Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234760 | GII.17 | |
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| GII.P17 |
ORF1: 1..5077
ORF2: 5058..6680
ORF3: 6680..7459
LOCUS PZ234760 7467 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20230145 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234760
VERSION PZ234760.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7467)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7467)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7467
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20230145"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="14-Apr-2023"
/note="genotype: GII.17[P17]"
gene <1..5077
/gene="ORF1"
CDS <1..5077
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="YDR55758.1"
/translation="VAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQ
IQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDAQNTAYSV
PPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITP
LSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQ
RTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILN
ILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPV
VMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANEL
AMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIV
GTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTL
SGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQ
PDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERM
DEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIK
NISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRYYV
KCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDD
LTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKR
NPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTH
VIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIK
RTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYK
RGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGPGNAPKLS
TKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPN
VLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGK
LADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCAR
AFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVL
EAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTR
PDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSET
MIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..967
/gene="ORF1"
/product="p48"
mat_peptide 968..2065
/gene="ORF1"
/product="NTPase"
mat_peptide 2066..2602
/gene="ORF1"
/product="p22"
mat_peptide 2603..3001
/gene="ORF1"
/product="VPg"
mat_peptide 3002..3544
/gene="ORF1"
/product="Pro"
mat_peptide 3545..5074
/gene="ORF1"
/product="RdRp"
gene 5058..6680
/gene="ORF2"
CDS 5058..6680
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55759.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6680..7459
/gene="ORF3"
CDS 6680..7459
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55760.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgttgctggc aaaaacaaca acaacgacaa ggaaaaatct tcaagtgaca gcttgtttgc
61 taatatgtct gtcactttta agaaagccct cggggcgcgg tctaaacaac cgcccccggg
121 agaaacaaaa caaatacaaa aaccaccaag gccaccgaca ccggaattgg tgaagaaaat
181 acctccaccc ccacccaatg gcgaggacga accagggata gtgtacaagg tgggagaggg
241 tgtgtctggg ctgcccgacc taacaactgt ggcacaacct gacgcacaaa acacagctta
301 tagtgttccc ccacttagcc agagagaagt cggcgaagct aaagaaccgc tgcctggctc
361 cattctggaa atgtgggatg gtgagatcta ccactatggg ctgtatgttg agcgggggca
421 tgtgctcgga gtacacaaac cacctgctgc aataagcctc gccaaaattg aaataacacc
481 gttgtctctc tactggagag tggtctacac tccccagtat ttgatagatc caggaactct
541 caagaacttg agtggagaga ctttcccata cacggccttt gataacaact gttatgcctt
601 ctgttgctgg gtcctagacc tcaacgactc ctggcttagc aggagaatga tccaaagaac
661 aactggattt ttcaaacctt atcaggattg gaacagaaaa cccttaccaa ccatggatga
721 accgaaaatc aagaaggccg cgaatgctgt cttatgcgct ctctcctcac tcttcactag
781 acccattaag gacatcattg ggaagcttag accactgaac attcttaata tactggcaac
841 ctgcgattgg acttttgcag gcatagtgga atccttgatc cttcttgctg aactctttgg
901 ggtgttctgg acacccccag atgtgtctgc gatgattgct cccttactcg gtgactacga
961 gatgcagggc cccgaagacc tggccgtgga acttgtgccc gtggtgatgg gaggaatagg
1021 tttggtgtta ggattcacca aagaaaagat cggcaagatg ctttcgtcag ctgcgaccac
1081 acttagggcc tgcaaggatc taggatctta tggattggag atactcaaat tggtcatgaa
1141 gtggttcttc cccaagaagg aggaggctaa cgaactggcc atggtaaggg ccattgagga
1201 tgcagtcctg gatttggagg caatagaaaa caatcatatg accacccttc tcaaggataa
1261 agacagcctg gccacataca tgaggactct tgacttggaa gaagagaaag caaggaaact
1321 gtcaaccaaa tcggcgtcac ctgacatcgt gggtacaata aacgcattgt tggctaggat
1381 agcagccgcc aggtcactgg tccacaaggc taaggaggag ctctcgagca gacagagacc
1441 tgttgttgta atgatatcag gtagaccagg tataggaaag acccatctgg ccagagagct
1501 agccaagaaa gttgcgtcaa cactgtcagg cgaccaaagg attggactgg tgcctaggaa
1561 tggcgtcgac cattgggacg cctacaaggg agaaagggtg gtcctgtggg atgattatgg
1621 tatgagcaac cctatacaag acgcactgag gctccaagaa ttggctgaca cctgtcctct
1681 gaccctaaat tgtgatagga ttgaaaataa aggaaaagtg ttcgacagtg atgccataat
1741 tataacaacc aaccttgcaa acccagcacc actagactat gtcaactttg aggcctgctc
1801 tagacgcata gacttcttgg tgtatgcaga cgcacctgac attgagaagg ctaagcgtga
1861 tttccctggc caaccagata tgtggaaaga tcattttaga ccagacttct cacacattaa
1921 acttcagctg gcaccacagg gaggttttga caaaaatggc aacaccccac atggcaaagg
1981 tgtggtaaag tccctgacga ttggttctct gatcgccagg gcctccggct tgctccacga
2041 gagaatggat gaattcgagc tccaaggctc tgacctgcca accttcaatt ttgaccgcaa
2101 caaagtcgcc gccttcagac aattagcagc tgaaaacaaa tatggtctta tggacacatt
2161 gagggtcggc aaccaactga aaagtgttaa gaccctggat gagctgaagc aggccataaa
2221 gaacatcagt atcaagaagt gtcagatagt gtataatgga tgcacctatg ccatggaatc
2281 tgatgggagg ggcaaggttg tggttgagaa ggtacaaaac gcaacagttc aaaccaacaa
2341 tgaacttgta ggggcgctcc accacctgag atccgcaagg ataagatact atgttaaatg
2401 ttttcaagaa gccatttact ctctactcca aattgctggt gcagcctttg tcacctcacg
2461 catcgtgagg cgcatgaaca tatcaaacct ctggtcgaag ccacccatcg aggagggtga
2521 cgagcctgaa gacagaggag gatgccccaa gcccagggat gaagatgacc tcactattga
2581 ctctagagac attaaagtgg aagggaagaa gggcaagaac aagtctggcc ggggcaagaa
2641 acacacagcc ttctcttcca agggcctcag tgatgaagag tacgatgagt acaagagaat
2701 cagagaggag aggaatggca aatactcaat agaggaatac ctccaagata gggacagata
2761 ctatgaagag cttgccattg ctaaggccac tgaggaggac ttctgtgagg aggaggagat
2821 caaaatacgc cagagaatct tccgacccac caggaagcag cggaaagagg aaagggccac
2881 gcttgggctt gtcacaggat cggaaatcag aaagaggaat ccagatgact ttaaaccaaa
2941 aggaaaattg tgggctgatg acaacaggag cgtggattac aatgagagga tagattttga
3001 ggctcccccg agtgtttggt ctaggatagt caactttggc acaggctggg gattctgggt
3061 ttctccaagt ctctttataa cttcaacaca cgtcatacca aaaggaatca ctgaggcctt
3121 tggagtgccc ataaaccaaa tccaaattca caaatctgga gaattttgcc gcttgcggtt
3181 tccaaagcca attaggccag acgtgagtgg gatgatcttg gaagagggcg cccctgaagg
3241 cactgttgtg tctattctca tcaaaaggac aacaggggag ctgatgcctc ttgcagtcag
3301 aatggggact catgccacaa tgaaaatcca aggtagaacg gtgggtggtc agatgggtat
3361 gcttctcact ggctcaaatg ccaaaggcat ggatctaggc acaacgccag gtgactgcgg
3421 atgtccatac atatacaaaa ggggcaatga ccttgtggtc attggggtgc acactgcagc
3481 agctcgtgga ggcaacacgg tcatatgtgc cacacaggga agtgagggtg aagccactct
3541 tgaaggagat gacaacaagg gtacctattg tggagccccc attttgggac ctggcaatgc
3601 accaaaactg agcacaaaga caaaattctg gagatcctct aacgcaccgc ttcccccagg
3661 tacttatgaa ccagcatacc ttggtgggag agacccgcgc gtgaagggag gcccatctct
3721 gcagcaagtt atgagagatc aactcaaacc ttttacagag cccagaggga agccaccaaa
3781 cccaaatgtc ttagagtcag caaagaaaac tatcatcaat gttctggaac aaaccattga
3841 cccccctcaa aagtggtcat atgcccaagc ttgtgcatcc ctcgacaaga caacctccag
3901 tggatacccg caccacgtcc ggaagaatga ctactggagt ggtgaatcct tcacaggaaa
3961 acttgcagat caggcttcaa aagcaaatct catgtatgag gaaggcaagc acatgcaacc
4021 agtttacacc gcagcactca aagacgagct cgtgaaaact gacaaaattt atggcaaaat
4081 caagaaaaga ctcctgtggg gctccgacct ctccacaatg attcgatgcg ccagagcatt
4141 tggtggtctc atggatgaat tcaaagcaaa ttgtattaca ctccctatca gagttggtat
4201 gaatatgaat gaagatggtc ccataatatt tgagaaacac tccaggtaca ggtaccacta
4261 tgatgctgat tactcccgct gggactccac acaacagcgg gcagtgctgg aagcggcact
4321 tgaaatcatg gtgagatttt ctgctgagcc acagctggca caaatagtgg cagaggacct
4381 gctgtcacca agtgtggttg atgtgggcga tttcaaaatc gctatcaatg aaggcttacc
4441 atctggcgtg ccttgcacct cacaatggaa ttctattgcc cactggttac tcaccttgtg
4501 tgccctttct gaagtgacag gattaggtcc tgacatcata caagctaact ccatgtactc
4561 tttctatggt gatgatgaga ttgtgagcac agacataaaa ttggacccag agaaactgac
4621 cgcaaagctc aaagagtatg gccttaaacc cactcggccc gacaaaactg aggggccgtt
4681 ggtgattagt gaggacctga atgggttgac tttcctccgc cgaacagtca cccgtgatcc
4741 agcaggttgg tttggaaagt tggaccaaaa ctccatcctc aggcagttgt actggacaag
4801 aggacccaac catgaagacc ccagtgagac catgatacca cacgcacaaa gacctgtgca
4861 gctcatggca ctactaggag agtcctccct acatggaccc tcattttaca gcaaggttag
4921 caaattagta atatctgaac ttaaagaggg aggaatggat ttttatgtgc ccagacaaga
4981 gtcaatgttc agatggatga ggttctcaga tctaagcaca tgggagggcg atcgcaatct
5041 ggctcccagt tttgtgaatg aagatggcgt cgaatgacgc cgctccatct aatgatggtg
5101 ctgctggtct cgtaccagag ggcaacaacg agacccttcc cctagaacca gttgcgggcg
5161 cagctatagc cgcacccgtc actggccaaa ataatataat tgacccctgg attagaacaa
5221 attttgtgca agcaccaaat ggagagttca cagtgtcacc cagaaactct cctggagaaa
5281 ttttattaaa tttagagttg ggccctgatt tgaaccctta tttggctcat ttgtcaagga
5341 tgtacaatgg gtatgctggt ggagtggaag ttcaggttct cctggcaggg aacgcgttca
5401 ctgccggaaa gatcctcttc gccgccgtcc cgccaaattt cccagtggaa ttcttaagcc
5461 cagcccagat cacaatgctc ccacatttaa tagtagatgt taggactctt gagccaatta
5521 tgatcccact ccctgacgtt aggaatacat tcttccatta tagtaaccag cctaacagcc
5581 gcatgagatt agtggctatg ctctataccc cactcagatc taatggttca ggtgatgatg
5641 tctttactgt ctcttgcagg gttttgacta ggcctactcc tgattttgag ttcacttatt
5701 tagtgccacc ttctgttgaa tccaaaacta agcctttttc cttacctatt ttaacccttt
5761 ctgagctcac aaattcgagg tttccagtcc ccatcgattc gctttttacc gcccagaata
5821 atgtgttgca ggtgcagtgt caaaatggca ggtgtacact tgatggcgag ttacaaggca
5881 caacccagtt gctcccaact ggcatctgcg cattcagagg acgggtgaca gcacaaatta
5941 accaacgtga caggtggcac atgcaactgc aaaacctcaa tggcacaaca tatgacccaa
6001 ctgatgatgt gccagccccg ctgggtacac ctgacttcaa gggcgtcgtg tttgggatgg
6061 taagccaaag aaatgtgggt aatgatgcgc ctggctcaac cagagcccaa caggcgtgga
6121 tttcaaccta tagcccccaa tttgtcccca aattaggttc tgtcaatctc agaattagta
6181 ataatgatga tttccaattc cagccgacaa aattcacacc agtgggcgtc aatgatgacg
6241 atgatgatca cccgttcaga cagtgggaac taccaaacta ttcaggggag cttaccttga
6301 atatgaatct tgccccccca gttgctccaa attttcctgg tgaacaactg ttattcttca
6361 gatctttcgt gccatgctca ggaggttaca accaaggtat tatagattgt cttattcccc
6421 aagaatggat ccaacatttc tatcaggaat cagcaccctc ccagtcagac gtggccctaa
6481 tcaggtatgt caaccccgat acgggacgta cactgtttga agcaaaattg cacagatctg
6541 gttacattac tgtggctcac tctggagact atcctcttgt tgttccggct aatggacact
6601 ttagatttga ttcttgggta aatcagtttt actcactcgc cccaatggga actgggaatg
6661 ggcgaaggag ggctcagtaa tggctggggc tttcattgca ggattggcag gcgacatgct
6721 cacgtcatct gtgggctccc ttgtgaacgc aggggcaaac gccatcaacc aaaagataga
6781 ctttgaaaat aacaaacaac tccagtctgc ttcctttcag catgataaag agatgctcca
6841 agcgcaggtg agggcaacca agcagctgca atctgaaatg atagccctaa aacagggggt
6901 tttggccgca ggcggctttt cccccactga tgcagcacgg ggatccattg gtgcacccat
6961 gacaaaggtg cttgactggt ctggcactcg atactgggcg cccaattcca caaagacaac
7021 tggctattcg ggacaattca cctcttcacc tgtgcatatg cctagcccaa atgctccaca
7081 atcaaaacct gcaaagccta ggtctctagc tccttcctct tcttctagta gtatctacag
7141 tatgtacact cagtctactc atttgacatc tggctcttct agtaatgctt cttctgcctc
7201 cacaaaattg acaaatttaa gctctggctc ctctcaaaac agaacagcag agtgggtaaa
7261 tcaacagaga agtcttagcc ccttcatgag tggcgcactt aacatctcac atgtcacgcc
7321 accctcaagt agggcttcca gttctgggac ggtctcgacc gtgcccaagg aagttttgga
7381 ctcctggacg tctgcgttta acacacacag acagccgctc ttcgcacacc tcagagtgag
7441 gggggagtca cgtgtttagt gaaaaga
//