Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| PZ234805 | GII.17 | |
|
|---|---|---|---|
| GII.P17 |
ORF1: 1..5077
ORF2: 5058..6674
ORF3: 6674..7453
LOCUS PZ234805 7524 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20241784 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234805
VERSION PZ234805.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7524)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7524)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7524
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20241784"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="13-Nov-2024"
/note="genotype: GII.17[P17]"
gene <1..5077
/gene="ORF1"
CDS <1..5077
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="YDR55893.1"
/translation="VAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPGETKQ
TLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTAYSV
PPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIELTP
LSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQ
RTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLNIMN
ILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVELVPV
VMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANEL
AMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASPDIV
GTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTL
SGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQ
PDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLLHERM
DEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRIGNQLKSVKTLDELKQAIK
NITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIRYYV
KCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPRDEDD
LTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKR
NPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTH
VIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIK
RTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK
RGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLS
TKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPS
VLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGK
LADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCAR
AFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVL
EAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTR
PDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSET
MIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..967
/gene="ORF1"
/product="p48"
mat_peptide 968..2065
/gene="ORF1"
/product="NTPase"
mat_peptide 2066..2602
/gene="ORF1"
/product="p22"
mat_peptide 2603..3001
/gene="ORF1"
/product="VPg"
mat_peptide 3002..3544
/gene="ORF1"
/product="Pro"
mat_peptide 3545..5074
/gene="ORF1"
/product="RdRp"
gene 5058..6674
/gene="ORF2"
CDS 5058..6674
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55894.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGVND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6674..7453
/gene="ORF3"
CDS 6674..7453
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55895.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgttgctggc aaaaacaaca acaacgacaa tgtaaaatct tcaagtgaca gcttgttttc
61 taacatgact gttactttta agaaagccct cggggcgcgg tctaagcagc cgcccccggg
121 agaaacaaaa caaacactaa gaccaccaag gccgccgaca ccggaattgg tgaagaagat
181 acccccaccc ccccccaatg gcgaggatga accaaaggta acgtataagg tgggagaagg
241 tgtgtctggg ctgcccgact taacaaccgt ggcacaacct gacgcacaga acacagccta
301 tagtgtcccc ccacttagcc agagagaggt cggcgaagct agagaaccgt tgcctggctc
361 cattctggaa atgtgggatg gtgagatcta ccactatggg ctgtatgttg agcgggggca
421 tgtgctggga gtgcacaaac cacctgctgc aataagcctt gccaaaattg agttaacacc
481 gctgtctctc tactggagag tggtctacac tccccagtac ttgatagctc cagagaccct
541 caagaattta aatggagaga ctttcccata cacggccttt gacaacaact gttatgcctt
601 ctgttgttgg gttctagacc tcaacgactc ctggcttagc agaagaatgg tccaaagaac
661 aaccggattc tttagaccgt atcaggactg gaacagaaaa cccttaccaa ccatggatga
721 accaaaaatc aagaaggccg cgaatgctgt tctgtgtgct ctctcttcac tcttcactag
781 gcccatcaaa gatgtcattg gaaagcttaa accactaaac attatgaaca tactggcaac
841 ttgtgattgg acttttgcgg gcatagtgga atccatgatc cttcttgctg aactctttgg
901 ggtgttctgg acgcccccag atgtgtctgc aataattgct cccttactcg gtgactacga
961 gatgcaaggc cccgaagacc tggccgtgga acttgtgccc gtggtaatgg gaggaatagg
1021 tttggtgtta ggattcacca aggaaaagat cggcaagatg ctttcatcag ctgcaaccac
1081 actcagggcc tgtaaggatc taggatctta tgggttggag atactcaaac tggtcatgaa
1141 gtggttcttc cccaagaagg aggaggccaa cgagttagcc atggtgaggg ccattgagga
1201 tgcagttctg gatttggagg caatagaaaa caaccacatg accactctcc ttaaggacaa
1261 agacgccctg gccacataca tgaggactct tgacttggaa gaagaaaaag caaggaaact
1321 atcttccaaa tcggcgtcac ctgacatcgt gggcacagta aacgcattat tggcaagaat
1381 agcagccgcc aggtcactgg tccacaaggc taaggaggag ctctcgagca gacagagacc
1441 tgttgttgtt atgatatcag gtaggccagg tataggaaag acccatctgg ccagagagct
1501 agccaagaag gttgcgtcaa cactgtcagg cgaccaaagg attggactga tacccagaaa
1561 tggcgtcgac cattgggacg cctacaaagg agagcgggtg gttctgtggg atgactatgg
1621 catgagcaac cctatacagg acgcactgag gctccaagaa ttggctgaca cctgtcctct
1681 gaccctaaat tgtgacagaa ttgaaaataa aggaaaagtg ttcgacagtg acgccataat
1741 cataacgacc aaccttgcaa acccagcacc attggattat gtcaactttg aggcttgttc
1801 cagacgcata gacttcttgg tgtatgcaga cgcacctgac atcgagaagg ctaagcgtga
1861 ctttcctggc caaccagata tgtggaaaga ccattacaga ccagacttct cacatattaa
1921 acttcagctc gcaccacagg gaggctttga taagagtggc aacaccccac atggcaaagg
1981 cgtggttaag tctctgacga ttggctctct gatcgccagg gcttctggct tgctccatga
2041 gagaatggat gaattcgagc tccaaggccc caacttacca accttcaatt tcgaccgtaa
2101 caaagtcgcc gccttcagac aattggcagc tgaaaacaaa tacggtctta tggacacact
2161 gagaatcggc aaccaactga aaagtgtcaa aaccctggat gagctgaagc aggccataaa
2221 gaacatcacc atcaagaagt gccagatagt gtacaatgga tgcacctaca ccatggaatc
2281 tgatgggagg aacaaggttg tggttgaaaa ggttcaaaat gcaacagtcc aaaccaacaa
2341 tgaacttgca ggagcactcc accacctgag atctgcaaga ataaggtatt atgtcaaatg
2401 tttccaagaa gctatttact ctatactcca aattgctggt gcagccttcg tcaccacacg
2461 catcgtgagg cgcatgaaca tctcaaacct ctggtcgaag ccacccgtcg aagagggtga
2521 tgagcctgaa gacaaagggg ggtgccccaa gcccagggat gaagatgacc tcactattga
2581 ctccaaagac attaaagcag aaggtaagaa gggcaagaac aaatctggcc ggggcaagaa
2641 acacacagct ttctcatcca agggcctcag tgatgaagag tacgatgagt acaagagaat
2701 cagggaggag agaaatggca agtactcaat agaagaatac ctccaggata gggatagata
2761 ctatgaagag cttgccattg ctaaggccac tgaggaagac ttctgtgaag aggaggaaat
2821 caaaattcgc cagagaatct tccggcccac taggaagcag cggaaagagg aaagagccac
2881 gcttgggctc gtcacaggat cggaaatcag aaagaggaac ccagatgatt ttaagccaaa
2941 aggaaaattg tgggctgatg acaacaggag tgtggactac aatgagagga tagattttga
3001 ggctccccca agtgtttggt ctaggatagt caactttggt acaggatggg gattctgggt
3061 ctccccaagt ctctttataa cttcaacaca tgtcatacca aaaggaatta ctgaggcctt
3121 tggagttccc attaaccaaa ttcaaattca caaatctgga gagttttgcc gcttgcggtt
3181 tccaaaacca atcaggccag acgtgagtgg aatgatcttg gaagagggtg cccctgaagg
3241 cactgttgtt tccattctca tcaagaggac gacaggggaa ctgatgcctc tcgcagtcag
3301 aatgggaact catgccacaa tgaaaatcca aggtagaacg gtgggcggtc aaatgggcat
3361 gcttctcact ggctcaaacg ccaaaagcat ggacctaggc acaacaccag gtgactgtgg
3421 gtgcccatac atatacaaaa ggggcaatga cttcgtggtc attggggtgc acactgcagc
3481 agcccgtgga ggtaacacgg tcatatgtgc cacacagggg agtgaaggcg aagccaccct
3541 cgaaggaggt gacaacaagg gcacctattg tggagccccc atcttgggtc ctggcaacgc
3601 accaaaattg agcacaaaaa caaaattctg gagatcttct aacgcgccgc tcccgccagg
3661 cacctacgaa ccagcatacc ttggtggaaa agacccgcgt gtgaagggag gcccatctct
3721 acaacaggtt atgagagacc aactcaaacc ttttacagag cccagaggga agccaccaaa
3781 accaagtgtc ctagaatcag caaagaagac catcattaat gttctggaac aaaccattga
3841 cccccctgaa aagtggtcat atgcccaagc ttgtgcatcc ctcgacaaga caacctccag
3901 tggatacccg catcacgtcc ggaagaatga ctactggagt ggtgaatcct tcacggggaa
3961 acttgcagac caggcctcaa aagcaaatct catgtatgag gaaggtaagc acatgcaacc
4021 agtttacacc gcagcactca aagacgagct cgtgaaaact gacaaaattt atggcaagat
4081 caagaaaaga ctcctgtggg gctctgacct atccaccatg attcgatgcg ccagggcatt
4141 tggtggcctc atggacgagc tcaaagcaaa ttgtatcaca ctccctatca gagttggtat
4201 gaacatgaat gaagatggtc ccataatatt tgaaaagcac tccaggtaca ggtaccacta
4261 tgatgctgat tattcccgct gggattccac acaacagcgg gcagtgctgg aagcggcact
4321 tgagatcatg gtgagatttt ctgctgagcc acagttggca caaatagtgg cagaggacct
4381 gctatcacca agtgtggttg atgtgggcga tttcaaaatt actattaatg aaggcctacc
4441 atctggcgtg ccttgcactt cacaatggaa ttctattgcc cactggttac tcaccctatg
4501 tgccctgtct gaagtgacag gactaggccc tgacatcata caagccaact ccatgtactc
4561 tttctatggt gatgatgaga ttgtgagcac agacataaaa ttagacccag agaaattgac
4621 tgcaaaactc aaagaatatg gtcttaaacc cacccggcct gacaagactg aggggccact
4681 ggtaattagt gaggacctga atgggttgac tttcctccgc cgaacagtca cccgcgatcc
4741 agcgggttgg tttggaaagt tggaccaaaa ctccatcctc agacagctgt actggacaag
4801 gggacccaac catgaagacc ccagtgagac tatgatacca cacgcacaga gacctgtgca
4861 gctcatggca ttgctaggag aatcctccct acatggaccc tcattttaca gcaaggttag
4921 caaactggtt atatctgaac ttaaagaggg aggaatggat ttttatgtgc ccagacaaga
4981 gtcaatgttc aggtggatga ggttctcaga tctaagcaca tgggagggcg atcgcaatct
5041 ggctcccagt tttgtgaatg aagatggcgt cgaatgacgc cgctccatct aatgatggtg
5101 ctgctggtct cgtaccagag ggcaataacg agacccttcc cctagaacca gttgcgggcg
5161 cagccatagc cgcacccgtc actggccaaa ataatataat tgacccctgg attagaacaa
5221 attttgtgca agcaccaaat ggagagttca cagtgtcacc cagaaactct cctggagaaa
5281 ttttactaaa cctagagttg ggccctgatc tgaaccctta tttggctcat ttgtcaagga
5341 tgtataatgg atatgctggt ggagttgaag tccaggttct cctggcaggg aacgcgttca
5401 ctgccgggaa gatcctcttc gccgctgtcc cgccaaattt tccggtggaa ttcttaagcc
5461 cagcccagat tacaatgctc ccacatataa tagtagatgt taggactctt gaaccaatta
5521 tgatcccatt acctgatgtt aggaatacat tcttccacta taataatcag cccaacagcc
5581 gcatgagatt agtggctatg ctctacaccc cccttagatc taatggctca ggtgatgatg
5641 ttttcactgt ttcttgcagg gttttgacta ggcctacccc tgattttgag ttcacttatc
5701 tagtgccacc ctctgttgaa tctaagacta aacccttttc tttacccatt ctaacccttt
5761 ctgagctcac aaattcgagg ttcccggtcc ccatcgattc gcttttcacc gcccaaaata
5821 atgttttgca ggtgcagtgt caaaatggca ggtgcacact tgacggtgag ctacaaggca
5881 caacccagtt gctcccatct ggcatctgtg cgttcagggg gcgggtgaca gcagaaactg
5941 acaatcctga caagtggcac atgcaactgc aaaaccttaa tggcacaaca tatgacccaa
6001 ctgatgatgt gccagcccca ctgggtacac ctgacttcaa gggcgtcgtg tttgggatgg
6061 caagccaaag aaatgtgggt aacgacgcgc ccggctcaac caggtcccat gaggcggtga
6121 tttcaaccta cagccccaga tttgttccta aattaggctc tgtcaatttc aaaagcaatg
6181 atgatgattt ccaattgcag ccaacaagat tcacaccagt gggcgttaat gatgatggca
6241 accaaccatt cagacaatgg gaattaccag attattcagg agtgcttacc ttgaatatga
6301 accttgcccc ccctgttgct ccaaatttcc ctggcgaaca attactattc ttcagatctt
6361 ctgtgccatg ttcaggaggt tacaaccaag gtattataga ttgccttatc ccccaagaat
6421 ggatccaaca cttctaccag gaatcagcac cttctcagtc agaagtggcc ctaatcaggt
6481 acgtcaaccc cgacacgggt cgtacactgt ttgaggcaaa attgcatagg tcaggctata
6541 tcactgtggc tcattctgga gactatcctc ttgttgttcc ggctaatgga tactttagat
6601 ttgactcttg ggtaaatcag ttttactcac tcgccccaat gggaactggg aatgggcgaa
6661 ggagggctca gtgatggctg gagctttcat tgcaggattg gcgggtgaca tgctcacgtc
6721 atccgtgggc tccctggtga acgcaggggc aaacgccatc aaccaaaaga tagactttga
6781 aaacaacaaa caactccagt ctgcttcctt tcaacatgat aaagagatgc tccaagcgca
6841 ggtgaacgca accaagcagc tgcaatctga gatgatagcc ctaaaacagg gggttttggc
6901 cgcaggcggc ttttccccca ctgatgcagc gaggggggcc attggtgcac ccatgacaaa
6961 ggtgcttgac tggtctggca ctcgatactg ggctcccaat tccacaaaga caactggtta
7021 ttcggggcaa ttcacctctt cacctgtgca catgcccagc ccgagtgtcc cacaatcaaa
7081 acccgcaaag cccaagtctc taggttcttc ttcttcttct agtagtgttt acagtatgtc
7141 tacccaatta acttctctaa catctggctc ttctagtaat gcttcttctg cttctacaaa
7201 attgacaaat ttgagctccg gctcttctca aaacagaaca gcagagtggg tgaaccaaca
7261 gagaagtctc agccctttca tgagtggcgc actcaatatc tcgcatgtca cgccaccttc
7321 aagtagggcc tccagttctg ggacggtctc aaccgtgccc aaggaagttt tggactcctg
7381 gacatctgca ttcaacacac acagacagcc gctcttcgca cacctcagag tgagggggga
7441 gtcacgtgtt tagtgaaaag aaataattgg ctataatatg atttcttcaa aatctaaatt
7501 tggctaattt gtatctttta aaaa
//