Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234768 | GII.17 | |
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| GII.P17 |
ORF1: 1..5091
ORF2: 5072..6694
ORF3: 6694..7470
LOCUS PZ234768 7476 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20240233 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234768
VERSION PZ234768.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7476)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7476)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7476
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20240233"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="06-Mar-2024"
/note="genotype: GII.17[P17]"
gene <1..5091
/gene="ORF1"
CDS <1..5091
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YDR55782.1"
/translation="DASDAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPP
GETKQILKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDAQN
TAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAK
IEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKK
VASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKR
DFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGL
LHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDEL
KQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSAR
IRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKP
RDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGT
EIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLF
ITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVV
SILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGPGN
APKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGE
SFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM
IRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYG
LKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHE
DPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..981
/gene="ORF1"
/product="p48"
mat_peptide 982..2079
/gene="ORF1"
/product="NTPase"
mat_peptide 2080..2616
/gene="ORF1"
/product="p22"
mat_peptide 2617..3015
/gene="ORF1"
/product="VPg"
mat_peptide 3016..3558
/gene="ORF1"
/product="Pro"
mat_peptide 3559..5088
/gene="ORF1"
/product="RdRp"
gene 5072..6694
/gene="ORF2"
CDS 5072..6694
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55783.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6694..7470
/gene="ORF3"
CDS 6694..7470
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55784.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST
HLTSGSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSRA
SSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gacgcttccg atgccgttgc tggcaaaaac aacaacaacg acaaggaaaa atcttcaagt
61 gacagcttgt ttgctaatat gtctgtcact tttaagaaag ccctcggggc gcggtctaaa
121 caaccgcccc cgggagaaac aaaacaaata ctaaaaccac caaggccacc gacaccggaa
181 ttggtgaaga gaatacctcc acccccaccc aatggcgagg atgaaccagg gatagtgtac
241 aaggtgggag agggtgtgtc tgggctgccc gacctaacaa ctgtggcaca acctgacgca
301 caaaacacag cttacagtgt tcccccactt agccagagag aagtcggcga agctaaagaa
361 ccgctgcctg gctccattct ggaaatgtgg gatggtgaga tctaccacta tgggctgtat
421 gttgagcggg ggcatgtgct cggagtacac aaaccacctg ctgcaataag ccttgccaaa
481 attgaaataa caccgctgtc tctctactgg agagtggtct acactcccca gtatttgata
541 gatccaggaa ctcttaagaa cttgagtgga gagactttcc catacacggc ctttgataac
601 aactgctatg ccttctgttg ttgggtccta gacctcaacg actcctggct tagcaggaga
661 atgattcaaa gaacaactgg atttttcaaa ccttatcagg attggaacag aaaaccctta
721 ccaaccatgg atgaaccgaa aatcaagaag gccgcgaatg ctgtcctatg tgctctctcc
781 tcactcttca ctagacccat taaggacatc attgggaagc ttagaccact gaacattctt
841 aatatactgg caacctgcga ttggactttt gcaggcatag tggaatcctt gatccttctt
901 gctgaactct ttggggtgtt ctggacaccc ccagatgtgt ctgcgatgat tgctccctta
961 ctcggcgact acgagatgca aggccccgaa gacctggctg tggaacttgt acccgtggtg
1021 atgggaggaa taggtttggt gttaggattc accaaagaaa agatcggcaa gatgctttca
1081 tcagctgcga ccacacttag ggcctgcaag gatttaggat cttatggatt ggagatactc
1141 aaattggtca tgaagtggtt cttccccaag aaggaggagg ctaacgaact agccatggta
1201 agggccattg aggatgcagt cctggatttg gaggcaatag aaaacaatca tatgaccacc
1261 cttctcaagg ataaagacag cctggccaca tacatgagga ctcttgactt ggaagaagag
1321 aaagcaagga aactgtcaac caaatcggcg tcacctgaca tcgtgggtac aataaacgca
1381 ctgttggcta ggatagcagc cgccaggtca ctggtccaca aggctaagga ggagctctcg
1441 agcagacaga gacctgttgt tgtaatgata tcaggtagac caggtatagg aaagacccat
1501 ctggccagag agctagccaa gaaagttgcg tcaacactgt caggcgacca aaggattgga
1561 ctggtgccta ggaatggcgt cgaccattgg gacgcctaca agggagaaag ggtggtcctg
1621 tgggatgatt atggtatgag caaccctata caggacgcac tgaggctcca agaattggct
1681 gacacctgtc ctctgaccct aaattgtgat aggattgaaa acaaaggaaa agtgttcgac
1741 agtgacgcca taattataac aaccaacctt gcaaacccag caccactaga ctatgtcaac
1801 tttgaggcct gctctagacg catagacttc ttggtgtatg cagacgcacc tgacattgag
1861 aaggctaagc gtgacttccc tggccaacca gatatgtgga aagaccattt cagaccagac
1921 ttctcacaca ttaaacttca gctggcacca cagggaggtt ttgacaaaaa tggcaacacc
1981 ccacatggca aaggtgtggt aaagtccctg acgattggtt ccctgatcgc cagggcctcc
2041 ggcttgctcc acgagagaat ggatgagttc gagctccaag gctctgacct gccaaccttc
2101 aattttgacc gcaataaagt cgccgccttc agacaattgg cagctgaaaa caaatatggt
2161 cttatggaca cattgagggt cggcaaccaa ctgaaaagtg ttaagaccct ggatgagctg
2221 aagcaggcca taaagaacat cagtatcaag aagtgtcaaa tagtgtataa tggatgcacc
2281 tataccatgg aatctgatgg gaggggcaag gttgtggttg aaaaggtaca aaacgcaaca
2341 gttcaaacca acaatgaact cgtaggggca ctccaccacc tgaggtctgc aaggataaga
2401 tactatgtta aatgtttcca agaagccatt tactctctac tccaaattgc tggcgcagcc
2461 tttgtcacct cacgcatcgt gaggcgcatg aacatatcaa acctctggtc gaagccaccc
2521 attgaggagg gtgatgagcc tgaggacaga ggagggtgcc ccaagcccag ggatgaagat
2581 gatctcacta ttgattctag agacattaaa gtggaaggga agaagggcaa gaacaagtct
2641 ggccggggca agaaacacac agccttctct tccaagggcc tcagtgatga agagtacgat
2701 gagtacaaga gaatcagaga ggagaggaat ggcaaatact caatagagga atacctccaa
2761 gacagggaca ggtactatga agagcttgcc attgctaagg ccactgagga agacttctgt
2821 gaagaggagg agatcaaaat ccgccagaga atcttccgac ccaccaggaa gcaacggaaa
2881 gaggaaaggg ccacgctcgg gcttgtcaca ggaacggaaa tcagaaagag gaatccagat
2941 gattttaaac caaaaggaaa attgtgggct gatgacaaca ggagcgtgga ttacaatgag
3001 aggatagatt ttgaggctcc cccgagtgtt tggtctagga tagtcaactt tggcacaggc
3061 tggggattct gggtttctcc aagtctcttt ataacttcaa cacacgtcat accaaaagga
3121 atcactgagg cctttggagt gcccataaac caaatccaaa ttcacaaatc tggagaattt
3181 tgccgcttgc ggtttccaaa gccaattagg ccagacgtga gtgggatgat cttggaagag
3241 ggcgcccctg aaggcactgt tgtgtctatt ctcatcaaaa ggacaacagg ggagctgatg
3301 cctcttgcgg tcagaatggg gactcatgcc acaatgaaaa tccaaggtag aacggtgggt
3361 ggtcagatgg gtatgcttct cactggctca aatgctaaag gcatggatct aggcacaacg
3421 ccaggtgact gcggatgtcc atacatatac aaaaggggca atgaccttgt ggtcattggg
3481 gtgcacactg cagcagctcg tggaggcaac acggtcatat gtgccacaca gggaagtgag
3541 ggtgaagcca ctcttgaagg agatgacaac aagggtacct attgtggagc ccccattttg
3601 ggacctggca atgcaccaaa attgagcaca aagacaaaat tctggagatc ctctaacgca
3661 ccgcttcccc caggtactta tgaaccagca taccttggtg ggagggaccc gcgcgtgaag
3721 ggaggcccat ctctgcaaca agttatgaga gatcaactca aaccttttac agagcccaga
3781 gggaagccac caaacccaaa tgtcttagag tcagcaaaga agactatcat caatgttctg
3841 gaacagacca ttgaccctcc tcaaaagtgg tcatatgccc aagcttgtgc atccctcgac
3901 aagacaacct ccagtggata cccgcaccac gttcggaaga atgactactg gagtggtgaa
3961 tccttcacag gaaaacttgc agaccaggct tcaaaagcaa atctcatgta tgaggagggc
4021 aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa aactgacaaa
4081 atttatggca aaatcaagaa aagactccta tggggctctg acctctccac aatgattcga
4141 tgcgccagag catttggtgg tctcatggat gaactcaaag caaattgtat tacactccct
4201 atcagagttg gtatgaatat gaatgaagat ggtcccataa tatttgagaa acactccagg
4261 tacaggtacc actatgatgc tgattactcc cgctgggact ccacacaaca gcgggcagtg
4321 ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagct ggcacaaata
4381 gtggcagagg acctgctgtc accaagtgtg gttgatgtgg gcgatttcaa aatcgctatc
4441 aatgaaggcc taccatctgg cgtgccttgc acctcacaat ggaattctat tgcccactgg
4501 ttacttacct tgtgtgccct ttctgaagtg acgggattag gtcctgacat cattcaagct
4561 aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat aaaattggac
4621 ccagagaaat tgaccgcaaa gctcaaagaa tatggcctta aacccactcg gcccgacaaa
4681 actgaggggc cgttggtgat tagtgaggac ctgaatgggt tgactttcct ccgccgaaca
4741 gtcacccgtg atccagcagg ttggtttgga aagttggacc aaaactccat cctcaggcag
4801 ttgtactgga caagaggacc caaccatgaa gaccccagtg agaccatgat accacacgca
4861 caaagacctg tgcagctcat ggcactacta ggagagtcct ctctacatgg accctcattt
4921 tacagcaagg ttagcaagtt agttatatct gaacttaaag agggaggaat ggatttttat
4981 gtgcccagac aagaatcaat gttcagatgg atgaggttct cagatctaag cacatgggag
5041 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc
5101 atctaatgat ggtgctgctg gtctcgtacc agagggcaac aacgagaccc ttcccctaga
5161 accagttgcg ggcgcagcta tagccgcacc cgtcactggc caaaataata taattgaccc
5221 ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt cacccagaaa
5281 ctctcctgga gaaattttat taaatttaga gttgggccct gatttgaacc cttatttggc
5341 tcatttgtca aggatgtaca atgggtatgc tggtggagtg gaagttcagg ttctcctggc
5401 agggaacgcg ttcactgccg gaaagatcct cttcgccgcc gtcccgccaa atttcccagt
5461 ggaattctta agcccagccc agatcacaat gctcccacac ttaatagtag atgttaggac
5521 tcttgaacca atcatgatcc cactccctga tgttaggaat acattcttcc attataataa
5581 tcagcctaac agccgcatga gattagtggc tatgctctat accccactta gatctaatgg
5641 ctcaggtgat gatgtcttta ctgtctcttg cagggttttg actaggccca ctcctgattt
5701 tgagttcact tatttagtgc caccttctgt tgaatccaaa actaagcctt tttccttacc
5761 tattttaacc ctttctgagc tcacaaattc gaggtttcca gtccccatcg attcgctttt
5821 taccgcccag aataatgtgt tgcaggtgca gtgtcaaaat ggcaggtgta cacttgatgg
5881 cgagttacaa ggcacaaccc agttgctccc aactggcatc tgcgcattca gaggacgggt
5941 gacagcacaa attaaccaac gtgacaggtg gcacatgcaa ctgcaaaacc tcaatggtac
6001 aacatatgac ccaactgatg atgtgccagc cccgctgggt acacctgact tcaagggcgt
6061 cgtgtttggg atggtaagcc aaagaaatgt gggtaatgat gcgcctggct caaccagagc
6121 ccaacaggcg tggatttcaa cctatagccc ccaatttgtt cccaaattag gttctgtcaa
6181 tctcagaatt agtaataatg atgatttcca attccagccg acaaaattca caccagtggg
6241 cgtcaatgat gacgatgatg accacccgtt cagacagtgg gaactaccaa actattcagg
6301 ggagcttacc ttgaatatga atcttgcccc cccagttgct ccaaattttc ctggtgaaca
6361 attgttattc ttcagatctt tcgtgccatg ctcaggaggt tacaaccaag gtattataga
6421 ttgtcttatt ccccaagaat ggatccaaca tttctatcag gaatcagcac cctcccagtc
6481 agacgtggcc ctaatcaggt atgtcaaccc cgacacggga cgtacactgt ttgaagcaaa
6541 attgcacaga tctggctaca ttaccgtggc tcactctgga gactatcctc ttgttgttcc
6601 ggctaatgga cactttagat ttgattcttg ggtaaatcag ttttactcac tcgccccaat
6661 gggaactggg aatgggcgaa ggagggctca gtaatggctg gggctttcat tgcaggattg
6721 gcaggcgaca tgctcacgtc atctgtgggc tcccttgtga acgcaggggc aaacgccatc
6781 aaccaaaaga tagactttga aaataacaaa caactccagt ctgcttcctt tcagcatgat
6841 aaagagatgc tccaagcgca ggtgagggca accaagcagc tgcaatctga aatgatagcc
6901 ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc acggggatcc
6961 attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg ggcgcccaat
7021 tccacaaaga caactggcta ttcgggacaa ttcacctctt cacctgtgca tatgcctagc
7081 ccaaatgctc cacaatcaaa acctgcaaag cctaggtctc tagctccttc ctcttcttct
7141 agtagtatct acagtatgta cactcagtct actcatttga catctggctc ttctaatgct
7201 tcttctgcct ccacaaaatt gacaaattta agctctggct cctctcaaaa cagaacagca
7261 gagtgggtaa atcaacagag aagtcttagc cctttcatga gtggcgcact taacatctca
7321 catgtcacgc caccctcaag tagggcttcc agttctggga cggtctcaac cgtgcccaag
7381 gaagttttgg actcctggac gtctgcgttt aacacacaca gacagccgct cttcgcacac
7441 ctcagggtga ggggggagtc acgtgtttag tgaaaa
//