Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234798 | GII.17 | |
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| GII.P17 |
ORF1: 1..5070
ORF2: 5051..6673
ORF3: 6673..7452
LOCUS PZ234798 7513 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20241651 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234798
VERSION PZ234798.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7513)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7513)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7513
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20241651"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="28-Oct-2024"
/note="genotype: GII.17[P17]"
gene <1..5070
/gene="ORF1"
CDS <1..5070
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YDR55872.1"
/translation="GKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQIQ
KPPRPPTPELVKRIPPPPPNGGDEPGIVYKVGEGVSGLPDLTTVAQPDAQNTAYSVPP
LSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITPLS
LYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRT
TGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNIL
ATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVM
GGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAM
VRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEERARKLSTKSASPDIVGT
INALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSG
DQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIE
NKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPD
MWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERMDE
FELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNI
SIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRYYVKC
FQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDDLT
IDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQD
RDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGTEIRKRNP
DDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVI
PKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRT
TGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRG
NDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGPGNAPKLSTK
TKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVL
DSAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLA
DQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAF
GGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEA
ALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWL
LTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPD
KTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMI
PHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSD
LSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..960
/gene="ORF1"
/product="p48"
mat_peptide 961..2058
/gene="ORF1"
/product="NTPase"
mat_peptide 2059..2595
/gene="ORF1"
/product="p22"
mat_peptide 2596..2994
/gene="ORF1"
/product="VPg"
mat_peptide 2995..3537
/gene="ORF1"
/product="Pro"
mat_peptide 3538..5067
/gene="ORF1"
/product="RdRp"
gene 5051..6673
/gene="ORF2"
CDS 5051..6673
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55873.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNFRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6673..7452
/gene="ORF3"
CDS 6673..7452
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55874.1"
/translation="MAGAFIAGLAGDLLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSPVPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ggcaaaaaca acaacaacga caaggaaaaa tcttcaagtg acagcttgtt tgctaatatg
61 tctgtcactt ttaagaaagc cctcggggcg cggtctaaac aaccgccccc gggagaaaca
121 aaacaaatac aaaaaccacc aaggccaccg acaccggaat tggtgaagag aatacctcca
181 cccccaccta atggcgggga tgaaccaggg atagtgtaca aggtgggaga gggtgtgtct
241 gggctgcccg acctaacaac tgtggcacaa cctgacgcac aaaacacagc ttacagtgtt
301 cccccactta gccagagaga agtcggcgaa gctaaagaac cgctgcctgg ctccattctg
361 gaaatgtggg atggtgagat ctaccactat gggctgtatg ttgagcgggg gcatgtgctc
421 ggagtacaca aaccacctgc tgcaataagc cttgccaaaa ttgaaataac accgctgtct
481 ctctactgga gagtggtcta cactccccag tatttgatag atccaggaac tcttaagaac
541 ttgagtggag agactttccc atacacggcc tttgacaata actgctatgc cttctgttgc
601 tgggtcctag acctcaacga ctcctggctt agcaggagaa tgatccaaag aacaactgga
661 tttttcaaac cctatcagga ttggaacaga aaacccttac caaccatgga tgaaccgaaa
721 atcaagaagg ccgcgaacgc tgtcctatgc gctctctcct cactcttcac tagacccatt
781 aaggacatca ttgggaagct tagaccactg aacattctta atatactggc aacctgcgat
841 tggacttttg caggcatagt ggaatccttg atccttcttg ctgaactctt tggggtgttc
901 tggacacccc cagatgtgtc tgcgatgatt gctcccttac tcggcgacta cgagatgcaa
961 ggccccgaag acctggctgt ggaacttgta cccgtggtga tgggaggaat aggtttggtg
1021 ttaggattca ccaaagaaaa gatcggcaag atgctttcat cagctgcgac cacacttagg
1081 gcctgcaagg atttaggatc ttatggactg gagatactca aattggtcat gaagtggttc
1141 ttccccaaaa aggaggaggc taacgaacta gccatggtga gggccattga ggatgcagtc
1201 ctggatttgg aggcaataga aaacaatcac atgaccaccc ttctcaagga taaagacagc
1261 ctggccacat acatgaggac tcttgacttg gaagaagaga gagcaaggaa actgtcgacc
1321 aaatcggcgt cacctgacat cgtgggtaca ataaacgcac tgctggctag gatagcagcc
1381 gccagatcac tggtccacaa ggctaaggag gagctctcga gcagacagag gcctgttgtt
1441 gtaatgatat caggtagacc aggtatagga aagacccatc tggccagaga gctagccaag
1501 aaagtcgcgt caacactgtc aggcgaccaa agaatcggac tggtacctag gaatggtgtc
1561 gaccattggg acgcctacaa gggagaaagg gtggtcctgt gggatgatta tggtatgagc
1621 aaccctatac aggacgcact gaggctccaa gaattggctg acacctgtcc tctgacccta
1681 aattgtgata ggattgaaaa caaaggaaaa gtgttcgaca gtgacgccat aattataaca
1741 accaaccttg caaacccagc accactagac tatgtcaact ttgaggcctg ctctagacgc
1801 atagacttct tggtgtatgc agacgcacct gacattgaga aggctaagcg tgacttccct
1861 ggtcaaccag atatgtggaa agaccatttc agaccagact tctcacacat taaacttcag
1921 ctggcaccac agggaggttt tgacaaaaat ggcaacaccc cacatggcaa aggtgtggta
1981 aagtccctga cgattggttc cctgatcgcc agggcctccg gcttgctcca cgagcgaatg
2041 gatgagttcg agctccaagg ctctgacctg ccaaccttca attttgaccg caataaagtc
2101 gccgccttca gacaattggc agctgaaaac aaatatggtc ttatggacac attgagggtc
2161 ggcaaccaac tgaaaagtgt taagaccctg gatgagctga agcaggctat aaagaacatc
2221 agtatcaaga agtgtcaaat agtgtataat ggatgcacct atactatgga atctgatggg
2281 aggggcaagg ttgtggttga aaaggtacaa aacgcaacag ttcaaaccaa caatgaactc
2341 gtaggggcac tccaccacct gagatctgca aggataagat actatgttaa atgtttccaa
2401 gaagccattt actctctact ccaaattgct ggcgcagcct ttgtcacctc acgcatcgtg
2461 aggcgcatga acatatcaaa cctctggtcg aagccaccca ttgaggaggg tgatgagcct
2521 gaggacagag gagggtgccc caagcccagg gatgaagatg acctcactat tgactctaga
2581 gacattaaag tagaagggaa aaagggcaag aacaagtctg gccggggcaa gaaacacaca
2641 gccttctctt ccaagggcct cagtgatgaa gagtacgatg agtacaagag aatcagagag
2701 gagaggaatg gcaaatactc aatagaggaa tacctccaag acagggacag gtactatgaa
2761 gagcttgcca ttgctaaggc cactgaggaa gacttctgtg aagaggagga gatcaaaatc
2821 cgccagagaa tcttccgacc caccaggaag caacggaaag aggaaagggc cacgctcggg
2881 cttgtcacag gaacggaaat cagaaagagg aatccagatg attttaaacc aaaaggaaaa
2941 ttgtgggctg atgacaacag gagcgtggat tacaatgaga ggatagattt tgaggctccc
3001 ccgagtgttt ggtctaggat agtcaacttt ggcacaggct ggggattctg ggtctctcca
3061 agtctcttta taacttcaac acacgtcata ccaaaaggaa tcactgaggc ctttggagtg
3121 cccataaatc aaatccaaat ccataaatct ggagaatttt gccgcttgcg gtttccaaag
3181 ccaattagac cagacgtgag tgggatgatc ttggaagagg gcgcccctga aggcactgtt
3241 gtgtctattc tcatcaaaag gacaacaggg gagctgatgc ctcttgcagt cagaatgggg
3301 actcatgcca caatgaaaat ccaaggtaga acggtgggtg gtcagatggg tatgcttctc
3361 actggctcaa atgctaaagg catggatcta ggcacaacgc caggtgactg tggatgtcca
3421 tacatataca aaaggggcaa tgaccttgtg gtcattgggg tgcacactgc agcagctcgt
3481 ggaggcaaca cggtcatatg tgccacacag ggaagtgagg gtgaagccac tcttgaagga
3541 gatgacaaca agggcaccta ttgtggagcc cccattttgg gacctggcaa cgcaccaaaa
3601 ttaagcacaa agacaaaatt ctggagatcc tctaacgcac cgcttccccc aggtacttat
3661 gaaccagcat accttggtgg gagggacccg cgcgtgaagg gaggcccatc tctgcaacaa
3721 gttatgagag atcaactcaa accttttaca gagcccagag ggaagccacc aaacccaaat
3781 gtcttagatt cagcaaagaa gactatcatc aatgttctgg aacagaccat tgaccctcct
3841 caaaagtggt catatgccca agcttgtgca tcccttgaca agacaacctc cagtggatac
3901 ccgcaccacg ttcggaagaa tgactactgg agtggtgaat ccttcacagg aaaacttgca
3961 gatcaggctt caaaagcaaa tctcatgtat gaggaaggca agcacatgca accagtttac
4021 accgcagcac tcaaagacga gctcgtgaaa actgacaaaa tttatggcaa aatcaagaag
4081 agactcctat ggggctctga tctctccaca atgattcgat gtgccagagc atttggtggt
4141 ctcatggatg aactcaaagc aaattgtatt acactcccta tcagagttgg tatgaatatg
4201 aatgaagatg gtcccataat atttgagaaa cactccaggt acaggtacca ctatgatgct
4261 gattactccc gctgggactc cacacaacag cgggcagtgc tggaagcggc acttgaaatc
4321 atggtgagat tttctgctga gccacagctg gcacaaatag tggcagagga cctgctgtca
4381 ccaagtgtgg ttgatgtggg cgatttcaaa atcgctatca atgaaggcct accatctggc
4441 gtgccttgca cctcacaatg gaactctatt gcccactggt tacttacctt gtgtgccctt
4501 tctgaagtga cgggattagg tcctgacatc attcaagcta actccatgta ctctttctat
4561 ggtgatgatg agattgtgag cacagacata aaattggacc cagagaaatt aaccgcaaag
4621 ctcaaagaat atggccttaa acccactcgg cccgacaaaa ctgagggacc gttggtgatt
4681 agtgaggacc tgaatgggtt aactttcctt cgccggacag tcacccgtga tccagcaggt
4741 tggtttggaa agttggacca aaactccatc ctcaggcagt tgtactggac aagaggaccc
4801 aaccatgaag accccagtga gaccatgata ccacacgcac aaagacctgt gcagctcatg
4861 gcactactag gagagtcctc tctacatgga ccctcatttt acagcaaggt tagcaagtta
4921 gtcatatctg aacttaaaga gggaggaatg gatttttatg tgcccagaca agaatcaatg
4981 ttcagatgga tgaggttctc agatctaagc acatgggagg gcgatcgcaa tctggctccc
5041 agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg
5101 tctcgtacca gagggcaaca acgagaccct tcccctagaa ccagttgcgg gcgcagctat
5161 agccgcaccc gtcactggcc aaaataatat aattgacccc tggattagaa caaactttgt
5221 gcaagcacca aatggagagt tcacagtgtc acccagaaac tctcctggag aaattttatt
5281 aaatttagag ttgggccctg atttgaaccc ttatttggct catttgtcaa ggatgtacaa
5341 tgggtatgct ggtggagtgg aagttcaggt tctcctggca gggaacgcgt tcactgccgg
5401 aaagatcctc ttcgccgccg ttccgccaaa cttcccagtg gaattcttaa gcccagccca
5461 gattacaatg ctcccacact taatagtaga tgtcaggact cttgaaccaa tcatgatccc
5521 actccctgat gttaggaaca cattcttcca ttataataat cagcccaaca gccgtatgag
5581 attagtggct atgctctaca ccccactcag atctaacggt tcaggtgatg acgtctttac
5641 tgtctcttgt agggttttga ctaggcctac tcctgatttt gagttcactt atttagtgcc
5701 accttctgtt gaatccaaaa ccaagccttt ttccctacct attttaaccc tttctgagct
5761 cacaaattcg agatttccag tccccatcga ttcgcttttt accgcccaga ataatgtgtt
5821 gcaggtgcag tgtcaaaatg gcaggtgtac acttgatggt gagctacaag gcacaaccca
5881 gttgctccca accggcatct gtgcattcag aggacgggtg acagcacaaa tcaaccaacg
5941 tgacaggtgg cacatgcaac tgcaaaacct caatggtaca acatatgacc caactgatga
6001 tgtgccagcc ccgctgggta cacctgactt caagggcgtc gtgtttggaa tggtaagcca
6061 aagaaatgtg ggtagtgatg cgcctggctc aaccagagcc caacaggcgt gggtttcaac
6121 ctatagcccc caatttgtcc ccaaattagg ttctgtcaat tttagaatta gtaacaatga
6181 tgacttccaa ttccagccaa caaaattcac accagtgggc atcaatgatg atgatgatga
6241 tcacccattc agacagtggg agctaccaaa ttattcaggg gagcttacct tgaacatgaa
6301 tctcgccccc ccagttgctc caaattttcc tggtgaacaa ttgttattct tcagatcttt
6361 cgtgccatgc tcaggaggtt acaaccaagg tattatagat tgtcttattc cccaagaatg
6421 gatccaacat ttctatcagg aatcagcacc ctcccagtca gacgtggccc taatcagata
6481 tgtcaacccc gacacgggac gtacactgtt tgaagcaaaa ttgcacagat ctggttacat
6541 cactgtggct cactctggag attatcctct tgttgttccg gctaatggac actttagatt
6601 tgattcttgg gtaaatcagt tttactcact cgccccaatg ggaactggga atgggcgaag
6661 gagggctcag taatggctgg ggctttcatt gcaggattgg caggcgactt gctcacgtca
6721 tctgtgggct cccttgtgaa cgcaggggca aacgccatca accaaaaggt agactttgaa
6781 aacaataaac aactccagtc tgcttccttt cagcatgata aagagatgct ccaagcacag
6841 gtgagggcaa ccaagcagct gcaatctgaa atgatagccc taaaacaggg ggttttggcc
6901 gcaggcggct tttcccccac tgatgcagca aggggatcca ttggtgcacc catgacaaag
6961 gtgcttgact ggtctggcac tcgatactgg gcgcccaatt ccacaaagac aactggctat
7021 tcgggacaat tcacctcttc acctgtgcat atgtctagcc caaacgctcc acaatcaaaa
7081 cctgcaaagc ctaggtctcc agttccttcc tcctcatcta gtagtgttta tagtatgtat
7141 actcaatcta ctcatttgac atctggctct tctagtaatg cttcttctgc ctctacaaag
7201 ttgacaaatt taagctctgg ctcctctcaa aacagaacag cagagtgggt gaatcaacag
7261 agaagtctta gccctttcat gagtggcgca cttaacatct cacatgttac accaccctca
7321 agtagggctt ccagttctgg gacggtctca accgtgccca aggaagtttt ggactcctgg
7381 acgtctgcgt ttaacacaca cagacagccg ctcttcgcac acctcagggt gaggggggag
7441 tcacgtgttt agtgaaaaga aataattggc tataatgtga tttctttcta aatttggcta
7501 atttgtatct ttt
//