Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234771 | GII.17 | |
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| GII.P17 |
ORF1: 1..5104
ORF2: 5085..6707
ORF3: 6707..7486
LOCUS PZ234771 7492 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20240396 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234771
VERSION PZ234771.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7492)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7492)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7492
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20240396"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="07-Apr-2024"
/note="genotype: GII.17[P17]"
gene <1..5104
/gene="ORF1"
CDS <1..5104
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="YDR55791.1"
/translation="MASNDASDAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSK
QPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQP
DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
SLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG
KLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
LAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
KAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNVKT
LDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHL
RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGG
CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
VTGTEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
PSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPG
DCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPIL
GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGRLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RdRp"
gene 5085..6707
/gene="ORF2"
CDS 5085..6707
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55792.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6707..7486
/gene="ORF3"
CDS 6707..7486
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55793.1"
/translation="MAGAFIAGLAGDLLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMFSPNAPQSKPAKPRSPVPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gatggcgtct aacgacgctt ccgatgccgt tgctggcaaa aacaacaaca acgacaagga
61 aaaatcttca agtgacagct tgtttgctaa tatgtctgtc acttttaaga aagccctcgg
121 ggcgcggtct aaacaaccgc ccccgggaga aacaaaacaa atacaaaaac caccaaggcc
181 accgacaccg gaattggtga agagaatacc tccaccccca cccaatggcg aggatgaacc
241 agggatagtg tacaaggtgg gagagggtgt gtctgggctg cccgacctaa caactgtggc
301 acaacctgac gcacaaaaca cagcttacag tgttccccca cttagccaga gagaagtcgg
361 cgaagctaaa gaaccgctgc ctggctccat tctggaaatg tgggatggtg agatctacca
421 ctatgggctg tatgttgagc gggggcatgt gctcggagta cacaaaccac ctgctgcaat
481 aagccttgcc aaaattgaaa taacaccgct gtctctctac tggagagtgg tctacactcc
541 ccagtatttg atagatccag gaactcttaa gaacttgagt ggagagactt tcccatacac
601 ggcctttgat aataactgct atgccttctg ttgctgggtc ctagacctca acgactcctg
661 gcttagcagg aggatgatcc aaagaacaac tggatttttc aaaccttatc aggattggaa
721 cagaaaaccc ttaccaacca tggatgaacc gaaaatcaag aaggccgcga atgctgtcct
781 atgtgctctc tcctcactct tcactagacc cattaaggac atcattggga agcttagacc
841 actgaacatt cttaatatac tggcaacctg cgattggact tttgcaggca tagtggaatc
901 cttgatcctt cttgctgaac tctttggggt gttctggaca cccccagatg tgtctgcgat
961 gattgctccc ttactcggcg actacgagat gcaaggcccc gaagacctgg ctgtggaact
1021 tgtacccgtg gtgatgggag gaataggttt ggtgttagga ttcaccaaag aaaagatcgg
1081 caagatgctt tcatcagctg cgaccacact tagggcctgc aaggatttgg gatcttatgg
1141 attggagata ctcaaattgg tcatgaagtg gttcttcccc aaaaaggagg aggctaacga
1201 actagccatg gtgagggcca ttgaggatgc agtcctggat ttggaggcaa tagaaaacaa
1261 tcacatgacc acccttctca aggataaaga cagcctggcc acatacatga ggactcttga
1321 cttggaagaa gagaaagcaa ggaaactgtc gaccaaatcg gcgtcacctg acatcgtggg
1381 tacaataaat gcactgctgg ctaggatagc agccgccaga tcactggtcc acaaggctaa
1441 ggaggagctc tcgagcagac agagacctgt tgttgtaatg atatcaggta gaccaggtat
1501 aggaaagacc catctggcca gagagctagc caagaaagtt gcgtcaacac tgtcaggcga
1561 ccaaagaatc ggactggtac ctaggaatgg tgtcgaccat tgggacgcct acaagggaga
1621 aagggtggtc ctgtgggatg attatggtat gagcaaccct atacaggacg cactgaggct
1681 ccaagaattg gctgacacct gtcctctgac cctaaattgt gataggattg aaaacaaagg
1741 aaaagtgttc gacagtgacg ccataattat aacaaccaac cttgcaaacc cagcaccact
1801 agactatgtc aactttgagg cctgctctag acgcatagac ttcttggtgt atgcagacgc
1861 acctgacatt gagaaggcta agcgtgactt ccctggccaa ccagatatgt ggaaagacca
1921 cttcagacca gacttctcac acattaaact ccagctggca ccacagggag gttttgacaa
1981 aaatggcaac accccacatg gcaaaggtgt ggtaaagtcc ctgacgattg gttccctgat
2041 cgccagggcc tccggcttgc tccacgagag aatggatgag ttcgagctcc aaggctctga
2101 cctgccaacc ttcaattttg accgcaataa agtcgctgcc ttcagacaat tggcagctga
2161 aaacaaatat ggtcttatgg acacattgag ggtcggcaac caactgaaaa atgttaagac
2221 cctggatgag ctgaagcagg ccataaagaa catcagtatc aagaagtgtc aaatagtgta
2281 taatggatgc acctatacca tggaatctga tgggaggggc aaggttgtgg ttgaaaaggt
2341 acaaaacgca acagttcaaa ccaacaatga actcgtaggg gcactccacc acctgaggtc
2401 tgcaaggata agatactatg ttaaatgttt ccaagaagcc atttactctc tactccaaat
2461 tgctggcgca gcctttgtca cctcacgcat cgtgaggcgc atgaacatat caaacctctg
2521 gtcgaagcca cccattgagg agggtgatga gcctgaggac agaggagggt gccccaagcc
2581 cagggatgaa gatgatctca ctattgattc tagagacatt aaagtggaag ggaagaaggg
2641 caagaacaag tctggccggg gcaagaaaca cacagccttc tcttccaagg gcctcagtga
2701 tgaagagtac gatgagtaca agagaatcag agaggagagg aatggcaaat actcaataga
2761 ggaatacctc caagacaggg acaggtacta tgaagagctt gccattgcta aggccactga
2821 ggaagacttc tgtgaagagg aggagatcaa aatccgccag agaatcttcc gacccaccag
2881 gaagcaacgg aaagaggaaa gggccacgct cgggcttgtc acaggaacgg aaatcagaaa
2941 gaggaatcca gatgatttta aaccaaaagg aaaattgtgg gctgatgaca acaggagcgt
3001 ggattacaat gagaggatag attttgaggc tcccccgagt gtttggtcta ggatagtcaa
3061 ctttggcaca ggctggggat tctgggtctc tccaagtctc tttataactt caacacacgt
3121 cataccaaaa ggaatcactg aggcctttgg agtgcccata aaccaaatcc aaatccacaa
3181 atctggagaa ttttgccgct tgcggtttcc aaagccaatt agaccagacg tgagtgggat
3241 gatcttggaa gagggcgccc ctgaaggcac tgttgtgtct attctcatca aaaggacaac
3301 aggggagctg atgcctcttg cagtcagaat ggggactcat gccacaatga aaatccaagg
3361 tagaacggtg ggtggtcaga tgggtatgct tctcactggc tcaaatgcta aaggcatgga
3421 tctaggcaca acgccaggtg actgcggatg tccttacata tacaaaaggg gcaatgacct
3481 tgtggttatt ggggtgcaca ctgcagcagc tcgtggaggc aacacggtca tatgtgccac
3541 acagggaagt gagggtgaag ccactcttga aggagatgac aacaagggta cctattgtgg
3601 agcccccatt ttgggacctg gcaatgcacc aaagttgagc acaaagacaa aattctggag
3661 atcctctaac gcaccgcttc ccccaggtac ttatgaacca gcataccttg gtgggaggga
3721 cccgcgcgtg aagggaggcc catctctgca acaagttatg agagatcaac tcaaaccttt
3781 tacagagccc agagggaagc caccaaaccc aaatgtctta gagtcagcaa agaagactat
3841 catcaatgtt ctggaacaga ccattgaccc tcctcaaaag tggtcatatg cccaagcttg
3901 tgcatccctc gacaagacaa cctccagtgg atacccgcac cacgttcgga agaatgacta
3961 ctggagtggt gaatccttca caggaaaact tgcagaccag gcttcaaaag caaatctcat
4021 gtatgaggag ggcaagcaca tgcaaccagt ttacaccgca gcactcaaag acgagctcgt
4081 gaaaactgac aaaatttatg gcaaaatcaa gaaaagactc ctatggggct ctgacctctc
4141 cacaatgatt cgatgcgcca gagcatttgg tggtctcatg gatgaactca aagcaaattg
4201 tattacactc cctatcagag ttggtatgaa tatgaatgaa gatggtccca taatatttga
4261 gaaacactcc aggtacaggt accactatga tgctgattac tcccgctggg actccacaca
4321 acagcgggca gtgctggaag cggcacttga aatcatggtg agattttctg ctgagccaca
4381 gctggcacaa atagtggcag aggacctgct gtcaccaagt gtggttgatg tgggcgattt
4441 caaaatcgct atcaatgaag gcctaccatc tggcgtgcct tgcacctcac aatggaattc
4501 tattgcccac tggttactta ctttgtgtgc cctttctgaa gtgacgggat taggtcctga
4561 catcattcaa gctaactcca tgtactcttt ctatggtgat gatgagattg tgagcacaga
4621 cataaaattg gacccagaga aattaaccgc aaagctcaaa gaatatggcc ttaaacccac
4681 tcggcccgac aaaactgaag ggccgttggt gattagtgag gacctgaatg ggttaacttt
4741 ccttcgccgg acagtcaccc gtgatccagc aggttggttt ggaaggttgg accaaaactc
4801 catcctcagg cagttgtact ggacaagagg acccaaccat gaagacccca gtgagaccat
4861 gataccacac gcacaaagac ctgtgcagct catggcacta ctaggagagt cctctctaca
4921 tggaccctca ttttacagca aggttagcaa gttagttata tctgaactta aagagggagg
4981 aatggatttt tatgtgccca gacaagaatc aatgttcaga tggatgaggt tctcagatct
5041 aagcacatgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctaat gatggtgctg ctggtctcgt accagagggc aacaacgaga
5161 cccttcccct agaaccagtt gcgggcgcag ctatagccgc acccgtcact ggccaaaata
5221 atataattga cccctggatt agaacaaatt ttgtgcaagc accaaatgga gagttcacag
5281 tgtcacccag aaactctcct ggagaaattt tattaaattt agagttgggc cctgatttga
5341 acccttattt ggctcatttg tcaaggatgt acaatgggta tgctggtgga gtggaagttc
5401 aggttctcct ggcagggaac gcgttcactg ccggaaagat cctcttcgcc gccgtcccgc
5461 caaatttccc agtggaattc ttaagcccag cccagatcac aatgctccca cacttaatag
5521 tagatgtcag gactcttgaa ccaatcatga tcccactccc tgatgttagg aacacattct
5581 tccattataa taatcagcct aacagccgca tgagattagt ggctatgctc tacaccccac
5641 tcagatctaa tggttcaggt gatgatgtct ttactgtctc ttgtagggtt ttgactaggc
5701 ctactcctga ttttgagttc acttatttag tgccaccttc tgttgaatct aaaaccaagc
5761 ctttttccct acctatttta accctttctg agctcacaaa ttcgaggttt ccagtcccca
5821 tcgattcgct ttttaccgcc cagaataatg tgttgcaggt gcagtgtcaa aatggcaggt
5881 gtacacttga tggtgagcta caaggcacaa cccagttgct cccaaccggc atctgtgcat
5941 tcagaggacg ggtgacagca caaatcaacc aacgtgacag gtggcacatg caactgcaaa
6001 acctcaatgg cacaacatat gacccaactg atgatgtgcc agccccgctg ggtacacctg
6061 acttcaaggg cgtcgtgttt ggaatggtaa gtcaaagaaa tgtgggtagt gatgcgcctg
6121 gctcaaccag agcccaacag gcgtgggttt caacctatag cccccaattt gtccccaaat
6181 taggttctgt caatcttaga attagtaata atgatgactt ccaattccag ccaacaaaat
6241 tcacaccagt gggcatcaat gatgatgatg atgatcaccc gttcagacag tgggagctac
6301 caaattattc aggggagctt accttgaaca tgaatcttgc ccccccagtt gctccaaatt
6361 tccctggtga acaattgtta ttcttcagat ctttcgtgcc atgctcagga ggctacaacc
6421 aaggtattat agattgtctt attccccaag aatggatcca acatttctat caggaatcag
6481 caccctccca gtcagacgtg gccctaatca ggtatgtcaa ccccgatacg ggacgtacac
6541 tgtttgaagc aaaattgcac agatctggtt acattactgt ggctcactct ggagattatc
6601 ctcttgttgt tccggctaat ggacacttta gatttgattc ttgggtaaat cagttttact
6661 cactcgcccc aatgggaact gggaatgggc gaaggagggc tcagtaatgg ctggggcttt
6721 cattgcagga ttggcaggcg acttgctcac gtcatctgtg ggctcccttg tgaacgcagg
6781 ggcaaacgcc atcaaccaaa aggtagactt tgaaaacaat aaacaactcc agtctgcttc
6841 ctttcagcat gataaagaga tgctccaagc gcaggtgagg gcaaccaagc agctgcaatc
6901 tgaaatgata gccctaaaac agggggtttt ggccgcaggc ggcttttccc ccactgatgc
6961 agcaagggga tccattggtg cacccatgac aaaggtgctt gactggtctg gcactcgata
7021 ctgggcgccc aattccacaa agacaactgg ctattcggga caattcacct cctcacctgt
7081 gcatatgttt agcccaaatg ctccacaatc aaaacctgca aagcctaggt ctccagttcc
7141 ttcctcctct tctagtagtg tttatagtat gtatactcaa tctactcatt tgacatctgg
7201 ctcttctagt aatgcttctt ctgcctctac aaagttgaca aatttaagct ctggctcctc
7261 tcaaaacaga acagcagagt gggtgaatca acagagaagt cttagccctt tcatgagtgg
7321 cgcacttaac atctcacatg ttacgccacc ctcaagtagg gcttccagtt ctgggacggt
7381 ctcaaccgtg cccaaggaag ttttggactc ctggacgtct gcgtttaaca cacacagaca
7441 gccgctcttc gcacacctca gggtgagggg ggagtcacgt gtttagtgaa aa
//