Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234776 | GII.17 | |
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| GII.P17 |
ORF1: 1..5091
ORF2: 5072..6694
ORF3: 6694..7473
LOCUS PZ234776 7534 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20240684 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234776
VERSION PZ234776.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7534)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7534)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7534
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20240684"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="30-May-2024"
/note="genotype: GII.17[P17]"
gene <1..5091
/gene="ORF1"
CDS <1..5091
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YDR55806.1"
/translation="DASDAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPP
GETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDAQN
TAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAK
IEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKK
VASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKR
DFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGL
LHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNVKTLDEL
KQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSAR
IRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKP
RDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGT
EIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLF
ITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVV
SILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGPGN
APKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGE
SFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM
IRCARAFGGLMNELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYG
LKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGRLDQNSILRQLYWTRGPNHE
DPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..981
/gene="ORF1"
/product="p48"
mat_peptide 982..2079
/gene="ORF1"
/product="NTPase"
mat_peptide 2080..2616
/gene="ORF1"
/product="p22"
mat_peptide 2617..3015
/gene="ORF1"
/product="VPg"
mat_peptide 3016..3558
/gene="ORF1"
/product="Pro"
mat_peptide 3559..5088
/gene="ORF1"
/product="RdRp"
gene 5072..6694
/gene="ORF2"
CDS 5072..6694
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55807.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6694..7473
/gene="ORF3"
CDS 6694..7473
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55808.1"
/translation="MAGAFIAGLAGDLLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMFSPNAPQSKPAKPRSPVPSSSPSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gacgcttccg atgccgttgc tggcaaaaac aacaacaacg acaaggaaaa atcttcaagt
61 gacagcttgt ttgctaacat gtctgtcact tttaagaaag ccctcggggc gcggtctaaa
121 caaccgcccc cgggagaaac aaaacaaata caaaaaccac caaggccacc gacaccggaa
181 ttggtgaaga gaatacctcc acccccaccc aatggcgagg atgaaccagg gatagtgtac
241 aaggtgggag agggtgtgtc tgggctgccc gacctaacaa ctgtggcaca acctgacgca
301 caaaacacag cttacagtgt tcccccactt agccagagag aagtcggcga agctaaagaa
361 ccgctgcctg gctccattct ggaaatgtgg gatggtgaga tctaccacta tgggctgtat
421 gttgagcggg ggcatgtgct cggagtacac aaaccacctg ctgcaataag ccttgccaaa
481 attgaaataa caccgctgtc tctctactgg agagtggtct acactcccca gtatttgata
541 gatccaggaa ctcttaagaa cttgagtgga gagactttcc catacacggc ctttgataat
601 aactgctatg ccttctgttg ctgggtccta gacctcaacg actcctggct tagcaggagg
661 atgatccaaa gaacaactgg atttttcaaa ccttatcagg attggaacag aaaaccctta
721 ccaaccatgg atgaaccgaa aatcaagaag gccgcgaatg ctgtcctatg tgctctctcc
781 tcactcttca ctagacccat taaggacatc attgggaagc ttagaccact gaacattctt
841 aatatactgg caacctgcga ttggactttt gcaggcatag tggaatcctt gatccttctt
901 gctgaactct ttggggtgtt ctggacaccc ccagatgtgt ctgcgatgat tgctccctta
961 ctcggcgact acgagatgca aggccccgaa gacctggctg tggaacttgt acccgtggtg
1021 atgggaggaa taggtttggt gttaggattc accaaagaaa agatcggcaa gatgctttca
1081 tcagctgcga ccacacttag ggcctgcaag gatttgggat cttatggatt ggagatactc
1141 aaattggtca tgaagtggtt cttccccaaa aaggaggagg ctaacgaact agccatggtg
1201 agggccattg aggatgcagt cctggatttg gaggcaatag aaaacaatca catgaccacc
1261 cttctcaagg ataaagacag cctggccaca tacatgagga ctcttgactt ggaagaagag
1321 aaagcaagga aactgtcgac caaatcggcg tcacctgaca tcgtgggtac aataaatgca
1381 ctgctggcta ggatagcagc cgccagatca ctggtccaca aggctaagga ggagctctcg
1441 agcagacaga gacctgttgt tgtaatgata tcaggtagac caggtatagg aaagacccat
1501 ctggccagag agctagccaa gaaagttgcg tcaacactgt caggcgacca aagaatcgga
1561 ctggtaccta ggaatggtgt cgaccattgg gacgcctaca agggagaaag ggtggtcctg
1621 tgggatgatt atggtatgag caaccctata caggacgcac tgaggctcca agaattggct
1681 gacacctgtc ctctgaccct aaattgtgat aggattgaaa acaaaggaaa agtgttcgac
1741 agtgacgcca taattataac aaccaacctt gcaaacccag caccactaga ctatgtcaac
1801 tttgaggcct gctctagacg catagacttc ttggtgtatg cagacgcacc tgacattgag
1861 aaggctaagc gtgacttccc tggccaacca gatatgtgga aagaccactt cagaccagac
1921 ttctcacaca ttaaactcca gctggcacca cagggaggtt ttgacaaaaa tggcaacacc
1981 ccacatggca aaggtgtggt aaagtccctg acgattggtt ccctgatcgc cagggcctcc
2041 ggcttgctcc acgagagaat ggatgagttc gagctccaag gctctgacct gccaaccttc
2101 aattttgacc gcaataaagt cgctgccttc agacaattgg cagctgaaaa caaatatggt
2161 cttatggaca cattgagggt cggcaaccaa ctgaaaaatg ttaagaccct ggatgagctg
2221 aagcaggcca taaagaacat cagtatcaag aagtgtcaaa tagtgtataa tggatgcacc
2281 tataccatgg aatctgatgg gaggggcaag gttgtggttg aaaaggtaca aaacgcaaca
2341 gttcaaacca acaatgaact cgtaggggca ctccaccacc tgaggtctgc aaggataaga
2401 tactatgtta aatgtttcca agaagccatt tactctctac tccaaattgc tggcgcagcc
2461 tttgtcacct cacgcatcgt gaggcgcatg aacatatcaa acctctggtc gaagccaccc
2521 attgaggagg gtgatgagcc tgaggacaga ggagggtgcc ccaagcccag ggatgaagat
2581 gatctcacta ttgattctag agacattaaa gtggaaggga agaagggcaa gaacaagtct
2641 ggccggggca agaaacacac agccttctct tccaagggcc tcagtgatga agagtacgat
2701 gagtacaaga gaatcagaga ggagaggaat ggcaaatact caatagagga atacctccaa
2761 gacagggaca ggtactatga agagcttgcc attgctaagg ccactgagga agacttctgt
2821 gaagaggagg agatcaaaat ccgccagaga atcttccgac ccaccaggaa gcaacggaaa
2881 gaggaaaggg ccacgctcgg gcttgtcaca ggaacggaaa tcagaaagag gaatccagat
2941 gattttaaac caaaaggaaa attgtgggct gatgacaaca ggagcgtgga ttacaatgag
3001 aggatagatt ttgaggctcc cccgagtgtt tggtctagga tagtcaactt tggcacaggc
3061 tggggattct gggtctctcc aagtctcttt ataacttcaa cacacgtcat accaaaagga
3121 atcactgagg cctttggagt gcccataaac caaatccaaa tccacaaatc tggagaattt
3181 tgccgcttgc ggtttccaaa gccaattaga ccagacgtga gtgggatgat cttggaagag
3241 ggcgcccctg aaggcactgt tgtgtctatt ctcatcaaaa ggacaacagg ggagctgatg
3301 cctcttgcag tcagaatggg gactcatgcc acaatgaaaa tccaaggtag aacggtgggt
3361 ggtcagatgg gtatgcttct cactggctca aatgctaaag gcatggatct aggcacaacg
3421 ccaggtgact gcggatgtcc ttacatatac aaaaggggca atgaccttgt ggttattggg
3481 gtgcacactg cagcagctcg tggaggcaac acggtcatat gtgccacaca gggaagtgag
3541 ggtgaagcca ctcttgaagg agatgacaac aagggtacct attgtggagc ccccattttg
3601 ggacctggca atgcaccaaa gttgagcaca aagacaaaat tctggagatc ctctaacgca
3661 ccgcttcccc caggtactta tgaaccagca taccttggtg ggagggaccc gcgcgtgaag
3721 ggaggcccat ctctgcaaca agttatgaga gatcaactca aaccttttac agagcccaga
3781 gggaagccac caaacccaaa tgtcttagag tcagcaaaga agactatcat caatgttctg
3841 gaacagacca ttgaccctcc tcaaaagtgg tcatatgccc aagcttgtgc atccctcgac
3901 aagacaacct ccagtggata cccgcaccac gttcggaaga atgactactg gagtggtgaa
3961 tccttcacag gaaaacttgc agaccaggct tcaaaagcaa atctcatgta tgaggagggc
4021 aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa aactgacaaa
4081 atttatggca aaatcaagaa aagactccta tggggctctg acctctccac aatgattcga
4141 tgcgccagag catttggtgg tctcatgaat gaactcaaag caaattgtat tacactccct
4201 atcagagttg gtatgaatat gaatgaagat ggtcccataa tatttgagaa acactccagg
4261 tacaggtacc actatgatgc tgattactcc cgctgggact ccacacaaca gcgggcagtg
4321 ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagct ggcacaaata
4381 gtggcagagg acctgctgtc accaagtgtg gttgatgtgg gcgatttcaa aatcgctatc
4441 aatgaaggcc taccatctgg cgtgccttgc acctcacaat ggaattctat tgcccactgg
4501 ttacttactt tgtgtgccct ttctgaagtg acgggattag gtcctgacat cattcaagct
4561 aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat aaaattggac
4621 ccagagaaat taaccgcaaa gctcaaagaa tatggcctta aacccactcg gcccgacaaa
4681 actgaagggc cgttggtgat tagtgaggac ctgaatgggt taactttcct tcgccggaca
4741 gtcacccgtg atccagcagg ttggtttgga aggttggacc aaaactccat cctcaggcag
4801 ttgtactgga caagaggacc caaccatgaa gaccccagtg agaccatgat accacacgca
4861 caaagacctg tgcagctcat ggcactacta ggagagtcct ctctacatgg accctcattt
4921 tacagcaagg ttagcaagtt agttatatct gaacttaaag agggaggaat ggatttttat
4981 gtgcccagac aagaatcaat gttcagatgg atgaggttct cagatctaag cacatgggag
5041 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc
5101 atctaatgat ggtgctgctg gtctcgtacc agagggcaac aacgagaccc ttcccctaga
5161 accagttgcg ggcgcagcta tagccgcacc cgtcactggc caaaataata taattgaccc
5221 ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt cacccagaaa
5281 ctctcctgga gaaattttat taaatttaga gttgggccct gatttgaacc cttatttggc
5341 tcatttgtca aggatgtaca atgggtatgc tggtggagtg gaagttcagg ttctcctggc
5401 agggaacgcg ttcactgccg gaaagatcct cttcgccgcc gtcccgccaa atttcccagt
5461 ggaattctta agcccagccc agatcacaat gctcccacac ttaatagtag atgtcaggac
5521 tcttgaacca atcatgatcc cactccctga tgttaggaac acattcttcc attataataa
5581 tcagcctaac agccgcatga gattagtggc tatgctctac accccactca gatctaatgg
5641 ttcaggtgat gatgtcttta ctgtctcttg tagggttttg actaggccta ctcctgattt
5701 tgagttcact tatttagtgc caccttctgt tgaatctaaa accaagcctt tttccctacc
5761 tattttaacc ctttctgagc tcacaaattc gaggtttcca gtccccatcg attcgctttt
5821 taccgcccag aataatgtgt tgcaggtgca gtgtcaaaat ggcaggtgca cacttgatgg
5881 tgagctacaa ggcacaaccc agttgctccc aaccggcatc tgtgcattca gaggacgggt
5941 gacagcacaa atcaaccaac gtgacaggtg gcacatgcaa ctgcaaaacc tcaatggcac
6001 aacatatgac ccaactgatg atgtgccagc cccgctgggt acacctgact tcaagggcgt
6061 cgtgtttgga atggtaagtc aaagaaatgt gggtagtgat gcgcctggct caaccagagc
6121 ccaacaggcg tgggtttcaa cctatagccc ccaatttgtc cccaaattag gttctgtcaa
6181 tcttagaatt agtaataatg atgacttcca attccagcca acaaaattca caccagtggg
6241 catcaatgat gatgatgatg atcacccgtt cagacagtgg gagctaccaa attattcagg
6301 ggagcttacc ttgaacatga atcttgcccc cccagttgct ccaaatttcc ctggtgaaca
6361 attgttattc ttcagatctt tcgtgccatg ctcaggaggc tacaaccaag gtattataga
6421 ttgtcttatt ccccaagaat ggatccaaca tttctatcag gaatcagcac cctcccagtc
6481 agacgtggcc ctaatcaggt atgtcaaccc cgatacggga cgtacactgt ttgaagcaaa
6541 attgcacaga tctggttaca ttactgtggc tcactctgga gattatcctc ttgttgttcc
6601 ggctaatgga cactttagat ttgattcttg ggtaaatcag ttttactcac tcgccccaat
6661 gggaactggg aatgggcgaa ggagggctca gtaatggctg gggctttcat tgcaggattg
6721 gcaggcgact tgctcacgtc atctgtgggc tcccttgtga acgcaggggc aaacgccatc
6781 aaccaaaagg tagactttga aaacaataaa caactccagt ctgcttcctt tcagcatgat
6841 aaagagatgc tccaagcgca ggtgagggca accaagcagc tgcaatctga aatgatagcc
6901 ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc aaggggatcc
6961 attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg ggcgcccaat
7021 tccacaaaga caactggcta ttcgggacaa ttcacctcct cacctgtgca tatgtttagc
7081 ccaaatgctc cacaatcaaa acctgcaaag cctaggtctc cagttccttc ctcctctcct
7141 agtagtgttt atagtatgta tactcaatct actcatttga catctggctc ttctagtaat
7201 gcttcttctg cctctacaaa gttgacaaat ttaagctctg gctcctctca aaacagaaca
7261 gcagagtggg tgaatcaaca gagaagtctt agccctttca tgagtggcgc acttaacatc
7321 tcacatgtta cgccaccctc aagtagggct tccagttctg ggacggtctc aaccgtgccc
7381 aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc gctcttcgca
7441 cacctcaggg tgagggggga gtcacgtgtt tagtgaaaag aaataattgg ctataatgtg
7501 atttctttct aaatttggct aatttgtatc tttt
//