagttg
4381 gcacaaatag tggcagagga cctgctatca ccaagtgtgg ttgatgtggg cgatttcaaa
4441 attactatta atgaaggcct accatctggc gtgccttgca cttcacaatg gaattctatt
4501 gcccactggt tactcaccct atgtgccctg tctgaagtga caggactagg ccctgacatc
4561 atacaagcca actccatgta ctctttctat ggtgatgatg agattgtgag cacagacata
4621 aaattagacc cagagaaatt gactgcaaaa ctcaaagaat atggtcttaa acccacccgg
4681 cctgacaaga ctgaggggcc actggtaatt agtgaggacc tgaatgggtt gactttcctc
4741 cgccgaacag tcacccgcga tccagcgggt tggtttggaa agttggacca aaactccatc
4801 ctcagacagc tgtactggac aaggggaccc aaccatgaag accccagtga gactatgata
4861 ccacacgcac agagacctgt gcagctcatg gcattgctag gagaatcctc cctacatgga
4921 ccctcatttt acagcaaggt tagcaaactg gttatatctg aacttaaaga gggaggaatg
4981 gatttttatg tgcccagaca agagtcaatg ttcaggtgga tgaggttctc agatctaagc
5041 acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga
5101 cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaata acgagaccct
5161 tcccctagaa ccagttgcgg gcgcagccat agccgcaccc gtcactggcc aaaataatat
5221 aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt tcacagtgtc
5281 acccagaaac tctcctggag aaattttact aaacctagag ttgggccctg atctgaaccc
5341 ttatttggct catttgtcaa ggatgtataa tggatatgct ggtggagttg aagtccaggt
5401 tctcctggca gggaacgcgt tcactgccgg gaagatcctc ttcgccgctg tcccgccaaa
5461 ttttccggtg gaattcttaa gcccagccca gattacaatg ctcccacata taatagtaga
5521 tgttaggact cttgaaccaa ttatgatccc attacctgat gttaggaata cattcttcca
5581 ctataataat cagcccaaca gccgcatgag attagtggct atgctctaca ccccccttag
5641 atctaatggc tcaggtgatg atgttttcac tgtttcttgc agggttttga ctaggcctac
5701 ccctgatttt gagttcactt atctagtgcc accctctgtt gaatctaaga ctaaaccctt
5761 ttctttaccc attctaaccc tttctgagct cacaaattcg aggttcccgg tccccatcga
5821 ttcgcttttc accgcccaaa ataatgtttt gcaggtgcag tgtcaaaatg gcaggtgcac
5881 acttgacggt gagctacaag gcacaaccca gttgctccca tctggcatct gtgcgttcag
5941 ggggcgggtg acagcagaaa ctgacaatcc tgacaagtgg cacatgcaac tgcaaaacct
6001 taatggcaca acatatgacc caactgatga tgtgccagcc ccactgggta cacctgactt
6061 caagggcgtc gtgtttggga tggcaagcca aagaaatgtg ggtaacgacg cgcccggctc
6121 aaccaggtcc cacgaggcgg tgatttcaac ctacagcccc agatttgttc ctaaattagg
6181 ctctgtcaat ttcaaaagca atgatgatga tttccaattg cagccaacaa gattcacacc
6241 agtgggcgtt aatgatgatg gcaaccaacc attcagacaa tgggaattac cagattattc
6301 aggagtgctt accttgaata tgaaccttgc cccccctgtt gctccaaatt tccctggcga
6361 acaattacta ttcttcagat cttctgtgcc atgttcagga ggttacaacc aaggtattat
6421 agattgcctt atcccccaag aatggatcca acacttctac caggaatcag caccttctca
6481 gtcagaagtg gccctaatca ggtacgtcaa ccccgacacg ggtcgtacac tgtttgaggc
6541 aaaattgcat aggtcaggct atatcactgt ggctcattct ggagactatc ctcttgttgt
6601 tccggctaat ggatacttta gatttgactc ttgggtaaat cagttttact cactcgcccc
6661 aatgggaact gggaatgggc gaaggagggc tcagtgatgg ctggagcttt cattgcagga
6721 ttggcgggtg acatgctcac gtcatccgtg ggctccctgg tgaacgcagg ggcaaacgcc
6781 atcaaccaaa agatagactt tgaaaacaac aaacaactcc agtctgcttc ctttcaacat
6841 gataaagaga tgctccaagc gcaggtgaac gcaaccaagc agctgcaatc tgagatgata
6901 gccctaaaac agggggtttt ggccgcaggc ggcttttccc ccactgatgc agcgaggggg
6961 gccattggtg cacccatgac aaaggtgctt gactggtctg gcactcgata ctgggctccc
7021 aattccacaa agacaactgg ttattcgggg caattcacct cttcacctgt gcacatgccc
7081 agcccgagtg tcccacaatc aaaacccgca aagcccaagt ctctaggttc ttcttcttct
7141 tctagtagtg tttacagtat gtctacccaa ttaacttctc taacatctgg ctcttctagt
7201 aatgcttctt ctgcttctac aaaattgaca aatttgagct ccggctcttc tcaaaacaga
7261 acagcagagt gggtgaacca acagagaagt ctcagccctt tcatgagtgg cgcactcaat
7321 atctcgcatg tcacgccacc ttcaagtagg gcctccagtt ctgggacggt ctcaaccgtg
7381 cccaaggaag ttttggactc ctggacatct gcattcaaca cacacagaca gccgctcttc
7441 gcacacctca gagtgagggg ggagtcacgt gtttagtgaa aagaaataat tggctataat
7501 atgatttctt caaaatctaa atttggctaa tttgtatctt ttaaaaa
//