Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234814 | GII.17 | |
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| GII.P17 |
ORF1: 1..5085
ORF2: 5066..6682
ORF3: 6682..7461
LOCUS PZ234814 7489 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20241964 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234814
VERSION PZ234814.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7489)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7489)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7489
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20241964"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="02-Dec-2024"
/note="genotype: GII.17[P17]"
gene <1..5085
/gene="ORF1"
CDS <1..5085
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YDR55920.1"
/translation="SVAVAGKNSNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPGE
TKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTA
YSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIE
LTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRR
MVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLN
IMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVEL
VPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEA
NELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASP
DIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVA
STLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLN
CDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDF
PGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLLH
ERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQ
AIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIR
YYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPRD
EDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEI
RKRNPDDFKPKGKLWADDDRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFIT
STHVIPKGITEAFGVPISQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSI
LIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPY
IYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAP
KLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
KPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESF
TGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIR
CARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQR
AVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLK
PTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDP
SETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..975
/gene="ORF1"
/product="p48"
mat_peptide 976..2073
/gene="ORF1"
/product="NTPase"
mat_peptide 2074..2610
/gene="ORF1"
/product="p22"
mat_peptide 2611..3009
/gene="ORF1"
/product="VPg"
mat_peptide 3010..3552
/gene="ORF1"
/product="Pro"
mat_peptide 3553..5082
/gene="ORF1"
/product="RdRp"
gene 5066..6682
/gene="ORF2"
CDS 5066..6682
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55921.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6682..7461
/gene="ORF3"
CDS 6682..7461
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55922.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKDVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tccgttgccg ttgctggcaa aaacagcaac aacgacaatg taaaatcttc aagtgacagc
61 ttgttttcta acatgactgt tacttttaag aaagccctcg gggcgcggtc taagcagccg
121 cccccgggag aaacaaaaca aacactaaga ccaccaaggc cgccgacacc ggaattggtg
181 aagaagatac ccccaccccc ccccaatggc gaggatgaac caaaggtaac gtataaagtg
241 ggagaaggtg tgtctgggct gcccgactta acaaccgtgg cacaacctga tgcacagaac
301 acagcctata gtgtcccccc acttagccag agagaggtcg gcgaagctag agaaccgttg
361 cctggctcca ttctggaaat gtgggatggt gagatctacc actatgggct gtatgttgag
421 cgggggcatg tgctgggagt gcacaaacca cctgctgcaa taagccttgc caaaattgag
481 ttaacaccgc tgtctctcta ctggagagtg gtctacactc cccagtactt gatagctcca
541 gagaccctca agaatttaaa tggagagact ttcccataca cggcctttga caacaactgt
601 tatgccttct gttgttgggt tctagacctc aacgactcct ggcttagcag aagaatggtc
661 caaagaacaa ccggattctt cagaccgtat caggactgga acagaaaacc cttaccaacc
721 atggatgaac caaaaatcaa gaaggccgcg aatgctgttc tgtgtgctct ctcctcactc
781 ttcactaggc ccatcaaaga tgtcattgga aagcttaaac cactaaacat tatgaacata
841 ctggcaactt gtgattggac ttttgcgggc atagtggaat ccatgatcct tcttgctgaa
901 ctctttgggg tgttctggac gcccccagat gtgtctgcaa taattgctcc cttactcggt
961 gactacgaga tgcaaggccc cgaagacctg gccgtggaac ttgtgcccgt ggtaatggga
1021 ggaataggtt tggtgttagg attcaccaag gaaaagatcg gcaagatgct ttcatcagct
1081 gcaaccacac tcagggcctg taaggatcta ggatcttatg ggttggagat actcaaactg
1141 gtcatgaagt ggttcttccc caagaaggag gaggccaacg agttagccat ggtgagggcc
1201 attgaggatg cagttctgga tttggaggca atagaaaaca accacatgac cactctcctt
1261 aaggacaaag acgccctggc cacatacatg aggactcttg acttggaaga agaaaaagca
1321 aggaaactat cttccaaatc ggcgtcacct gacatcgtgg gcacagtaaa cgcattattg
1381 gcaagaatag cagccgccag gtcactggtc cacaaggcta aggaggagct ctcgagcaga
1441 cagagacctg ttgttgtaat gatatcaggc aggccaggta taggaaagac ccatctggcc
1501 agagagctag ccaagaaggt tgcgtcaaca ctgtcaggcg accaaaggat tggactgata
1561 cccagaaatg gcgtcgacca ttgggacgcc tacaaaggag agcgggtggt tctgtgggat
1621 gactatggca tgagcaaccc tatacaggac gcactgaggc tccaagaatt ggctgacacc
1681 tgccctctga ccctaaattg tgacagaatt gaaaacaaag gaaaagtgtt cgacagtgac
1741 gccataatca taacgaccaa ccttgcaaac ccagcaccat tggattatgt caactttgag
1801 gcttgttcca gacgcataga cttcttggtg tatgcagacg cacctgacat cgagaaggct
1861 aagcgtgact ttcctggcca accagatatg tggaaagacc attacagacc agacttctca
1921 cacattaaac ttcagctcgc accacaggga ggctttgata agagtggcaa caccccacat
1981 ggcaaaggcg tggttaagtc tctgacgatt ggctctctga tcgccagggc ttctggcttg
2041 ctccatgaga gaatggatga attcgagctc caaggcccca acttaccaac cttcaatttc
2101 gaccgtaaca aagtcgccgc cttcagacaa ttggcagctg aaaacaaata cggtcttatg
2161 gacacactga gggtcggcaa ccaactgaaa agtgtcaaaa ccctggatga gctgaagcag
2221 gccataaaga acattaccat caagaagtgc cagatagtgt acaatggatg cacctacacc
2281 atggaatctg atgggaggaa caaggttgtg gttgaaaagg ttcaaaatgc aacagtccaa
2341 accaacaatg aacttgcagg agcactccac cacctgagat ctgcaagaat aaggtattat
2401 gtcaaatgtt tccaagaagc tatttactct atactccaaa ttgctggtgc agccttcgtc
2461 accacacgca tcgtgaggcg catgaacatc tcaaacctct ggtcgaagcc acccgtcgaa
2521 gagggtgatg agcctgaaga caaagggggg tgccccaagc ccagggatga agatgacctc
2581 actattgact ccaaagacat taaagcagaa ggtaagaagg gcaagaacaa atctggccgg
2641 ggcaagaaac acacagcttt ctcatccaag ggcctcagtg atgaagagta cgatgagtac
2701 aagagaatca gggaggagag aaatggcaag tactcaatag aagaatacct ccaggatagg
2761 gatagatact atgaagagct tgccattgct aaggccactg aggaagactt ctgtgaagag
2821 gaggaaatca aaattcgcca gagaatcttc cggcccacca ggaagcagcg gaaagaggaa
2881 agagccacgc ttgggctcgt cacaggatcg gaaatcagaa agaggaaccc agatgatttt
2941 aagccaaaag gaaaattgtg ggctgatgac gacaggagtg tggactacaa tgagaggata
3001 gattttgagg ctcccccaag tgtttggtct aggatagtca actttggaac aggatgggga
3061 ttctgggtct ccccaagtct ctttataact tcaacacatg tcataccaaa aggaatcact
3121 gaggcctttg gagttcccat tagccaaatt caaattcaca aatctggaga gttttgccgc
3181 ttgcggtttc caaaaccaat caggccagac gtgagtggaa tgatcttgga agagggtgcc
3241 cctgaaggca ctgttgtttc cattctcatc aagaggacga caggggaact gatgcctctc
3301 gcagtcagaa tgggaactca tgccacaatg aaaatccaag gtagaacggt gggcggtcaa
3361 atgggcatgc ttctcactgg ctcaaacgcc aaaagcatgg acctaggcac aacaccaggt
3421 gactgtgggt gcccatacat atacaaaagg ggcaatgact tcgtggtcat tggggtgcac
3481 actgcagcag cccgtggagg taacacggtc atatgtgcca cacaggggag tgaaggcgaa
3541 gccaccctcg aaggaggtga caacaagggc acctattgtg gagcccccat cttgggtcct
3601 ggcaacgcac caaaattgag cacaaaaaca aaattctgga gatcttctaa cgcgccgctc
3661 ccgccaggca cctacgaacc agcatacctt ggtggaaaag acccgcgtgt gaagggaggc
3721 ccatctctac aacaggttat gagagaccaa ctcaaacctt ttacagagcc cagagggaag
3781 ccaccaaaac caagtgtcct agaatcagca aagaagacca tcattaatgt tctggaacaa
3841 accattgacc cccctgaaaa gtggtcatat gcccaagctt gtgcatccct cgacaagaca
3901 acctccagtg gatacccgca tcacgtccgg aagaatgact actggagtgg tgaatccttc
3961 acggggaaac ttgcagacca ggcctcaaaa gcaaatctca tgtatgagga aggtaagcac
4021 atgcaaccag tttacaccgc agcactcaaa gacgagctcg tgaaaactga caaaatttat
4081 ggcaagatca agaaaagact cctgtggggc tctgacctat ccaccatgat tcgatgcgcc
4141 agggcatttg gtggcctcat ggacgagctc aaagcaaatt gtatcacact ccctatcaga
4201 gttggtatga acatgaatga agatggtccc ataatatttg aaaagcactc caggtacagg
4261 taccactatg atgctgatta ttcccgctgg gattccacac aacagcgggc agtgctggaa
4321 gcggcacttg aaatcatggt gagattttct gctgagccac agttggcaca aatagtggca
4381 gaggacctgc tatcaccaag tgtggttgat gtgggcgatt tcaaaattac tattaatgaa
4441 ggcctaccat ctggcgtgcc ttgcacttca caatggaatt ctattgccca ctggttactc
4501 accctatgtg ccctgtctga agtgacagga ctaggccctg acatcataca agccaactcc
4561 atgtactctt tctatggtga tgatgagatt gtgagcacag acataaaatt agacccagag
4621 aaattgactg caaaactcaa agaatatggt cttaaaccca cccggcctga caagactgag
4681 gggccactgg taattagtga ggacctgaat gggttgactt tcctccgccg aacagtcacc
4741 cgcgatccag cgggttggtt tggaaagttg gaccaaaact ccatcctcag acagctgtac
4801 tggacaaggg gacccaacca tgaagacccc agtgagacta tgataccaca cgcacagaga
4861 cctgtgcagc tcatggcatt gctaggagaa tcctccctac atggaccctc attttacagc
4921 aaggttagca aactggttat atctgaactt aaagagggag gaatggattt ttatgtgccc
4981 agacaagagt caatgttcag gtggatgagg ttctcagatc taagcacatg ggagggcgat
5041 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa
5101 tgatggtgct gctggtctcg taccagaggg caataacgag acccttcccc tagaaccagt
5161 tgcgggcgca gccatagccg cacccgtcac tggccaaaat aatataattg acccctggat
5221 tagaacaaat tttgtgcaag caccaaatgg agagttcaca gtgtcaccca gaaactctcc
5281 tggagaaatt ttactaaacc tagagttggg ccctgatctg aacccttatt tggctcattt
5341 gtcaaggatg tataatggat atgctggtgg agttgaagtc caggttctcc tggcagggaa
5401 cgcgttcact gccgggaaga tcctcttcgc cgctgtcccg ccaaattttc cggtggaatt
5461 cttaagccca gcccagatta caatgctccc acatataata gtagatgtta ggactcttga
5521 accaattatg atcccattac ctgatgttag gaatacattc ttccactata ataatcagcc
5581 caacagccgc atgagattag tggctatgct ctacaccccc cttagatcta atggttcagg
5641 tgatgatgtt tttactgttt cttgcagggt tttgactagg cctactcctg attttgagtt
5701 cacttatctg gtgccaccct ctgttgaatc taagactaaa cccttttctt tacccattct
5761 aaccctttct gagctcacaa attcgaggtt cccggtcccc atcgattcgc ttttcaccgc
5821 ccaaaataat gtgttgcagg tgcagtgtca aaatggcagg tgcacacttg acggtgagct
5881 acaaggcaca acccagttgc tcccatctgg catctgtgcg ttcaggggac gggtgacagc
5941 agaaactgac aatcctgaca agtggcacat gcaactgcaa aaccttaatg gcacaacata
6001 tgacccaact gatgatgtgc cagccccact gggtacacct gacttcaagg gcgtcgtgtt
6061 tgggatggca agccaaagaa atgtgggtaa cgacgcgccc ggctcaacca ggtcccatga
6121 ggcggtgatt tcaacctaca gccccagatt tgttcctaaa ttaggctctg tcaatttcaa
6181 aagcaatgac gatgatttcc aattgcagcc aacaagattc acaccagtgg gcattaatga
6241 tgatggcaac caaccattca gacaatggga actaccagat tattcaggag tgcttacctt
6301 gaatatgaac cttgcccccc ctgttgctcc aaatttccct ggcgaacaat tactattctt
6361 cagatcttct gtgccatgtt caggaggtta caaccaaggt attatagatt gccttatccc
6421 ccaagaatgg atccaacact tctaccagga atcagcacct tctcagtcag aagtggccct
6481 aatcaggtac gtcaaccccg acacgggtcg tacactgttt gaggcaaaat tgcataggtc
6541 aggctatatc actgtggctc attctggaga ctatcctctt gttgttccgg ctaatggata
6601 ctttagattt gactcttggg taaatcagtt ttactcactc gccccaatgg gaactgggaa
6661 tgggcgaagg agggctcagt gatggctgga gctttcattg caggattggc gggtgacatg
6721 ctcacgtcat ccgtgggctc cctggtgaac gcaggggcaa acgccatcaa ccaaaagata
6781 gactttgaaa acaacaaaca actccagtct gcttcctttc aacatgataa agagatgctc
6841 caagcgcagg tgaacgcaac caagcagctg cagtctgaga tgatagccct aaaacagggg
6901 gttttggccg caggcggctt ttcccccact gatgcagcga ggggggccat cggtgcaccc
6961 atgacaaagg tgcttgactg gtctggcact cgatactggg ctcccaattc cacaaagaca
7021 actggttatt cggggcaatt cacctcttca cctgtgcaca tgcccagccc gagtgtccca
7081 caatcaaaac ccgcaaagcc caagtctcta ggttcttctt cttcttctag tagtgtttac
7141 agtatgtcta cccaattaac ttctctaaca tctggctctt ctagtaatgc ttcttctgct
7201 tctacaaaat tgacaaattt gagctccggc tcttctcaaa acagaacagc agagtgggtg
7261 aaccaacaga gaagtctcag ccctttcatg agtggcgcac tcaatatctc acatgtcacg
7321 ccaccttcaa gtagggcctc cagttctggg acggtctcaa ccgtgcccaa ggatgttttg
7381 gactcctgga catctgcatt caacacacac agacagccgc tcttcgcaca cctcagagtg
7441 aggggggagt cacgtgttta gtgaaaagaa ataattggct ataatacga
//