Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234799 | GII.17 | |
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| GII.P17 |
ORF1: 1..5070
ORF2: 5051..6667
ORF3: 6667..7446
LOCUS PZ234799 7474 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20241707 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234799
VERSION PZ234799.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7474)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7474)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7474
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20241707"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="06-Nov-2024"
/note="genotype: GII.17[P17]"
gene <1..5070
/gene="ORF1"
CDS <1..5070
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YDR55875.1"
/translation="GKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPGETKQTL
RPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTAYSVPP
LSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKIELTPLS
LYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRT
TGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLNIMNIL
ATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVELVPVVM
GGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAM
VRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASPDIVGT
VNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSG
DQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIE
NKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPD
MWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLLHERMDE
FELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNI
TIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIRYYVKC
FQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPRDEDDLT
IDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQD
RDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNP
DDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVI
PRGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRT
TGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRG
NDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTK
TKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVL
ESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLA
DQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAF
GGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEA
ALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWL
LTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPD
KTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMI
PHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSD
LSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..960
/gene="ORF1"
/product="p48"
mat_peptide 961..2058
/gene="ORF1"
/product="NTPase"
mat_peptide 2059..2595
/gene="ORF1"
/product="p22"
mat_peptide 2596..2994
/gene="ORF1"
/product="VPg"
mat_peptide 2995..3537
/gene="ORF1"
/product="Pro"
mat_peptide 3538..5067
/gene="ORF1"
/product="RdRp"
gene 5051..6667
/gene="ORF2"
CDS 5051..6667
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55876.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DDNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6667..7446
/gene="ORF3"
CDS 6667..7446
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55877.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ggcaaaaaca acaacaacga caatgtaaaa tcttcaagtg acagcttgtt ttctaacatg
61 actgttactt ttaagaaagc cctcggggcg cggtccaagc agccgccccc gggagaaaca
121 aaacaaacac taagaccacc aaggccgccg acaccggaat tggtgaagaa gataccccca
181 ccccccccca atggcgagga tgaaccaaag gtaacgtata aggtgggaga aggtgtgtct
241 gggctgcccg acttaacaac cgtggcacaa cctgacgcac agaacacagc ctatagtgtc
301 cccccactta gccagagaga ggtcggcgaa gctagagaac cgttgcctgg ctccattctg
361 gaaatgtggg atggtgagat ctaccactat gggctgtatg ttgagcgggg gcttgtgctg
421 ggagtgcaca aaccacctgc tgcaataagc cttgccaaaa ttgagttaac accgctgtct
481 ctctactgga gagtggtcta cactccccag tacttgatag ctccagagac cctcaagaat
541 ttaaatggag agacttttcc atacacggcc tttgacaaca actgttatgc cttctgttgt
601 tgggttctag acctcaacga ctcctggctt agcagaagaa tggtccaaag aacaaccgga
661 ttcttcagac cgtatcagga ctggaacaga aaacccttac caaccatgga tgaaccaaaa
721 atcaagaagg ccgcgaatgc tgttctgtgt gctctctcct cactcttcac taggcccatc
781 aaggatgtca ttggaaagct taaaccacta aacattatga acatactggc aacttgtgat
841 tggacttttg cgggcatagt ggaatccatg atccttcttg ctgaactctt tggggtgttc
901 tggacgcccc cagatgtgtc tgcaataatt gctcccttac tcggtgacta cgagatgcaa
961 ggccccgaag acctggccgt ggaacttgtg cccgtggtaa tgggaggaat aggtttggtg
1021 ttaggattca ccaaggaaaa gatcggcaag atgctttcat cagctgcaac cacactcagg
1081 gcctgtaagg atctaggatc ttacgggttg gagatactca aactggtcat gaagtggttc
1141 ttccccaaga aggaggaggc caacgagtta gccatggtga gggccattga ggatgcagtt
1201 ctggatttgg aggcaataga aaacaaccac atgactactc tccttaagga caaagacgcc
1261 ctggccacat acatgaggac tcttgacttg gaagaagaaa aagcaaggaa actatcttcc
1321 aaatcggcgt cacctgacat cgtgggcaca gtaaacgcat tattggcaag aatagcagcc
1381 gccaggtcac tggtccacaa ggctaaggag gagctctcga gcagacagag acctgttgtt
1441 gtaatgatat caggtaggcc aggtatagga aagacccatc tggccagaga gctagccaag
1501 aaggttgcgt caacactgtc aggcgaccaa aggattggac tgatacccag aaatggcgtc
1561 gaccattggg acgcctacaa aggagagcgg gtggttctgt gggatgacta tggcatgagc
1621 aaccctatac aggacgcact gaggctccaa gaattggctg acacctgtcc tctgacccta
1681 aattgtgaca gaattgaaaa caaaggaaaa gtgttcgaca gtgacgccat aatcataacg
1741 accaaccttg caaacccagc accattggat tatgtcaact ttgaggcttg ttccagacgc
1801 atagacttct tggtgtatgc agacgcacct gacatcgaga aggctaagcg tgactttcct
1861 ggccaaccag atatgtggaa agaccattac agaccagact tctcacacat taaacttcag
1921 ctcgcaccac agggaggctt tgataagagt ggcaacaccc cacatggcaa aggcgtggtt
1981 aagtctctga cgattggctc tctgatcgcc agggcttctg gcttgctcca tgagagaatg
2041 gatgaattcg agctccaagg ccccaactta ccaaccttca atttcgaccg taacaaagtc
2101 gccgccttca gacaattggc agctgaaaac aaatacggtc ttatggacac actgagggtc
2161 ggcaaccaac tgaaaagtgt caaaaccctg gatgagctga agcaggccat aaagaacatc
2221 accatcaaga agtgccagat agtgtacaat ggatgcacct acaccatgga atctgatggg
2281 aggaacaagg ttgtggttga aaaggttcaa aatgcaacag tccaaaccaa caatgaactt
2341 gcaggagcac tccaccacct gagatctgca agaataaggt attatgtcaa atgtttccaa
2401 gaagctattt actctatact ccaaattgct ggtgcagcct tcgtcaccac acgcatcgtg
2461 aggcgcatga acatctcaaa cctctggtcg aagccacccg tcgaagaggg tgatgagcct
2521 gaagacaaag gggggtgccc caagcccagg gatgaagatg acctcactat tgactccaaa
2581 gacattaaag cagaaggtaa gaagggcaag aacaaatctg gccggggcaa gaaacacaca
2641 gctttctcat ccaagggcct cagtgatgaa gagtacgatg agtacaagag aatcagggag
2701 gagagaaatg gcaagtactc aatagaagaa tacctccagg atagggatag atactatgaa
2761 gagcttgcca ttgctaaggc cactgaggaa gacttctgtg aagaggagga aatcaaaatt
2821 cgccagagaa tcttccggcc caccaggaag cagcggaaag aggaaagagc cacgcttggg
2881 ctcgtcacag gatcggaaat cagaaagagg aacccagatg attttaagcc aaaaggaaaa
2941 ttgtgggctg atgacaacag gagtgtggac tacaatgaga ggatagattt tgaggctccc
3001 ccaagtgttt ggtctaggat agtcaacttt ggtacaggat ggggattctg ggtctcccca
3061 agtctcttta taacttcaac acatgtcata ccaagaggaa ttactgaggc ttttggagtt
3121 cccattaacc aaattcaaat tcacaaatct ggagagtttt gccgcttgcg gtttccaaaa
3181 ccaatcaggc cagacgtgag tggaatgatc ttggaagagg gtgcccctga aggcactgtt
3241 gtttccattc tcatcaagag gacgacaggg gaactgatgc ctctcgcagt cagaatggga
3301 actcatgcca caatgaaaat ccaaggtaga acggtgggcg gtcaaatggg catgcttctc
3361 actggctcaa acgccaaaag catggaccta ggcacaacac caggtgactg tgggtgccca
3421 tacatataca aaaggggcaa tgacttcgtg gtcattgggg tgcacactgc agcagcccgt
3481 ggaggtaaca cggtcatatg tgccacacag gggagtgaag gcgaagccac cctcgaagga
3541 ggtgacaaca agggcaccta ttgtggagcc cccatcttgg gtcctggcaa cgcaccaaaa
3601 ttgagcacaa aaacaaaatt ctggagatct tctaacgcac cgctcccgcc aggcacctac
3661 gaaccagcat accttggtgg aaaagacccg cgtgtgaagg gaggcccatc tctacaacag
3721 gttatgagag accaactcaa accttttaca gagcccagag ggaagccacc aaagccaagt
3781 gtcctagaat cagcaaagaa gaccatcatt aatgttctgg aacaaaccat tgacccccct
3841 gaaaagtggt catatgccca agcttgtgca tccctcgaca agacaacctc cagtggatac
3901 ccgcatcacg tccggaagaa tgactactgg agtggtgaat ccttcacggg gaaacttgca
3961 gaccaggcct caaaagcaaa tctcatgtat gaggaaggta agcacatgca accagtttac
4021 accgcagcac tcaaagacga gctcgtgaaa actgacaaaa tttatggcaa gatcaagaaa
4081 agactcctgt ggggctctga cctatccacc atgattcgat gcgccagggc atttggtggc
4141 ctcatggacg agctcaaagc aaattgtatc acactcccta tcagagttgg tatgaacatg
4201 aatgaagatg gtcccataat atttgaaaag cactccaggt acaggtacca ctatgatgct
4261 gattattccc gctgggattc cacacaacag cgggcagtgc tggaagcggc acttgaaatc
4321 atggtgagat tttctgctga gccacagttg gcacaaatag tggcagagga cctgctatca
4381 ccaagtgtgg ttgatgtggg cgatttcaaa attactatta atgaaggcct accatctggc
4441 gtgccttgta cttcacaatg gaattctatt gcccactggt tactcaccct atgtgccctg
4501 tctgaagtga caggactagg ccctgacatc atacaagcca actccatgta ctctttctat
4561 ggtgatgatg agattgtgag cacagacata aaattagacc cagagaaatt gactgcaaaa
4621 ctcaaagaat atggtcttaa acccacccgg cctgacaaga ctgaggggcc actggtaatt
4681 agtgaggacc tgaatgggtt gactttcctc cgccgaacag tcacccgcga tccagcgggt
4741 tggtttggaa agttggacca aaactccatt ctcagacagc tgtactggac aaggggaccc
4801 aaccatgaag accccagtga gactatgata ccacacgcac agagacctgt gcagctcatg
4861 gcattgctag gagaatcctc cctacatgga ccctcatttt acagcaaggt tagcaaactg
4921 gttatatctg aacttaaaga gggaggaatg gatttttatg tgcccagaca agagtcaatg
4981 ttcaggtgga tgaggttctc agatctaagc acatgggagg gcgatcgcaa tctggctccc
5041 agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg
5101 tctcgtacca gagggcaata acgagaccct tcccctagaa ccagttgcgg gcgcagccat
5161 agccgcaccc gtcactggcc aaaataatat aattgacccc tggattagaa caaattttgt
5221 gcaagcacca aatggagagt tcacagtgtc acccagaaac tctcctggag aaattttact
5281 aaacctagag ttgggccctg atctgaaccc ttatttggct catttgtcaa ggatgtataa
5341 tggatatgct ggtggagttg aagtccaggt tctcctggca gggaacgcgt tcactgccgg
5401 gaagatcctc ttcgccgctg tcccgccaaa ttttccggtg gaattcttaa gcccagccca
5461 gattacaatg ctcccacata taatagtaga tgttaggact cttgaaccaa ttatgatccc
5521 attacctgat gttaggaata catttttcca ctataataat cagcccaaca gccgcatgag
5581 attagtggct atgctctaca ccccccttag atctaatggc tcaggtgatg atgttttcac
5641 tgtttcttgc agggttttga ctaggcctac tcctgatttt gagttcactt atctagtgcc
5701 accctctgtt gaatctaaga ctaaaccctt ttctttaccc attctaaccc tttctgagct
5761 cacaaattcg aggttcccgg tccccatcga ttcgcttttc accgcccaaa ataatgtgtt
5821 gcaggtgcag tgtcaaaatg gcaggtgcac acttgacggt gagctacaag gcacaaccca
5881 gttgctccca tctggcatct gtgcgttcag gggacgggtg acagcagaaa ctgacaatcc
5941 tgacaagtgg cacatgcaac tgcaaaacct taatggcaca acatatgacc caactgatga
6001 tgtgccagcc ccactaggta cacctgactt caagggcgtc gtgtttggga tggcaagcca
6061 aagaaatgtg ggtaacgacg cgcccggctc aaccaggtcc catgaggcgg tgatttcaac
6121 ctacagcccc agatttgttc ctaaattagg ctctgtcaat ttcaaaagca atgacgatga
6181 tttccaattg cagccaacaa gattcacacc agtgggcatt aatgatgatg acaaccaacc
6241 attcagacaa tgggaactac cagattattc aggagtgctt accttgaata tgaaccttgc
6301 cccccctgtt gctccaaatt tccctggcga acaattacta ttctttagat cttctgtgcc
6361 atgttcagga ggttacaacc aaggtattat agattgcctt atcccccaag aatggatcca
6421 acacttctac caggaatcag caccttctca gtcagaagtg gccctaatca ggtacgtcaa
6481 ccccgacacg ggtcgtacac tgtttgaggc aaaattgcat aggtcaggct atatcactgt
6541 ggctcactct ggagactacc ctcttgttgt tccggctaat ggatacttta gatttgactc
6601 ttgggtaaat cagttttact cactcgcccc aatgggaact gggaatgggc gaaggagggc
6661 tcagtaatgg ctggagcttt cattgcagga ttggcgggtg acatgctcac gtcatccgtg
6721 ggctccctgg tgaacgcagg ggcaaacgcc atcaaccaaa agatagactt tgaaaacaac
6781 aaacaactcc agtctgcttc ctttcaacat gataaagaga tgctccaagc gcaggtgaac
6841 gcaaccaagc agctgcaatc tgagatgata gccctaaaac agggggtttt ggccgcaggc
6901 ggcttttccc ccactgatgc agcgaggggg gccatcggtg cacccatgac aaaggtgctt
6961 gactggtctg gcactcgata ctgggctccc aattccacaa agacaactgg ttattcgggg
7021 caattcacct cttcacctgt gcacatgccc agcccgagtg tcccacaatc aaaacccgca
7081 aagcccaagt ctctaggttc ttcttcttct tctagtagtg tttacagtat gtctacccaa
7141 ttaacttctc taacatctgg ctcttctagt aatgcttctt ctgcttctac aaaattgaca
7201 aatttgagct ccggctcttc tcaaaacaga acagcagagt gggtgaacca acagagaagt
7261 ctcagccctt tcatgagtgg cgcactcaat atctcgcatg tcacgccacc ttcaagtagg
7321 gcctccagtt ctgggacggt ctcaaccgtg cccaaggaag ttttggactc ctggacatct
7381 gcattcaaca cacacagaca gccgctcttc gcacacctca gagtgagggg ggagtcacgt
7441 gtttagtgaa aagaaataat tggctataat atga
//