Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234774 | GII.17 | |
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| GII.P17 |
ORF1: 1..5085
ORF2: 5066..6688
ORF3: 6688..7467
LOCUS PZ234774 7528 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20240507 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234774
VERSION PZ234774.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7528)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7528)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7528
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20240507"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="25-Apr-2024"
/note="genotype: GII.17[P17]"
gene <1..5085
/gene="ORF1"
CDS <1..5085
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YDR55800.1"
/translation="SDAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGE
TKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDAQNTA
YSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIE
ITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRR
MIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLN
ILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVEL
VPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEA
NELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASP
DIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVA
STLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLN
CDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDF
PGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLH
ERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNVKTLDELKQ
AIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIR
YYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRD
EDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGTEI
RKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFIT
STHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSI
LIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDCGCPY
IYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGPGNAP
KLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
NPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESF
TGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIR
CARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQR
AVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLK
PTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGRLDQNSILRQLYWTRGPNHEDP
SETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..975
/gene="ORF1"
/product="p48"
mat_peptide 976..2073
/gene="ORF1"
/product="NTPase"
mat_peptide 2074..2610
/gene="ORF1"
/product="p22"
mat_peptide 2611..3009
/gene="ORF1"
/product="VPg"
mat_peptide 3010..3552
/gene="ORF1"
/product="Pro"
mat_peptide 3553..5082
/gene="ORF1"
/product="RdRp"
gene 5066..6688
/gene="ORF2"
CDS 5066..6688
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55801.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6688..7467
/gene="ORF3"
CDS 6688..7467
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55802.1"
/translation="MAGAFIAGLAGDLLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMFSPNAPQSKPAKPRSPVPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tccgatgccg ttgctggcaa aaacaacaac aacgacaagg aaaaatcttc aagtgacagc
61 ttgtttgcta atatgtctgt cacttttaag aaagccctcg gggcgcggtc taaacaaccg
121 cccccgggag aaacaaaaca aatacaaaaa ccaccaaggc caccgacacc ggaattggtg
181 aagagaatac ctccaccccc acccaatggc gaggatgaac cagggatagt gtacaaggtg
241 ggagagggtg tgtctgggct gcccgaccta acaactgtgg cacaacctga cgcacaaaac
301 acagcttaca gtgttccccc acttagccag agagaagtcg gcgaagctaa agaaccgctg
361 cctggctcca ttctggaaat gtgggatggt gagatctacc actatgggct gtatgttgag
421 cgggggcatg tgctcggagt acacaaacca cctgctgcaa taagccttgc caaaattgaa
481 ataacaccgc tgtctctcta ctggagagtg gtctacactc cccagtattt gatagatcca
541 ggaactctta agaacttgag tggagagact ttcccataca cggcctttga taataactgc
601 tatgccttct gttgctgggt cctagacctc aacgactcct ggcttagcag gaggatgatc
661 caaagaacaa ctggattttt caaaccttat caggattgga acagaaaacc cttaccaacc
721 atggatgaac cgaaaatcaa gaaggccgcg aatgctgtcc tatgtgctct ctcctcactc
781 ttcactagac ccattaagga catcattggg aagcttagac cactgaacat tcttaatata
841 ctggcaacct gcgattggac ttttgcaggc atagtggaat ccttgatcct tcttgctgaa
901 ctctttgggg tgttctggac acccccagat gtgtctgcga tgattgctcc cttactcggc
961 gactacgaga tgcaaggccc cgaagacctg gctgtggaac ttgtacccgt ggtgatggga
1021 ggaataggtt tggtgttagg attcaccaaa gaaaagatcg gcaagatgct ttcatcagct
1081 gcgaccacac ttagggcctg caaggatttg ggatcttatg gattggagat actcaaattg
1141 gtcatgaagt ggttcttccc caaaaaggag gaggctaacg aactagccat ggtgagggcc
1201 attgaggatg cagtcctgga tttggaggca atagaaaaca atcacatgac cacccttctc
1261 aaggataaag acagcctggc cacatacatg aggactcttg acttggaaga agagaaagca
1321 aggaaactgt cgaccaaatc ggcgtcacct gacatcgtgg gtacaataaa tgcactgctg
1381 gctaggatag cagccgccag atcactggtc cacaaggcta aggaggagct ctcgagcaga
1441 cagagacctg ttgttgtaat gatatcaggt agaccaggta taggaaagac ccatctggcc
1501 agagagctag ccaagaaagt tgcgtcaaca ctgtcaggcg accaaagaat cggactggta
1561 cctaggaatg gtgtcgacca ttgggacgcc tacaagggag aaagggtggt cctgtgggat
1621 gattatggta tgagcaaccc tatacaggac gcactgaggc tccaagaatt ggctgacacc
1681 tgtcctctga ccctaaattg tgataggatt gaaaacaaag gaaaagtgtt cgacagtgac
1741 gccataatta taacaaccaa ccttgcaaac ccagcaccac tagactatgt caactttgag
1801 gcctgctcta gacgcataga cttcttggtg tatgcagacg cacctgacat tgagaaggct
1861 aagcgtgact tccctggcca accagatatg tggaaagacc acttcagacc agacttctca
1921 cacattaaac tccagctggc accacaggga ggttttgaca aaaatggcaa caccccacat
1981 ggcaaaggtg tggtaaagtc cctgacgatt ggttccctga tcgccagggc ctccggcttg
2041 ctccacgaga gaatggatga gttcgagctc caaggctctg acctgccaac cttcaatttt
2101 gaccgcaata aagtcgctgc cttcagacaa ttggcagctg aaaacaaata tggtcttatg
2161 gacacattga gggtcggcaa ccaactgaaa aatgttaaga ccctggatga gctgaagcag
2221 gccataaaga acatcagtat caagaagtgt caaatagtgt ataatggatg cacctatacc
2281 atggaatctg atgggagggg caaggttgtg gttgaaaagg tacaaaacgc aacagttcaa
2341 accaacaatg aactcgtagg ggcactccac cacctgaggt ctgcaaggat aagatactat
2401 gttaaatgtt tccaagaagc catttactct ctactccaaa ttgctggcgc agcctttgtc
2461 acctcacgca tcgtgaggcg catgaacata tcaaacctct ggtcgaagcc acccattgag
2521 gagggtgatg agcctgagga cagaggaggg tgccccaagc ccagggatga agatgatctc
2581 actattgatt ctagagacat taaagtggaa gggaagaagg gcaagaacaa gtctggccgg
2641 ggcaagaaac acacagcctt ctcttccaag ggcctcagtg atgaagagta cgatgagtac
2701 aagagaatca gagaggagag gaatggcaaa tactcaatag aggaatacct ccaagacagg
2761 gacaggtact atgaagagct tgccattgct aaggccactg aggaagactt ctgtgaagag
2821 gaggagatca aaatccgcca gagaatcttc cgacccacca ggaagcaacg gaaagaggaa
2881 agggccacgc tcgggcttgt cacaggaacg gaaatcagaa agaggaatcc agatgatttt
2941 aaaccaaaag gaaaattgtg ggctgatgac aacaggagcg tggattacaa tgagaggata
3001 gattttgagg ctcccccgag tgtttggtct aggatagtca actttggcac aggctgggga
3061 ttctgggtct ctccaagtct ctttataact tcaacacacg tcataccaaa aggaatcact
3121 gaggcctttg gagtgcccat aaaccaaatc caaatccaca aatctggaga attttgccgc
3181 ttgcggtttc caaagccaat tagaccagac gtgagtggga tgatcttgga agagggcgcc
3241 cctgaaggca ctgttgtgtc tattctcatc aaaaggacaa caggggagct gatgcctctt
3301 gcagtcagaa tggggactca tgccacaatg aaaatccaag gtagaacggt gggtggtcag
3361 atgggtatgc ttctcactgg ctcaaatgct aaaggcatgg atctaggcac aacgccaggt
3421 gactgcggat gtccttacat atacaaaagg ggcaatgacc ttgtggttat tggggtgcac
3481 actgcagcag ctcgtggagg caacacggtc atatgtgcca cacagggaag tgagggtgaa
3541 gccactcttg aaggagatga caacaagggt acctattgtg gagcccccat tttgggacct
3601 ggcaatgcac caaagttgag cacaaagaca aaattctgga gatcctctaa cgcaccgctt
3661 cccccaggta cttatgaacc agcatacctt ggtgggaggg acccgcgcgt gaagggaggc
3721 ccatctctgc aacaagttat gagagatcaa ctcaaacctt ttacagagcc cagagggaag
3781 ccaccaaacc caaatgtctt agagtcagca aagaagacta tcatcaatgt tctggaacag
3841 accattgacc ctcctcaaaa gtggtcatat gcccaagctt gtgcatccct cgacaagaca
3901 acctccagtg gatacccgca ccacgttcgg aagaatgact actggagtgg tgaatccttc
3961 acaggaaaac ttgcagacca ggcttcaaaa gcaaatctca tgtatgagga gggcaagcac
4021 atgcaaccag tttacaccgc agcactcaaa gacgagctcg tgaaaactga caaaatttat
4081 ggcaaaatca agaaaagact cctatggggc tctgacctct ccacaatgat tcgatgcgcc
4141 agagcatttg gtggtctcat ggatgaactc aaagcaaatt gtattacact ccctatcaga
4201 gttggtatga atatgaatga agatggtccc ataatatttg agaaacactc caggtacagg
4261 taccactatg atgctgatta ctcccgctgg gactccacac aacagcgggc agtgctggaa
4321 gcggcacttg aaatcatggt gagattttct gctgagccac agctggcaca aatagtggca
4381 gaggacctgc tgtcaccaag tgtggttgat gtgggcgatt tcaaaatcgc tatcaatgaa
4441 ggcctaccat ctggcgtgcc ttgcacctca caatggaatt ctattgccca ctggttactt
4501 actttgtgtg ccctttctga agtgacggga ttaggtcctg acatcattca agctaactcc
4561 atgtactctt tctatggtga tgatgagatt gtgagcacag acataaaatt ggacccagag
4621 aaattaaccg caaagctcaa agaatatggc cttaaaccca ctcggcccga caaaactgaa
4681 gggccgttgg tgattagtga ggacctgaat gggttaactt tccttcgccg gacagtcacc
4741 cgtgatccag caggttggtt tggaaggttg gaccaaaact ccatcctcag gcagttgtac
4801 tggacaagag gacccaacca tgaagacccc agtgagacca tgataccaca cgcacaaaga
4861 cctgtgcagc tcatggcact actaggagag tcctctctac atggaccctc attttacagc
4921 aaggttagca agttagttat atctgaactt aaagagggag gaatggattt ttatgtgccc
4981 agacaagaat caatgttcag atggatgagg ttctcagatc taagcacatg ggagggcgat
5041 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa
5101 tgatggtgct gctggtctcg taccagaggg caacaacgag acccttcccc tagaaccagt
5161 tgcgggcgca gctatagccg cacccgtcac tggccaaaat aatataattg acccctggat
5221 tagaacaaat tttgtgcaag caccaaatgg agagttcaca gtgtcaccca gaaactctcc
5281 tggagaaatt ttattaaatt tagagttggg ccctgatttg aacccttatt tggctcattt
5341 gtcaaggatg tacaatgggt atgctggtgg agtggaagtt caggttctcc tggcagggaa
5401 cgcgttcact gccggaaaga tcctcttcgc cgccgtcccg ccaaatttcc cagtggaatt
5461 cttaagccca gcccagatca caatgctccc acacttaata gtagatgtca ggactcttga
5521 accaatcatg atcccactcc ctgatgttag gaacacattc ttccattata ataatcagcc
5581 taacagccgc atgagattag tggctatgct ctacacccca ctcagatcta atggttcagg
5641 tgatgatgtc tttactgtct cttgtagggt tttgactagg cctactcctg attttgagtt
5701 cacttattta gtgccacctt ctgttgaatc taaaaccaag cctttttccc tacctatttt
5761 aaccctttct gagctcacaa attcgaggtt tccagtcccc atcgattcgc tttttaccgc
5821 ccagaataat gtgttgcagg tgcagtgtca aaatggcagg tgtacacttg atggtgagct
5881 acaaggcaca acccagttgc tcccaaccgg catctgtgca ttcagaggac gggtgacagc
5941 acaaatcaac caacgtgaca ggtggcacat gcaactgcaa aacctcaatg gcacaacata
6001 tgacccaact gatgatgtgc cagccccgct gggtacacct gacttcaagg gcgtcgtgtt
6061 tggaatggta agtcaaagaa atgtgggtag tgatgcgcct ggctcaacca gagcccaaca
6121 ggcgtgggtt tcaacctata gcccccaatt tgtccccaaa ttaggttctg tcaatcttag
6181 aattagtaat aatgatgact tccaattcca gccaacaaaa ttcacaccag tgggcatcaa
6241 tgatgatgat gatgatcacc cgttcagaca gtgggagcta ccaaattatt caggggagct
6301 taccttgaac atgaatcttg cccccccagt tgctccaaat ttccctggtg aacaattgtt
6361 attcttcaga tctttcgtgc catgctcagg aggctacaac caaggtatta tagattgtct
6421 tattccccaa gaatggatcc aacatttcta tcaggaatca gcaccctccc agtcagacgt
6481 ggccctaatc aggtatgtca accccgatac gggacgtaca ctgtttgaag caaaattgca
6541 cagatctggt tacattactg tggctcactc tggagattat cctcttgttg ttccggctaa
6601 tggacacttt agatttgatt cttgggtaaa tcagttttac tcactcgccc caatgggaac
6661 tgggaatggg cgaaggaggg ctcagtaatg gctggggctt tcattgcagg attggcaggc
6721 gacttgctca cgtcatctgt gggctccctt gtgaacgcag gggcaaacgc catcaaccaa
6781 aaggtagact ttgaaaacaa taaacaactc cagtctgctt cctttcagca tgataaagag
6841 atgctccaag cgcaggtgag ggcaaccaag cagctgcaat ctgaaatgat agccctaaaa
6901 cagggggttt tggccgcagg cggcttttcc cccactgatg cagcaagggg atccattggt
6961 gcacccatga caaaggtgct tgactggtct ggcactcgat actgggcgcc caattccaca
7021 aagacaactg gctattcggg acaattcacc tcctcacctg tgcatatgtt tagcccaaat
7081 gctccacaat caaaacctgc aaagcctagg tctccagttc cttcctcctc ttctagtagt
7141 gtttatagta tgtatactca atctactcat ttgacatctg gctcttctag taatgcttct
7201 tctgcctcta caaagttgac aaatttaagc tctggctcct ctcaaaacag aacagcagag
7261 tgggtgaatc aacagagaag tcttagccct ttcatgagtg gcgcacttaa catctcacat
7321 gttacgccac cctcaagtag ggcttccagt tctgggacgg tctcaaccgt gcccaaggaa
7381 gttttggact cctggacgtc tgcgtttaac acacacagac agccgctctt cgcacacctc
7441 agggtgaggg gggagtcacg tgtttagtga aaagaaataa ttggctataa tgtgatttct
7501 ttctaaattt ggctaatttg tatctttt
//