Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234800 | GII.17 | |
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| GII.P17 |
ORF1: 1..5083
ORF2: 5064..6680
ORF3: 6680..7459
LOCUS PZ234800 7485 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20241712 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234800
VERSION PZ234800.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7485)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7485)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7485
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20241712"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="06-Nov-2024"
/note="genotype: GII.17[P17]"
gene <1..5083
/gene="ORF1"
CDS <1..5083
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="YDR55878.1"
/translation="VAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPGET
KQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTAY
SVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEL
TPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
VQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLNI
MNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEAN
ELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASPD
IVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVAS
TLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNC
DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFP
GQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLLHE
RMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQA
IKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIRY
YVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPAEEGDEPEDKGGCPKPRDE
DDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR
KRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITS
THVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSIL
IKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPK
LSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPK
PSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGHPHHVRKNDYWSGESFT
GKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRC
ARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRA
VLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP
TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPS
ETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..973
/gene="ORF1"
/product="p48"
mat_peptide 974..2071
/gene="ORF1"
/product="NTPase"
mat_peptide 2072..2608
/gene="ORF1"
/product="p22"
mat_peptide 2609..3007
/gene="ORF1"
/product="VPg"
mat_peptide 3008..3550
/gene="ORF1"
/product="Pro"
mat_peptide 3551..5080
/gene="ORF1"
/product="RdRp"
gene 5064..6680
/gene="ORF2"
CDS 5064..6680
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55879.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6680..7459
/gene="ORF3"
CDS 6680..7459
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55880.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSPSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 cgttgccgtt gctggcaaaa acaacaacaa cgacaatgta aaatcttcaa gtgacagctt
61 gttttctaac atgactgtta cttttaagaa agccctcggg gcgcggtcta agcagccgcc
121 cccgggagaa acaaaacaaa cactaagacc accaaggccg ccgacaccgg aattggtgaa
181 gaagataccc ccaccccccc ccaatggcga ggatgaacca aaggtaacgt ataaggtggg
241 agaaggtgtg tctgggctgc ccgacttaac aaccgtggca caacctgacg cacagaacac
301 agcctatagt gtccccccac ttagccagag agaggtcggc gaagctagag aaccgttgcc
361 tggctccatt ctggaaatgt gggatggtga gatctaccac tatgggctgt atgttgagcg
421 ggggcatgtg ctgggagtgc acaaaccacc tgctgcaata agccttgcca aaattgagtt
481 aacaccgctg tctctctact ggagagtggt ctacactccc cagtacttga tagctccaga
541 gaccctcaag aatttaaatg gagagacttt cccatacacg gcctttgaca acaactgtta
601 tgccttctgt tgttgggttc tggacctcaa cgactcctgg cttagcagaa gaatggtcca
661 aagaacaacc ggattcttca gaccgtatca ggactggaac agaaaaccct taccaaccat
721 ggatgaacca aaaatcaaga aggccgcgaa tgctgtcctg tgtgctctct cctcactctt
781 cactaggccc atcaaagatg tcattggaaa gcttaaacca ctaaacatta tgaacatact
841 ggcaacttgt gattggactt ttgcgggcat agtggaatcc atgattcttc ttgctgaact
901 ctttggggtg ttctggacgc ccccagatgt gtctgcaata attgctccct tactcggtga
961 ctacgagatg caaggccccg aagacctggc cgtggaactt gtgcccgtgg taatgggagg
1021 aataggtttg gtgttaggat tcaccaagga aaagatcggc aagatgcttt catcagctgc
1081 aaccacactc agggcctgta aggatctagg atcttatggg ttggagatac tcaaactggt
1141 catgaagtgg ttcttcccca agaaggagga ggccaacgag ttagccatgg tgagggccat
1201 tgaggatgca gttctggatt tggaggcaat agaaaacaac cacatgacca ctctccttaa
1261 ggacaaagac gccctggcca catacatgag gactcttgac ttggaagaag aaaaagcaag
1321 gaaactatct tccaaatcgg cgtcacctga catcgtgggc acagtaaacg cattactggc
1381 aagaatagca gccgccaggt cactggtcca caaggctaag gaggagctct cgagcagaca
1441 gagacctgtt gttgtaatga tatcaggtag gccaggtata ggaaagaccc atctggccag
1501 agagctagcc aagaaggttg cgtcaacact gtcaggcgac caaaggattg gactgatacc
1561 cagaaatggc gtcgaccatt gggacgccta caaaggagag cgggtggttc tgtgggatga
1621 ctatggcatg agcaacccta tacaggacgc actgaggctc caagaattgg ctgacacctg
1681 tcctctgacc ctaaattgtg acagaattga aaacaaagga aaagtgttcg acagtgacgc
1741 cataatcata acgaccaacc ttgcaaaccc agcaccattg gattatgtta actttgaggc
1801 ttgttccaga cgcatagact tcttggtgta tgcagacgca cctgacatcg agaaggctaa
1861 gcgtgacttc cctggccaac cagatatgtg gaaagaccat tacagaccag acttctcaca
1921 cattaaactt cagctcgcac cacagggagg ctttgataag agtggcaaca ccccacatgg
1981 caaaggtgtg gttaagtctc tgacgattgg ttctctgatc gccagggctt ctggcttgct
2041 ccatgagaga atggatgaat tcgagctcca aggccccaac ttgccaacct tcaatttcga
2101 ccgtaacaaa gtcgccgcct tcagacaatt ggcagctgaa aacaaatacg gtcttatgga
2161 cacactgagg gtcggcaacc aactgaaaag tgtcaaaacc ctggatgagc tgaagcaggc
2221 tataaagaac atcaccatca agaagtgcca gatagtgtac aatggatgca cctacaccat
2281 ggaatctgat gggaggaaca aggttgtggt tgaaaaggtt caaaatgcaa cagtccaaac
2341 caacaatgaa cttgcaggag cactccacca cctgagatct gcaagaataa ggtattatgt
2401 caaatgtttc caagaagcta tttactctat actccaaatt gctggtgcag ccttcgtcac
2461 cacacgcatc gtgaggcgca tgaacatctc aaacctctgg tcgaagccac ccgccgaaga
2521 gggtgatgaa cctgaagaca aaggggggtg ccccaagccc agggatgaag atgacctcac
2581 tattgactcc aaagacatta aagcagaagg taagaagggc aagaacaaat ctggccgggg
2641 caagaaacac acagctttct catccaaggg cctcagtgat gaagagtacg atgagtacaa
2701 gagaatcagg gaggagagaa atggcaagta ctcaatagaa gaatacctcc aggataggga
2761 tagatactat gaagagcttg ccattgctaa ggccactgag gaagacttct gtgaagagga
2821 ggaaatcaaa attcgccaga gaatcttccg gcccaccagg aagcagcgga aagaggaaag
2881 agccacgctt gggctcgtca caggatcgga aatcagaaag aggaacccag atgattttaa
2941 gccaaaagga aaattgtggg ctgatgacaa caggagtgtg gactacaatg agaggataga
3001 ttttgaggct cccccaagtg tttggtctag gatagtcaac tttggtacag ggtggggatt
3061 ctgggtctcc ccaagtctct ttataacttc aacacatgtc ataccaaaag gaatcactga
3121 ggcctttgga gttcccatta accaaattca aattcacaaa tctggagagt tttgccgctt
3181 gcggtttcca aaaccaatca ggccagacgt gagtggaatg atcttggaag agggtgcccc
3241 tgaaggcact gttgtttcca ttctcatcaa gaggacgaca ggggaactga tgcctctcgc
3301 agtcagaatg ggaactcatg ccacaatgaa aatccaaggt agaacggtgg gcggtcaaat
3361 gggcatgctt ctcactggct caaacgccaa aagcatggac ctaggcacaa caccaggtga
3421 ctgtgggtgc ccatacatat acaaaagggg caatgacttc gtggtcattg gggtgcacac
3481 tgcagcagcc cgtggaggta acacggtcat atgtgccaca caggggagtg aaggcgaagc
3541 caccctcgaa ggaggtgaca acaagggcac ctattgtgga gcccccatct tgggtcctgg
3601 caacgcacca aaactgagca caaaaacaaa attctggaga tcttctaacg cgccgctccc
3661 gccaggcacc tatgaaccag cataccttgg tggaaaagac ccgcgtgtga agggaggccc
3721 atctctacaa caggttatga gagaccaact caaacctttt acagagccca gagggaaacc
3781 accaaaacca agtgtcctag aatcagcaaa gaagaccatc attaatgttc tggaacaaac
3841 cattgacccc cctgaaaagt ggtcatatgc ccaagcttgt gcatcccttg acaagacaac
3901 ctccagtgga cacccgcatc acgtccggaa gaatgactac tggagtggtg aatctttcac
3961 ggggaaactt gcagaccagg cctcaaaagc aaatctcatg tatgaggaag gtaagcacat
4021 gcaaccagtt tacaccgcag cactcaaaga cgagctcgtg aaaactgaca aaatttatgg
4081 caagatcaag aaaagactcc tgtggggctc tgacctatcc accatgattc gatgcgccag
4141 ggcatttggt ggcctcatgg acgagctcaa agcaaattgt atcacactcc ctatcagagt
4201 tggtatgaac atgaatgaag atggtcccat aatatttgaa aagcactcca ggtacaggta
4261 ccactatgat gctgattatt cccgctggga ttccacacaa cagcgggcag tgctggaagc
4321 ggcacttgaa atcatggtga gattttctgc tgagccacaa ttggcacaaa tagtggcaga
4381 ggacctgcta tcaccaagtg tggttgatgt gggcgatttc aaaattacta ttaatgaagg
4441 cctaccatct ggcgtgcctt gcacttcaca atggaattct attgcccact ggttactcac
4501 cctatgtgcc ctgtctgaag tgacaggact aggccctgac atcatacaag ccaactccat
4561 gtactctttc tatggtgatg atgagatagt gagcacagac ataaaattag acccagagaa
4621 attgactgca aaactcaaag aatatggtct taaacccacc cggcctgaca agactgaggg
4681 gccactggta attagtgagg acctgaatgg gttgactttc ctccgccgaa cagtcacccg
4741 cgatccagcg ggttggtttg gaaagttgga ccaaaactcc atcctcagac agctgtactg
4801 gacaagggga cccaaccatg aagaccccag tgagactatg ataccacacg cacagagacc
4861 tgtgcagctc atggcattgc tcggagaatc ctccctacat ggaccctcat tttacagcaa
4921 ggttagcaag ctggttatat ctgaacttaa agagggagga atggattttt atgtgcccag
4981 acaagagtca atgttcaggt ggatgaggtt ctcagatcta agcacatggg agggcgatcg
5041 caatctggct cccagttttg tgaatgaaga tggcgtcgaa tgacgccgct ccatctaatg
5101 atggtgctgc tggtctcgta ccagagggca ataacgagac ccttccccta gaaccagttg
5161 cgggcgcagc catagccgca cccgtcactg gccaaaataa tataattgac ccctggatta
5221 gaacaaattt tgtgcaagca ccaaatggag agttcacagt gtcacccaga aactctcctg
5281 gagaaatttt actaaaccta gagttgggcc ctgatctgaa cccttatttg gctcatttgt
5341 caaggatgta taatggatat gctggtgggg ttgaagtcca ggttctcctg gcagggaacg
5401 cgttcactgc cgggaagatc ctcttcgccg ctgtcccgcc aaattttccg gtggaattct
5461 taagcccagc ccagattaca atgctcccac atataatagt agatgttagg actcttgaac
5521 caattatgat cccattacct gatgttagga atacattctt ccactataat aatcagccca
5581 acagtcgcat gagattagtg gctatgctct acacccccct tagatctaat ggctcaggtg
5641 atgatgtttt cactgtttct tgcagggttt tgactaggcc tactcctgat tttgagttca
5701 cttatctagt gccaccctct gttgaatcta agactaaacc cttttcttta cccattctaa
5761 ccctttctga gctcacaaat tcgaggttcc cggtccccat cgattcgctt ttcaccgccc
5821 aaaataatgt gttgcaggtg cagtgtcaaa atggcaggtg cacacttgac ggtgagctac
5881 aaggcacaac ccagttgctc ccatctggca tctgtgcgtt caggggacgg gtgacagcag
5941 aaactgacaa ccctgacaag tggcacatgc aactgcaaaa ccttaatggc acaacatatg
6001 acccaactga tgatgtgcca gccccactgg gtacacctga cttcaagggc gtcgtgtttg
6061 ggatggcaag ccaaagaaat gtgggtaacg acgcgcccgg ctcaaccagg tcccatgagg
6121 cggtgatttc aacctacagc cccagatttg ttcctaaatt aggctctgtc aatttcaaaa
6181 gcaatgacga tgatttccaa ttgcagccaa caagattcac accagtgggc attaatgatg
6241 atggcaacca accattcaga caatgggaac taccagatta ttcaggggtg cttaccttga
6301 atatgaacct tgccccccct gttgctccaa atttccccgg cgaacaatta ctattcttca
6361 gatcttctgt gccatgttca ggaggttaca accaaggtat tatagattgc cttattcccc
6421 aagaatggat ccaacatttc taccaggaat cagcaccttc tcagtcagaa gtggccctaa
6481 tcaggtacgt caaccccgac acgggtcgta cactgtttga ggcaaaattg cataggtcag
6541 gctatatcac tgtggctcat tctggagact atcctcttgt tgttccggct aatggatact
6601 ttagatttga ctcttgggta aatcagtttt actcactcgc cccaatggga actgggaatg
6661 ggcgaaggag ggctcagtaa tggctggagc tttcattgca ggattggcgg gtgacatgct
6721 cacgtcatcc gtgggctccc tggtgaacgc aggggcaaac gccatcaacc aaaagataga
6781 ctttgaaaac aacaaacaac tccagtctgc ttcctttcaa catgataaag agatgctcca
6841 agcgcaggtg aacgcaacca agcagctgca atctgagatg atagccctaa aacagggggt
6901 tttggccgca ggcggctttt cccccactga tgcagcgagg ggggccatcg gtgcacccat
6961 gacaaaggtg cttgactggt ctggcactcg atactgggct cccaattcca caaagacaac
7021 tggttattcg gggcaattca cctcttcacc tgtgcacatg cccagcccga gtgtcccaca
7081 atcaaaaccc gcaaagccca agtctctagg ttctccttct tcttctagta gtgtttacag
7141 tatgtctacc caattaactt ctctaacatc tggctcttct agtaatgctt cttctgcttc
7201 tacaaaattg acaaatttga gctccggctc ttctcaaaac agaacagcag agtgggtgaa
7261 ccaacagaga agtctcagcc ctttcatgag tggcgcactc aatatctcgc atgtcacgcc
7321 accttcaagt agggcctcca gttctgggac ggtctcaacc gtgcccaagg aagttttgga
7381 ctcctggaca tctgcattca acacacgcag acagccgctc ttcgcacacc tcagagtgag
7441 gggggagtca cgtgtttagt gaaaagaaat aattggctat aatat
//