Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234785 | GII.17 | |
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| GII.P17 |
ORF1: 1..5084
ORF2: 5065..6681
ORF3: 6681..7460
LOCUS PZ234785 7488 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20241147 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234785
VERSION PZ234785.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7488)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7488)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7488
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20241147"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="20-Aug-2024"
/note="genotype: GII.17[P17]"
gene <1..5084
/gene="ORF1"
CDS <1..5084
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="YDR55833.1"
/translation="VAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPGET
KQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTAY
SVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEL
TPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
VQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLNI
MNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEAN
ELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASPD
IVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVAS
TLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNC
DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFP
GQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVIKSLTIGSLIARASGLLHE
RMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKCVKTLDELKQA
IKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIRY
YVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPRDE
DDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR
KRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITS
THVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSIL
IKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPK
LSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPK
PSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFT
GKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRC
ARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRHHYDADYSRWDSTQQRA
VLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP
TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPS
ETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..974
/gene="ORF1"
/product="p48"
mat_peptide 975..2072
/gene="ORF1"
/product="NTPase"
mat_peptide 2073..2609
/gene="ORF1"
/product="p22"
mat_peptide 2610..3008
/gene="ORF1"
/product="VPg"
mat_peptide 3009..3551
/gene="ORF1"
/product="Pro"
mat_peptide 3552..5081
/gene="ORF1"
/product="RdRp"
gene 5065..6681
/gene="ORF2"
CDS 5065..6681
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55834.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6681..7460
/gene="ORF3"
CDS 6681..7460
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55835.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ccgttgccgt tgctggcaaa aacaacaaca acgacaatgt aaaatcttca agtgacagct
61 tgttttctaa catgactgtt acttttaaga aagccctcgg ggcgcggtct aagcagccgc
121 ccccgggaga aacaaaacaa acactaagac caccaaggcc gccgacaccg gaattggtga
181 agaagatacc cccacccccc cccaatggcg aggatgaacc aaaggtaacg tataaggtgg
241 gagaaggtgt gtctgggctg cccgacttaa caaccgtggc acaacctgac gcacagaaca
301 cagcctatag tgtcccccca cttagccaga gagaggtcgg cgaagctaga gaaccgttgc
361 ctggctccat tctggaaatg tgggatggtg agatctacca ctatgggctg tatgttgagc
421 gggggcatgt gctgggagtg cacaaaccac ctgctgcaat aagccttgcc aaaattgagt
481 taacaccgct gtctctctac tggagagtgg tctacactcc ccagtacttg atagctccag
541 agaccctcaa gaatttaaat ggagagactt tcccatacac ggcctttgac aacaactgtt
601 atgccttctg ttgttgggtt ctagacctca acgactcctg gcttagcaga agaatggtcc
661 aaagaacaac cggattcttc agaccgtatc aggactggaa cagaaaaccc ttaccaacca
721 tggatgaacc aaaaatcaag aaggccgcga atgctgttct gtgtgctctc tcctcactct
781 tcactaggcc catcaaagat gtcattggaa agcttaaacc actaaacatt atgaacatac
841 tggcaacttg tgattggact tttgcgggca tagtggaatc catgatcctt cttgctgaac
901 tctttggggt gttctggacg cccccagatg tgtctgcaat aattgctccc ttactcggtg
961 actacgagat gcaaggcccc gaagacctgg ccgtggaact tgtgcccgtg gtaatgggag
1021 gaataggttt ggtgttagga ttcaccaagg aaaagatcgg caagatgctt tcatcagctg
1081 caaccacact cagggcctgt aaggatctag gatcttatgg gttggagata ctcaaactgg
1141 tcatgaagtg gttcttcccc aagaaggagg aggccaacga gttagccatg gtgagggcca
1201 ttgaggatgc agttctggat ttggaggcaa tagaaaacaa ccacatgacc actctcctta
1261 aggacaaaga cgccctggcc acatacatga ggactcttga cttggaagaa gaaaaagcaa
1321 ggaaactatc ttccaaatcg gcgtcacctg acatcgtggg cacagtaaac gcattattgg
1381 caagaatagc agccgccagg tcactggtcc acaaggctaa ggaggagctc tcgagcagac
1441 agagacctgt tgttgtaatg atatcaggta ggccaggtat aggaaagacc catctggcca
1501 gagagctagc caagaaggtt gcgtcaacac tgtcaggcga ccaaaggatt ggactgatac
1561 ccagaaatgg cgtcgaccat tgggacgcct acaaaggaga gcgggtggtt ctgtgggatg
1621 actatggcat gagcaaccct atacaggacg cactgaggct ccaagaattg gctgacacct
1681 gtcctctgac cctaaattgt gacagaattg aaaacaaagg aaaagtgttc gacagtgacg
1741 ccataatcat aacgaccaac cttgcaaacc cagcaccatt ggattatgtc aactttgagg
1801 cttgttccag acgcatagac ttcttggtgt atgcagacgc acctgacatc gagaaggcta
1861 agcgtgactt tcctggccaa ccagatatgt ggaaagacca ttacagacca gacttctcac
1921 acattaaact tcagctcgca ccacagggag gctttgataa gagtggcaac accccacatg
1981 gcaaaggcgt gattaagtct ctgacgattg gctctctgat cgccagggct tctggcttgc
2041 tccatgagag aatggatgaa ttcgagctcc aaggccccaa cttaccaacc ttcaatttcg
2101 accgtaacaa agtcgccgcc ttcagacaat tggcagctga aaacaaatac ggtcttatgg
2161 acacactgag agtcggcaac caactgaaat gtgtcaaaac cctggatgag ctgaagcagg
2221 ccataaagaa catcaccatc aagaagtgcc agatagtgta caatggatgc acctacacca
2281 tggaatctga tgggaggaac aaggttgtgg ttgaaaaggt tcaaaatgca acagtccaaa
2341 ccaacaatga acttgcagga gcactccacc acctgagatc tgcaagaata aggtattatg
2401 tcaaatgttt ccaagaagct atttactcta tactccaaat tgctggtgca gccttcgtca
2461 ccacacgcat cgtgaggcgc atgaacatct caaacctctg gtcgaagcca cccgtcgaag
2521 agggtgatga gcctgaagac aaaggggggt gccccaagcc cagggatgaa gatgacctca
2581 ctattgactc caaagacatt aaagcagaag gtaagaaggg caagaacaaa tctggccggg
2641 gcaagaaaca cacagctttc tcatccaagg gcctcagtga tgaagagtac gatgagtaca
2701 agagaatcag ggaggagaga aatggcaagt actcaataga agaatacctc caggataggg
2761 atagatacta tgaagagctt gccattgcta aggccactga ggaagacttc tgtgaagagg
2821 aggaaatcaa aattcgccag agaatcttcc ggcccactag gaagcagcgg aaagaggaaa
2881 gagccacgct tgggctcgtc acaggatcgg aaatcagaaa gaggaaccca gatgatttta
2941 agccaaaagg aaaattgtgg gctgatgaca acaggagtgt ggactacaat gagaggatag
3001 attttgaggc tcccccaagt gtttggtcta ggatagtcaa ctttggtaca ggatggggat
3061 tctgggtctc cccaagtctc tttataactt caacacatgt cataccaaaa ggaattactg
3121 aggcctttgg agttcccatt aaccaaattc aaattcacaa atctggagag ttttgccgct
3181 tgcggtttcc aaaaccaatc aggccagacg tgagtggaat gatcttggaa gagggtgccc
3241 ctgaaggcac tgttgtttcc attctcatca agaggacgac aggggaactg atgcctctcg
3301 cagtcagaat gggaactcat gccacaatga aaatccaagg tagaacggtg ggcggtcaaa
3361 tgggcatgct tctcactggc tcaaacgcca aaagcatgga cctaggcaca acaccaggtg
3421 actgtgggtg cccatacata tacaaaaggg gcaatgactt cgtggtcatt ggggtgcaca
3481 ctgcagcagc ccgtggaggt aacacggtca tatgtgccac acaggggagt gaaggcgaag
3541 ccaccctcga aggaggtgac aacaagggca cctattgtgg agcccccatc ttgggtcctg
3601 gcaacgcacc aaaattgagc acaaaaacaa aattctggag atcttctaac gcgccgctcc
3661 cgccaggcac ctacgaacca gcataccttg gtggaaaaga cccgcgtgtg aagggaggcc
3721 catctctaca acaggttatg agagaccaac tcaaaccttt tacagagccc agagggaagc
3781 caccaaaacc aagtgtccta gaatcagcaa agaagaccat cattaatgtt ctggaacaaa
3841 ccattgaccc ccctgaaaag tggtcatatg cccaagcttg tgcatccctc gacaagacaa
3901 cctccagtgg atacccgcat cacgtccgga agaatgacta ctggagtggt gaatccttca
3961 cggggaaact tgcagaccag gcctcaaaag caaatctcat gtatgaggaa ggtaagcaca
4021 tgcaaccagt ttacaccgca gcactcaaag acgagctcgt gaaaactgac aaaatttatg
4081 gcaagatcaa gaaaagactc ctgtggggct ctgacctatc caccatgatt cgatgcgcca
4141 gggcatttgg tggcctcatg gacgagctca aagcaaattg tatcacactc cctatcagag
4201 ttggtatgaa catgaatgaa gatggtccca taatatttga aaagcactcc aggtacaggc
4261 accactatga tgctgattat tcccgctggg attccacaca acagcgggca gtgctggaag
4321 cggcacttga aatcatggtg agattttctg ctgagccaca gttggcacaa atagtggcag
4381 aggacctgct atcaccaagt gtggttgatg tgggcgattt caaaattact attaatgaag
4441 gcctaccatc tggcgtgcct tgcacttcac aatggaattc tattgcccac tggttactca
4501 ccctatgtgc cctgtctgaa gtgacaggac taggccctga catcatacaa gccaactcca
4561 tgtactcttt ctatggtgat gatgagattg tgagcacaga cataaaatta gacccagaga
4621 aattgactgc aaaactcaaa gaatatggtc ttaaacccac ccggcctgac aagactgagg
4681 ggccactggt aattagtgag gacctgaatg ggttgacttt cctccgccga acagtcaccc
4741 gcgatccagc gggttggttt ggaaagttgg accaaaactc catcctcaga cagctgtact
4801 ggacaagggg acccaaccat gaagacccca gtgagactat gataccacac gcacagagac
4861 ctgtgcagct catggcattg ctaggagaat cctccctaca tggaccctca ttttacagca
4921 aggttagcaa actggttata tctgaactta aagagggagg aatggatttt tatgtgccca
4981 gacaagagtc aatgttcagg tggatgaggt tctcagatct aagcacatgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccgc tccatctaat
5101 gatggtgctg ctggtctcgt accagagggc aataacgaga cccttcccct agaaccagtt
5161 gcgggcgcag ccatagccgc acccgtcact ggccaaaata atataattga cccctggatt
5221 agaacaaatt ttgtgcaagc accaaatgga gagttcacag tgtcacccag aaactctcct
5281 ggagaaattt tactaaacct agagttgggc cctgatctga acccttattt ggctcatttg
5341 tcaaggatgt ataatggata tgctggtgga gttgaagtcc aggttctcct ggcagggaac
5401 gcgttcactg ccgggaagat cctcttcgcc gctgtcccgc caaattttcc ggtggaattc
5461 ttaagcccag cccagattac aatgctccca catataatag tagatgttag gactcttgaa
5521 ccaattatga tcccattacc tgatgttagg aatacattct tccactataa taatcagccc
5581 aacagccgca tgagattagt ggctatgctc tacacccccc ttagatctaa tggctcaggt
5641 gatgatgttt tcactgtttc ttgcagggtt ttgactaggc ctacccctga ttttgagttc
5701 acttatctag tgccaccctc tgttgaatct aagactaaac ccttttcttt acccattcta
5761 accctttctg agctcacaaa ttcgaggttc ccggtcccca tcgattcgct tttcaccgcc
5821 caaaataatg ttttgcaggt gcagtgtcaa aatggcaggt gcacacttga cggtgagcta
5881 caaggcacaa cccagttgct cccatctggc atctgtgcgt tcagggggcg ggtgacagca
5941 gaaactgaca atcctgacaa gtggcacatg caactgcaaa accttaatgg cacaacatat
6001 gacccaactg atgatgtgcc agccccactg ggtacacctg acttcaaggg cgtcgtgttt
6061 gggatggcaa gccaaagaaa tgtgggtaac gacgcgcctg gctcaaccag gtcccatgag
6121 gcggtgattt caacctacag ccccagattt gttcctaaat taggctctgt caatttcaaa
6181 agcaatgatg atgatttcca attgcagcca acaagattca caccagtggg cattaatgat
6241 gatggcaacc aaccattcag acaatgggaa ctaccagatt attcaggagt gcttaccttg
6301 aatatgaacc ttgccccccc tgttgctcca aatttccctg gcgaacaatt actattcttc
6361 agatcttctg tgccatgttc aggaggttac aaccaaggta ttatagattg ccttatcccc
6421 caagaatgga tccaacactt ctaccaggaa tcagcacctt ctcagtcaga agtggcccta
6481 atcaggtacg tcaaccccga cacgggtcgt acactgtttg aggcaaaatt gcataggtca
6541 ggctatatca ctgtggctca ttctggagac tatcctcttg ttgttccggc taatggatac
6601 tttagatttg actcttgggt aaatcagttt tactcactcg ccccaatggg aactgggaat
6661 gggcgaagga gggctcagta atggctggag ctttcattgc aggattggcg ggtgacatgc
6721 tcacgtcatc cgtgggctcc ctggtgaacg caggggcaaa cgccatcaac caaaagatag
6781 actttgaaaa caacaaacaa ctccagtctg cttcctttca acatgataaa gagatgctcc
6841 aagcgcaggt gaacgcaacc aagcagctgc aatctgagat gatagcccta aaacaggggg
6901 ttttggccgc aggcggcttt tcccccactg atgcagcgag gggggccatc ggtgcaccca
6961 tgacaaaggt gcttgactgg tctggcactc gatactgggc tcccaattcc acaaagacaa
7021 ctggttattc ggggcaattc acctcttcac ctgtgcacat gcccagcccg agtgtcccac
7081 aatcaaaacc cgcaaagccc aagtctctag gttcttcttc ttcttctagt agtgtttaca
7141 gtatgtctac ccaattaact tctctaacat ctggctcttc tagtaatgct tcttctgctt
7201 ctacaaaatt gacaaatttg agctccggct cttctcaaaa cagaacagca gagtgggtga
7261 accaacagag aagtctcagc cctttcatga gtggcgcact caatatctcg catgtcacgc
7321 caccttcaag tagggcctcc agttctggga cggtctcaac cgtgcccaag gaagttttgg
7381 actcctggac atctgcattc aacacacaca gacagccgct cttcgcacac ctcagagtga
7441 ggggggagtc acgtgtttag tgaaaagaaa taattggcta taatatga
//