Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234773 | GII.17 | |
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| GII.P17 |
ORF1: 1..5094
ORF2: 5075..6697
ORF3: 6697..7476
LOCUS PZ234773 7537 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20240448 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234773
VERSION PZ234773.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7537)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7537)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7537
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20240448"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="12-Apr-2024"
/note="genotype: GII.17[P17]"
gene <1..5094
/gene="ORF1"
CDS <1..5094
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YDR55797.1"
/translation="NDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARPKQPP
PGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDAQ
NTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLA
KIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIVGKLR
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAK
KVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAK
RDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASG
LLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLVDTLRVGNQLKSVKTLDE
LKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSA
RIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPK
PRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
TEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSL
FITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTV
VSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGPG
NAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSG
ESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLST
MIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNH
EDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..984
/gene="ORF1"
/product="p48"
mat_peptide 985..2082
/gene="ORF1"
/product="NTPase"
mat_peptide 2083..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3018
/gene="ORF1"
/product="VPg"
mat_peptide 3019..3561
/gene="ORF1"
/product="Pro"
mat_peptide 3562..5091
/gene="ORF1"
/product="RdRp"
gene 5075..6697
/gene="ORF2"
CDS 5075..6697
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55798.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6697..7476
/gene="ORF3"
CDS 6697..7476
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55799.1"
/translation="MAGAFIAGLAGDLLTSSVGSLVNAGANAINQRVDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPADAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSPVPSSSSSSVYSMYTQST
HLTPGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 aacgacgctt ccgctgccgt tgctggcaaa aacaacaaca acgacaagga aaaatcttca
61 agtgacagct tgtttgctaa tatgtctgtc actttcaaga aagccctcgg ggcgcggcct
121 aaacaaccgc ccccgggaga aacaaaacaa atacaaaaac caccaaggcc accgacaccg
181 gaattggtga agagaatacc tccaccccca cccaatggcg aggatgaacc agggatagtg
241 tacaaggtgg gagagggtgt gtctgggctg cccgacctaa caactgtggc acaacctgac
301 gcacaaaaca cagcttacag tgttccccca cttagccaga gagaagtcgg cgaagctaaa
361 gaaccgctgc ctggctccat tctggaaatg tgggatggtg agatctacca ctatgggctg
421 tatgttgagc gggggcatgt gctcggagta cacaaaccac ctgctgcaat aagccttgcc
481 aaaattgaaa taacaccgct gtctctctac tggagagtgg tctacactcc ccagtatttg
541 atagatccag gaactcttaa gaacttgagt ggagagactt tcccatacac ggcctttgac
601 aataactgct atgccttctg ttgttgggtc ctagacctca acgactcctg gcttagcagg
661 agaatgatcc aaagaacaac tggatttttc aaaccttatc aggattggaa cagaaaaccc
721 ttaccaacca tggatgaacc gaaaatcaag aaggccgcga atgctgtcct atgcgctctc
781 tcctcactct tcactagacc cattaaggac atcgttggga agcttagacc actgaacatt
841 cttaatatac tggcaacctg cgattggact tttgcaggca tagtggaatc cttgatcctt
901 cttgctgaac tctttggggt gttctggaca cccccagatg tgtctgcgat gattgctccc
961 ttactcggtg actacgagat gcaaggcccc gaagacctgg ctgtggaact tgtaccagtg
1021 gtgatgggag gaataggttt ggtgttagga ttcaccaaag aaaagatcgg caagatgctt
1081 tcatcagctg cgaccacact tagggcctgc aaggatttag gatcttatgg attggagata
1141 ctcaaattgg tcatgaaatg gttcttcccc aaaaaggagg aggctaacga actagccatg
1201 gtgagggcca ttgaggatgc agtcctggat ttggaggcaa tagaaaacaa tcacatgact
1261 acccttctca aggataaaga cagcctggcc acatacatga ggactcttga cttggaagaa
1321 gagaaagcaa ggaaactgtc gaccaaatcg gcgtcacctg acatcgtggg tacaataaac
1381 gcactgctgg ctaggatagc agccgccaga tcactggtcc acaaggctaa ggaggagctc
1441 tcgagcagac agagacctgt tgttgtaatg atatcaggta gaccaggtat aggaaagacc
1501 catctggcca gagagctagc caagaaagtc gcgtcaacac tgtcaggcga ccaaagaatc
1561 ggactggtac ctaggaatgg tgtcgaccat tgggacgcct acaagggaga aagggtggtc
1621 ctgtgggatg attatggtat gagcaaccct atacaggacg cactgaggct ccaagaattg
1681 gctgacacct gtcctctgac cctaaattgt gataggattg aaaacaaagg aaaagtgttc
1741 gacagtgacg ccataattat aacaaccaac cttgcaaacc cagcaccact agactatgtc
1801 aactttgagg cctgctctag acgcatagac ttcttggtgt atgcagacgc acctgacatt
1861 gagaaggcta agcgtgactt ccctggccaa ccagatatgt ggaaagacca tttcagacca
1921 gacttctcac acattaaact tcagctggca ccacagggag gttttgacaa aaatggcaac
1981 accccacatg gcaaaggtgt ggtaaagtcc ctgacgattg gttccctgat cgccagggcc
2041 tccggcttgc tccacgagag aatggatgag ttcgagctcc aaggctctga cctgccaacc
2101 ttcaattttg accgcaataa ggtcgctgcc ttcagacaat tggcagctga aaacaaatat
2161 ggtcttgtgg acacattaag ggtcggcaac caactgaaaa gtgttaagac cctggatgag
2221 ctgaagcagg ccataaagaa catcagtatc aagaagtgtc aaatagtgta taatggatgc
2281 acctatacta tggaatctga tgggaggggc aaggttgtgg ttgaaaaggt acaaaacgca
2341 acagttcaaa ccaacaatga acttgtaggg gcactccacc acctgagatc tgcaaggata
2401 agatactatg ttaaatgttt tcaagaagcc atttactctc tactccaaat tgctggcgca
2461 gcctttgtca cctcacgcat tgtgaggcgc atgaacatat caaacctctg gtcgaagcca
2521 cccattgagg agggtgatga gcctgaagac agaggaggat gccccaagcc cagggatgaa
2581 gatgacctca ctattgactc tagagacatt aaagtggaag ggaagaaggg caagaacaag
2641 tctggccgag gcaagaaaca cacagccttc tcttccaagg gcctcagtga tgaagagtac
2701 gatgagtaca agagaatcag agaggagagg aatggcaaat actcgataga ggaatacctc
2761 caagacaggg acaggtacta tgaagagctt gccattgcta aggccactga ggaagacttc
2821 tgtgaagagg aggagatcaa aatccgccag agaatcttcc gacccaccag gaagcaacgg
2881 aaagaggaaa gggccacgct cgggcttgtc acaggaacgg aaatcagaaa gaggaatcca
2941 gatgatttta aaccaaaagg aaaattgtgg gctgatgaca acaggagcgt ggattacaat
3001 gagaggatag attttgaggc tcccccgagt gtttggtcta ggatagtcaa ctttggcaca
3061 ggctggggat tctgggtctc tccaagtctc tttataactt caacacacgt cataccaaaa
3121 ggaatcactg aggcctttgg agtgcccata aaccaaatcc aaatccacaa atctggagaa
3181 ttttgccgct tgcggtttcc aaagccaatt agaccagacg tgagtgggat gatcttggaa
3241 gagggcgccc ctgaaggcac tgttgtgtct attctcatca aaaggacaac aggggagctg
3301 atgcctcttg cagtcagaat ggggactcat gccacaatga aaatccaagg tagaacggtg
3361 ggtggtcaga tgggtatgct tctcactggc tcaaatgcta aaggcatgga tctaggcaca
3421 acgccaggtg actgcggatg tccatacata tacaaaaggg gcaatgacct tgtggtcatt
3481 ggggtgcaca ctgcagcagc tcgtggaggc aacacggtca tatgtgccac acagggaagt
3541 gagggtgaag ccactcttga aggagatgac aacaagggta cctattgtgg agcccccatt
3601 ttgggacctg gcaatgcacc aaaactgagc acaaagacaa aattctggag atcctctaac
3661 gcaccgcttc ccccaggtac ttatgaacca gcataccttg gtgggaggga cccgcgcgtg
3721 aagggaggcc catccctgca acaagttatg agagatcaac tcaaaccttt tacagagccc
3781 agagggaagc caccaaaccc aaatgtctta gagtcagcaa agaagactat catcaatgtt
3841 ctggaacaga ccattgaccc tcctcaaaag tggtcatatg cccaagcttg tgcatccctc
3901 gacaagacaa cctccagtgg atacccgcac cacgttcgga agaatgacta ctggagtggt
3961 gaatccttca caggaaaact tgcagatcag gcttcaaaag caaatctcat gtatgaggaa
4021 ggcaagcaca tgcaaccagt ttacaccgca gcactcaaag acgagctcgt gaaaactgac
4081 aaaatttatg gcaaaatcaa gaaaagactc ctatggggct ctgacctctc cacaatgatt
4141 cgatgcgcca gagcatttgg tggtctcatg gatgaactca aagcaaattg tattacactc
4201 cctatcagag ttggtatgaa tatgaatgaa gatggtccca taatatttga gaaacactcc
4261 aggtacaggt accactatga tgctgattac tcccgctggg actccacaca acagcgggca
4321 gtgctggaag cggcacttga aatcatggtg agattttctg ctgagccaca gctggcacaa
4381 atagtggcag aggacctgct gtcaccaagt gtggttgatg tgggcgattt caaaatcgct
4441 atcaatgaag gcctaccatc tggcgtgcct tgcacctcac aatggaattc tattgcccac
4501 tggttgctta ccttgtgtgc cctttctgaa gtgacgggat taggtcctga catcattcaa
4561 gctaactcca tgtactcttt ctatggtgat gatgagattg tgagcacaga cataaaattg
4621 gacccagaga aattaaccgc aaagctcaaa gaatatggcc ttaaacccac tcggcccgac
4681 aaaactgagg ggccgttggt gattagtgag gacctgaatg ggttaacttt ccttcgccgg
4741 acagtcaccc gtgatccagc aggttggttt ggaaagttgg accaaaactc catcctcagg
4801 cagttgtact ggacaagagg acccaaccat gaagacccca gtgagaccat gataccacac
4861 gcacaaagac ctgtgcagct catggcacta ctaggagagt cctctctaca tggaccctca
4921 ttttacagca aggttagcaa gttagtcata tctgaactta aagagggagg aatggatttt
4981 tatgtgccca gacaagaatc aatgttcaga tggatgaggt tctcagatct aagcacatgg
5041 gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatctaat gatggtgctg ctggtctcgt accagagggc aacaacgaga cccttcccct
5161 agaaccagtt gcgggcgcag ctatagccgc acccgtcact ggccaaaata atataattga
5221 cccctggatt agaacaaatt ttgtgcaagc accaaatgga gagttcacag tgtcacccag
5281 aaactctcct ggagaaattt tattaaattt agagttgggc cctgatttga acccttattt
5341 ggctcatttg tcaaggatgt acaatgggta tgctggtgga gtggaagttc aggttctcct
5401 ggcagggaac gcgttcactg ccggaaagat cctcttcgcc gccgtcccgc caaatttccc
5461 agtggaattc ttaagcccag cccagatcac aatgctccca cacttaatag tagatgttag
5521 gactcttgaa ccaatcatga tcccactccc tgatgttagg aatacattct tccattataa
5581 taatcagcct aacagccgca tgagattggt ggctatgctc tacaccccac tcagatctaa
5641 tggttcaggt gatgacgtct ttactgtctc ttgtagggtt ttgactaggc ctactcctga
5701 ttttgagttc acttatttag tgccaccttc tgttgaatct aaaactaagc ctttttccct
5761 acctatttta accctttctg agctcacaaa ttcgaggttt ccagtcccca tcgattcgct
5821 ttttaccgcc cagaataatg tgttgcaggt gcagtgtcaa aatggcaggt gtacacttga
5881 tggtgagtta caaggcacaa cccagttgct cccaactggc atctgtgcat tcagaggacg
5941 ggtgacagca caaatcaacc aacgtgatag gtggcacatg caactgcaaa acctcaatgg
6001 tacaacatat gacccaactg atgatgtgcc agccccgctg ggtacacctg acttcaaggg
6061 cgtcgtgttt ggaatggtaa gccaaagaaa tgtgggtagt gatgcgcctg gctcaaccag
6121 agcccaacag gcgtgggttt caacctatag cccccaattt gtccccaaat taggttctgt
6181 caatcttaga attagtaata atgatgactt ccaattccag ccaacaaaat tcacaccagt
6241 gggcatcaat gatgatgatg atgatcaccc gttcagacag tgggagctac caaattattc
6301 aggggagctt accttgaaca tgaatcttgc ccccccagtt gctccaaatt ttcctggtga
6361 acaattgttg tttttcagat ctttcgtgcc atgctcagga ggttacaacc aaggtattat
6421 agattgtctt attccccaag aatggatcca acatttctat caggaatcag caccctccca
6481 gtcagacgtg gccctaatca ggtatgtcaa ccccgatacg ggacgtacac tgtttgaagc
6541 aaaattgcat agatctggtt acattactgt ggctcactct ggagattatc ctcttgttgt
6601 tccggctaat ggacacttta gatttgattc ttgggtaaat cagttttact cactcgcccc
6661 aatgggaact gggaatgggc gaaggagggc tcagtaatgg ctggggcttt cattgcagga
6721 ttggcaggcg acttgctcac gtcatctgtg ggctcccttg tgaacgcagg ggcaaacgcc
6781 atcaaccaaa gggtagactt tgaaaacaat aaacaactcc agtctgcttc ctttcagcat
6841 gataaagaga tgctccaagc gcaggtgagg gcaaccaagc agctgcaatc tgaaatgata
6901 gccctaaaac agggggtttt ggccgcaggc ggcttttccc ccgctgatgc agcaagggga
6961 tccattggtg cacccatgac aaaggtgctt gactggtctg gcactcggta ctgggcgccc
7021 aattccacaa agacaactgg ctattcggga caattcacct cttcacctgt gcatatgtct
7081 agcccaaatg ctccacaatc aaaacctgca aagcctaggt ctccagttcc ttcctcctct
7141 tctagtagtg tttatagtat gtatactcaa tctactcatt tgacacctgg ctcttctagt
7201 aatgcttctt ctgcctctac aaagttgaca aatttaagct ctggctcctc tcaaaacaga
7261 acggcagagt gggtgaatca acagagaagt cttagccctt tcatgagtgg cgcacttaac
7321 atctcacatg ttacgccacc ctcaagtagg gcttccagtt ctgggacggt ctcaaccgtg
7381 cccaaggaag ttttggactc ctggacgtct gcgtttaaca cacacagaca gccgctcttc
7441 gcacacctca gggtgagggg ggagtcacgt gtttagtgaa aagaaataat tggctataat
7501 gtgatttctt tctaaatttg gctaatttgt atctttt
//