Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234786 | GII.17 | |
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| GII.P17 |
ORF1: 1..5080
ORF2: 5061..6677
ORF3: 6677..7456
LOCUS PZ234786 7484 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20241151 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234786
VERSION PZ234786.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7484)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7484)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7484
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20241151"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="20-Aug-2024"
/note="genotype: GII.17[P17]"
gene <1..5080
/gene="ORF1"
CDS <1..5080
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="YDR55836.1"
/translation="AVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPGETK
QTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTAYS
VPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIELT
PLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMV
QRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLNIM
NILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVELVP
VVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANE
LAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASPDI
VGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVAST
LSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCD
RIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPG
QPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLLHER
MDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAI
KNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIRYY
VKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPRDED
DLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEY
LQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRK
RNPDDFKPKGKLWADDDRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITST
HVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILI
KRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIY
KRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKL
STKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKP
SVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTG
KLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCA
RAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAV
LEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIA
HWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPT
RPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSE
TMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMR
FSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..970
/gene="ORF1"
/product="p48"
mat_peptide 971..2068
/gene="ORF1"
/product="NTPase"
mat_peptide 2069..2605
/gene="ORF1"
/product="p22"
mat_peptide 2606..3004
/gene="ORF1"
/product="VPg"
mat_peptide 3005..3547
/gene="ORF1"
/product="Pro"
mat_peptide 3548..5077
/gene="ORF1"
/product="RdRp"
gene 5061..6677
/gene="ORF2"
CDS 5061..6677
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55837.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6677..7456
/gene="ORF3"
CDS 6677..7456
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55838.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tgccgttgct ggcaaaaaca acaacaacga caatgtaaaa tcttcaagtg acagcttgtt
61 ttctaacatg actgttactt ttaagaaagc cctcggggcg cggtctaagc agccgccccc
121 gggagaaaca aaacaaacac taagaccacc aaggccgccg acaccggaat tggtgaagaa
181 gataccccca ccccccccca atggcgagga tgaaccaaag gtaacgtata aggtgggaga
241 aggtgtgtct gggctgcccg acttaacaac cgtggcacaa cctgatgcac agaacacagc
301 ctatagtgtc cccccactta gccagagaga ggtcggcgaa gctagagaac cgttgcctgg
361 ctccattctg gaaatgtggg atggtgagat ctaccactat gggctgtatg ttgagcgggg
421 gcatgtgctg ggagtgcaca aaccacctgc tgcaataagc cttgccaaaa ttgagttaac
481 accgctgtct ctctactgga gagtggtcta cactccccag tacttgatag ctccagagac
541 cctcaagaat ttaaatggag agactttccc atacacggcc tttgacaaca actgttatgc
601 cttctgttgt tgggttctag acctcaacga ctcctggctt agcagaagaa tggtccaaag
661 aacaaccgga ttcttcagac cgtatcagga ctggaacaga aaacccttac caaccatgga
721 tgaaccaaaa atcaagaagg ccgcgaatgc tgttctgtgt gctctctcct cactcttcac
781 taggcccatc aaagatgtca ttggaaagct taaaccacta aacattatga acatactggc
841 aacttgtgat tggacttttg cgggcatagt ggaatccatg atccttcttg ctgaactctt
901 tggggtgttc tggacgcccc cagatgtgtc tgcaataatt gctcccttac tcggtgacta
961 cgagatgcaa ggccccgaag acctggccgt ggaacttgtg cccgtggtaa tgggaggaat
1021 aggtttggtg ttaggattca ccaaggaaaa gatcggcaag atgctttcat cagctgcaac
1081 cacactcagg gcctgtaagg atctaggatc ttatgggttg gagatactca aactggtcat
1141 gaagtggttc ttccccaaga aggaggaggc caacgagtta gccatggtga gggccattga
1201 ggatgcagtt ctggatttgg aggcaataga aaacaaccac atgaccactc tccttaagga
1261 caaagacgcc ctggccacat acatgaggac tcttgacttg gaagaagaaa aagcaaggaa
1321 actatcttcc aaatcggcgt cacctgacat cgtgggcaca gtaaacgcat tattggcaag
1381 aatagcagcc gccaggtcac tggtccacaa ggctaaggag gagctctcga gcagacagag
1441 acctgttgtt gtaatgatat caggcaggcc aggtatagga aagacccatc tggccagaga
1501 gctagccaag aaggttgcgt caacactgtc aggcgaccaa aggattggac tgatacccag
1561 aaatggcgtc gaccattggg acgcctacaa aggagagcgg gtggttctgt gggatgacta
1621 tggcatgagc aaccctatac aggacgcact gaggctccaa gaattggctg acacctgtcc
1681 tctgacccta aattgtgaca gaattgaaaa caaaggaaaa gtgttcgaca gtgacgccat
1741 aatcataacg accaaccttg caaacccagc accattggat tatgtcaact ttgaggcttg
1801 ttccagacgc atagacttct tggtgtatgc agacgcacct gacatcgaga aggctaagcg
1861 tgactttcct ggccaaccag atatgtggaa agaccattac agaccagact tctcacacat
1921 taaacttcag ctcgcaccac agggaggctt tgataagagt ggcaacaccc cacatggcaa
1981 aggcgtggtt aagtctctga cgattggctc tctgatcgcc agggcttctg gcttgctcca
2041 tgagagaatg gatgaattcg agctccaagg ccccaactta ccaaccttca atttcgaccg
2101 taacaaagtc gccgccttca gacaattggc agctgaaaac aaatacggtc ttatggacac
2161 actgagggtc ggcaaccaac tgaaaagtgt caaaaccctg gatgagctga agcaggccat
2221 aaagaacatt accatcaaga agtgccagat agtgtacaat ggatgcacct acaccatgga
2281 atctgatggg aggaacaagg ttgtggttga aaaggttcaa aatgcaacag tccaaaccaa
2341 caatgaactt gcaggagcac tccaccacct gagatctgca agaataaggt attatgtcaa
2401 atgtttccaa gaagctattt actctatact ccaaattgct ggtgcagcct tcgtcaccac
2461 acgcatcgtg aggcgcatga acatctcaaa cctctggtcg aagccacccg tcgaagaggg
2521 tgatgagcct gaagacaaag gggggtgccc caagcccagg gatgaagatg acctcactat
2581 tgactccaaa gacattaaag cagaaggtaa gaagggcaag aacaaatctg gccggggcaa
2641 gaaacacaca gctttctcat ccaagggcct cagtgatgaa gagtacgatg agtacaagag
2701 aatcagggag gagagaaatg gcaagtactc aatagaagaa tacctccagg atagggatag
2761 atactatgaa gagcttgcca ttgctaaggc cactgaggaa gacttctgtg aagaggagga
2821 aatcaaaatt cgccagagaa tcttccggcc caccaggaag cagcggaaag aggaaagagc
2881 cacgcttggg ctcgtcacag gatcggaaat cagaaagagg aacccagatg attttaagcc
2941 aaaaggaaaa ttgtgggctg atgacgacag gagtgtggac tacaatgaga ggatagattt
3001 tgaggctccc ccaagtgttt ggtctaggat agtcaacttt ggaacaggat ggggattctg
3061 ggtctcccca agtctcttta taacttcaac acatgtcata ccaaaaggaa ttactgaggc
3121 ctttggagtt cccattaacc aaattcaaat tcacaaatct ggagagtttt gccgcttgcg
3181 gtttccaaaa ccaatcaggc cagacgtgag tggaatgatc ttggaagagg gtgcccctga
3241 aggcactgtt gtttccattc tcatcaagag gacgacaggg gaactgatgc ctctcgcagt
3301 cagaatggga actcatgcca caatgaaaat ccaaggtaga acggtgggcg gtcaaatggg
3361 catgcttctc actggctcaa acgccaaaag catggaccta ggcacaacac caggtgactg
3421 tgggtgccca tacatataca aaaggggcaa tgacttcgtg gtcattgggg tgcacactgc
3481 agcagcccgt ggaggtaaca cggtcatatg tgccacacag gggagtgaag gcgaagccac
3541 cctcgaagga ggtgacaaca agggcaccta ttgtggagcc cccatcttgg gtcctggcaa
3601 cgcaccaaaa ttgagcacaa aaacaaaatt ctggagatct tctaacgcgc cgctcccgcc
3661 aggcacctac gaaccagcat accttggtgg aaaagacccg cgtgtgaagg gaggcccatc
3721 tctacaacag gttatgagag accaactcaa accttttaca gagcccagag ggaagccacc
3781 aaaaccaagt gtcctagaat cagcaaagaa gaccatcatt aatgttctgg aacaaaccat
3841 tgacccccct gaaaagtggt catatgccca agcttgtgca tccctcgaca agacaacctc
3901 cagtggatac ccgcatcacg tccggaagaa tgactactgg agtggtgaat ccttcacggg
3961 gaaacttgca gaccaggcct caaaagcaaa tctcatgtat gaggaaggta agcacatgca
4021 accagtttac accgcagcac tcaaagacga gctcgtgaaa actgacaaaa tttatggcaa
4081 gatcaagaaa agactcctgt ggggctctga cctatccacc atgattcgat gcgccagggc
4141 atttggtggc ctcatggacg agctcaaagc aaattgtatc acactcccta tcagagttgg
4201 tatgaacatg aatgaagatg gtcccataat atttgaaaag cactccaggt acaggtacca
4261 ctatgatgct gattattccc gctgggattc cacacaacag cgggcagtgc tggaagcggc
4321 acttgaaatc atggtgagat tttctgctga gccacagttg gcacaaatag tggcagagga
4381 cctgctatca ccaagtgtgg ttgatgtggg cgatttcaaa attactatta atgaaggcct
4441 accatctggc gtgccttgca cttcacaatg gaattctatt gcccactggt tactcaccct
4501 atgtgccctg tctgaagtga caggactagg ccctgacatc atacaagcca actccatgta
4561 ctctttctat ggtgatgatg agattgtgag cacagacata aaattagacc cagagaaatt
4621 gactgcaaaa ctcaaagaat atggtcttaa acccacccgg cctgacaaga ctgaggggcc
4681 actggtaatt agtgaggacc tgaatgggtt gactttcctc cgccgaacag tcacccgcga
4741 tccagcgggt tggtttggaa agttggacca aaactccatc ctcagacagc tgtactggac
4801 aaggggaccc aaccatgaag accccagtga gactatgata ccacacgcac agagacctgt
4861 gcagctcatg gcattgctag gagaatcctc cctacatgga ccctcatttt acagcaaggt
4921 tagcaaactg gttatatctg aacttaaaga gggaggaatg gatttttatg tgcccagaca
4981 agagtcaatg ttcaggtgga tgaggttctc agatctaagc acatgggagg gcgatcgcaa
5041 tctggctccc agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg
5101 gtgctgctgg tctcgtacca gagggcaata acgagaccct tcccctagaa ccagttgcgg
5161 gcgcagccat agccgcaccc gtcactggcc aaaataatat aattgacccc tggattagaa
5221 caaattttgt gcaagcacca aatggagagt tcacagtgtc acccagaaac tctcctggag
5281 aaattttact aaacctagag ttgggccctg atctgaaccc ttatttggct catttgtcaa
5341 ggatgtataa tggatatgct ggtggagttg aagtccaggt tctcctggca gggaacgcgt
5401 tcactgccgg gaagatcctc ttcgccgctg tcccgccaaa ttttccggtg gaattcttaa
5461 gcccagccca gattacaatg ctcccacata taatagtaga tgttaggact cttgaaccaa
5521 ttatgatccc attacctgat gttaggaata cattcttcca ctataataat cagcccaaca
5581 gccgcatgag attagtggct atgctctaca ccccccttag atctaatggt tcaggtgatg
5641 atgtttttac tgtttcttgc agggttttga ctaggcctac tcctgatttt gagttcactt
5701 atctagtgcc accctctgtt gaatctaaga ctaaaccctt ttctttaccc attctaaccc
5761 tttctgagct cacaaattcg aggttcccgg tccccatcga ttcgcttttc accgcccaaa
5821 ataatgtgtt gcaggtgcag tgtcaaaatg gcaggtgcac acttgacggt gagctacaag
5881 gcacaaccca gttgctccca tctggcatct gtgcgttcag gggacgggtg acagcagaaa
5941 ctgacaatcc tgacaagtgg cacatgcaac tgcaaaacct taatggcaca acatatgacc
6001 caactgatga tgtgccagcc ccactgggta cacctgactt caagggcgtc gtgtttggga
6061 tggcaagcca aagaaatgtg ggtaacgacg cgcccggctc aaccaggtcc catgaggcgg
6121 tgatttcaac ctacagcccc agatttgttc ctaaattagg ctctgtcaat ttcaaaagca
6181 atgacgatga tttccaattg cagccaacaa gattcacacc agtgggcatt aatgatgatg
6241 gcaaccaacc attcagacaa tgggaactac cagattattc aggagtgctt accttgaata
6301 tgaaccttgc cccccctgtt gctccaaatt tccctggcga acaattacta ttcttcagat
6361 cttctgtgcc atgttcagga ggttacaacc aaggtattat agattgcctt atcccccaag
6421 aatggatcca acacttctac caggaatcag caccttctca gtcagaagtg gccctaatca
6481 ggtacgtcaa ccccgacacg ggtcgtacac tgtttgaggc aaaattgcat aggtcaggct
6541 atatcactgt ggctcattct ggagactatc ctcttgttgt tccggctaat ggatacttta
6601 gatttgactc ttgggtaaat cagttttact cactcgcccc aatgggaact gggaatgggc
6661 gaaggagggc tcagtaatgg ctggagcttt cattgcagga ttggcgggtg acatgctcac
6721 gtcatccgtg ggctccctgg tgaacgcagg ggcaaacgcc atcaaccaaa agatagactt
6781 tgaaaacaac aaacaactcc agtctgcttc ctttcaacat gataaagaga tgctccaagc
6841 gcaggtgaac gcaaccaagc agctgcagtc tgagatgata gccctaaaac agggggtttt
6901 ggccgcaggc ggcttttccc ccactgatgc agcgaggggg gccatcggtg cacccatgac
6961 aaaggtgctt gactggtctg gcactcgata ctgggctccc aattccacaa agacaactgg
7021 ttattcgggg caattcacct cttcacctgt gcacatgccc agcccgagtg tcccacaatc
7081 aaaacccgca aagcccaagt ctctaggttc ttcttcttct tctagtagtg tttacagtat
7141 gtctacccaa ttaacttctc taacatctgg ctcttctagt aatgcttctt ctgcttctac
7201 aaaattgaca aatttgagct ccggctcttc tcaaaacaga acagcagagt gggtgaacca
7261 acagagaagt ctcagccctt tcatgagtgg cgcactcaat atctcacatg tcacgccacc
7321 ttcaagtagg gcctccagtt ctgggacggt ctcaaccgtg cccaaggaag ttttggactc
7381 ctggacatct gcattcaaca cacacagaca gccgctcttc gcacacctca gagtgagggg
7441 ggagtcacgt gtttagtgaa aagaaataat tggctataat atga
//