Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234756 | GII.17 | |
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| GII.P17 |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7466
LOCUS PZ234756 7474 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20230075 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234756
VERSION PZ234756.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7474)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7474)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7474
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20230075"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="08-Mar-2023"
/note="genotype: GII.17[P17]"
gene <1..5084
/gene="ORF1"
CDS <1..5084
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="YDR55746.1"
/translation="AAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGET
KQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDAQNTAY
SVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEI
TPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNI
LNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEAN
ELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVAS
TLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNC
DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFP
GQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHE
RMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQA
IKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRY
YVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDE
DDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR
KRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITS
THVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSIL
IKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYI
YKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGPGNAPK
LSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPN
PNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFT
GKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRC
ARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRA
VLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP
TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPS
ETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..974
/gene="ORF1"
/product="p48"
mat_peptide 975..2072
/gene="ORF1"
/product="NTPase"
mat_peptide 2073..2609
/gene="ORF1"
/product="p22"
mat_peptide 2610..3008
/gene="ORF1"
/product="VPg"
mat_peptide 3009..3551
/gene="ORF1"
/product="Pro"
mat_peptide 3552..5081
/gene="ORF1"
/product="RdRp"
gene 5065..6687
/gene="ORF2"
CDS 5065..6687
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55747.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6687..7466
/gene="ORF3"
CDS 6687..7466
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55748.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ccgctgccgt tgctggcaaa aacaacaaca acgacaagga aaaatcttca agtgacagct
61 tgtttgctaa tatgtctgtc acttttaaga aagccctcgg ggcgcggtct aaacaaccgc
121 ccccgggaga aacaaaacaa atacaaaaac caccaaggcc accgacaccg gaattggtga
181 agaaaatacc tccaccccca cccaatggcg aggacgaacc ggggatagtg tacaaggtgg
241 gagagggtgt gtctgggctg cccgacctaa caactgtggc acaacctgac gcacaaaaca
301 cagcttatag tgttccccca cttagccaga gagaagtcgg cgaagctaaa gaaccgctgc
361 ctggctccat tctggaaatg tgggatggtg agatctacca ctatgggctg tatgttgagc
421 gggggcatgt gctcggagta cacaaaccac ctgctgcaat aagcctcgcc aaaattgaaa
481 taacaccgtt gtctctctac tggagagtgg tctacactcc ccagtatttg atagatccag
541 gaactctcaa gaacttgagt ggagagactt tcccatacac ggcctttgat aacaactgtt
601 atgccttctg ttgctgggtc ctagacctca acgactcctg gcttagcagg agaatgatcc
661 aaagaacaac tggatttttc aaaccttatc aggattggaa cagaaaaccc ttaccaacca
721 tggatgaacc gaaaatcaag aaggccgcga atgctgtctt atgcgctctc tcctcactct
781 tcactagacc cattaaggac atcattggga agcttagacc actgaacatt cttaatatac
841 tggcaacctg cgattggact tttgcaggca tagtggaatc cttgatcctt cttgctgaac
901 tctttggggt gttctggaca cccccagatg tgtctgcgat gattgctccc ttactcggtg
961 actacgagat gcagggcccc gaagacctgg ccgtggaact tgtgcccgtg gtgatgggag
1021 gaataggctt ggtgttagga ttcaccaaag aaaagatcgg caagatgctt tcgtcagctg
1081 cgaccacact tagggcctgc aaggatctag gatcttatgg attggagata ctcaaattgg
1141 tcatgaagtg gttcttcccc aagaaggagg aggctaacga actagccatg gtaagggcca
1201 ttgaggatgc agtcctggat ttggaggcaa tagaaaacaa tcatatgacc acccttctca
1261 aggataaaga cagcctggcc acatacatga ggactcttga cttggaagaa gagaaagcaa
1321 ggaaactgtc aaccaaatcg gcgtcacctg acatcgtggg tacaataaac gcattgttgg
1381 ctaggatagc agccgccagg tcactggtcc acaaggctaa ggaggagctc tcgagcagac
1441 agagacctgt tgttgtaatg atatcaggta gaccaggtat aggaaagacc catctggcca
1501 gagagctagc caagaaagtt gcgtcaacac tgtcaggcga ccaaaggatt ggactggtgc
1561 ctaggaatgg cgtcgaccat tgggacgcct acaagggaga aagggtggtc ctgtgggatg
1621 attatggtat gagcaaccct atacaagacg cactgaggct ccaagaattg gctgacacct
1681 gtcctctgac cctaaattgt gataggattg aaaataaagg aaaagtgttc gacagtgatg
1741 ccataattat aacaaccaac cttgcaaacc cagcaccact agactatgtc aactttgagg
1801 cctgctctag acgcatagac ttcttggtgt atgcagacgc acctgacatt gagaaggcta
1861 agcgtgattt ccctggccaa ccagatatgt ggaaagatca ttttagacca gacttctcac
1921 acattaaact tcagctggca ccacagggag gttttgacaa aaatggcaac accccacatg
1981 gcaaaggtgt ggtaaagtcc ctgacgattg gttctctgat cgccagggcc tccggcttgc
2041 tccacgagag aatggatgaa ttcgagctcc aaggctctga cctgccaacc ttcaattttg
2101 accgcaacaa agtcgccgcc ttcagacaat tagcagctga aaacaaatat ggtcttatgg
2161 acacattgag ggtcggcaac caactgaaaa gtgttaagac cctggatgag ctgaagcagg
2221 ccataaagaa catcagtatc aagaagtgtc agatagtgta taatggatgc acctatgcca
2281 tggaatctga tgggaggggc aaggttgtgg ttgagaaggt acaaaacgca acagttcaaa
2341 ccaacaatga acttgtaggg gcgctccacc acctgagatc cgcaaggata agatactatg
2401 ttaaatgttt tcaagaagcc atttactctc tactccaaat tgctggtgca gcctttgtca
2461 cctcacgcat cgtgaggcgc atgaacatat caaacctctg gtcgaagcca cccatcgagg
2521 agggtgacga gcctgaagac agaggaggat gccccaagcc cagggatgaa gatgacctca
2581 ctattgactc tagagacatt aaagtggaag ggaagaaggg caagaacaag tctggccggg
2641 gcaagaaaca cacagccttc tcttccaagg gcctcagtga tgaagagtac gatgagtaca
2701 agagaatcag agaggagagg aatggcaaat actcaataga ggaatacctc caagataggg
2761 acagatacta tgaagagctt gccattgcta aggccactga ggaggacttc tgtgaggagg
2821 aggagatcaa aatacgccag agaatcttcc gacccaccag gaagcagcgg aaagaggaaa
2881 gggccacgct tgggcttgtc acaggatcgg aaatcagaaa gaggaatcca gatgacttta
2941 aaccaaaagg aaaattgtgg gctgatgaca acaggagcgt ggattacaat gagaggatag
3001 attttgaggc tcccccgagt gtttggtcta ggatagtcaa ctttggcaca ggctggggat
3061 tctgggtttc tccaagtctc tttataactt caacacacgt cataccaaaa ggaatcactg
3121 aggcctttgg agtgcccata aaccaaatcc aaattcacaa atctggagaa ttttgccgct
3181 tgcggtttcc aaagccaatt aggccagacg tgagtgggat gatcttggaa gagggcgccc
3241 ctgaaggcac tgttgtgtct attctcatca aaaggacaac aggggagctg atgcctcttg
3301 cagtcagaat ggggactcat gccacaatga aaatccaagg tagaacggtg ggtggtcaga
3361 tgggtatgct tctcactggc tcaaatgcca aaggcatgga tctaggcaca acgccaggtg
3421 actgcggatg tccatacata tacaaaaggg gcaatgacct tgtggtcatt ggggtgcaca
3481 ctgcagcagc tcgtggaggc aacacggtca tatgtgccac acagggaagt gagggtgaag
3541 ccactcttga aggagatgac aacaagggta cctattgtgg agcccccatt ttgggacctg
3601 gcaatgcacc aaaactgagc acaaagacaa aattctggag atcctctaac gcaccgcttc
3661 ccccaggtac ttatgaacca gcataccttg gtgggagaga cccgcgcgtg aagggaggcc
3721 catctctgca gcaagttatg agagatcaac tcaaaccttt tacagagccc agagggaagc
3781 caccaaaccc aaatgtctta gagtcagcaa agaaaactat catcaatgtt ctggaacaaa
3841 ccattgaccc ccctcaaaag tggtcatatg cccaagcttg tgcatccctc gacaagacaa
3901 cctccagtgg atacccgcac cacgtccgga agaatgacta ctggagtggt gaatccttca
3961 caggaaaact tgcagatcag gcttcaaaag caaatctcat gtatgaggaa ggcaagcaca
4021 tgcaaccagt ttacaccgca gcactcaaag acgagctcgt gaaaactgac aaaatttatg
4081 gcaaaatcaa gaaaagactc ctgtggggct ccgacctctc cacaatgatt cgatgcgcca
4141 gagcatttgg tggtctcatg gatgaattca aagcaaattg tattacactc cctatcagag
4201 ttggtatgaa tatgaatgaa gatggtccca taatatttga gaaacactcc aggtacaggt
4261 accactatga tgctgattac tcccgctggg actccacaca acagcgggca gtgctggaag
4321 cggcacttga aatcatggtg agattttctg ctgagccaca gctggcacaa atagtggcag
4381 aggacctgct gtcaccaagt gtggttgatg tgggcgattt caaaatcgct atcaatgaag
4441 gcttaccatc tggcgtgcct tgcacctcac aatggaattc tattgcccac tggttactca
4501 ccttgtgtgc cctttctgaa gtgacaggat taggtcctga catcatacaa gctaactcca
4561 tgtactcttt ctatggtgat gatgagattg tgagcacaga cataaaattg gacccagaga
4621 aattgaccgc aaagctcaaa gagtatggcc ttaaacccac tcggcccgac aaaactgagg
4681 ggccgttggt gattagtgag gacctgaatg ggttgacttt cctccgccga acagtcaccc
4741 gtgatccagc aggttggttt ggaaagttgg accaaaactc catcctcagg cagttgtact
4801 ggacaagagg acccaaccat gaagacccca gtgagaccat gataccacac gcacaaagac
4861 ctgtgcagct catggcacta ctaggagagt cctccctaca tggaccctca ttttacagca
4921 aggttagcaa attagtaata tctgaactta aagagggagg aatggatttt tatgtgccca
4981 gacaagagtc aatgttcaga tggatgaggt tctcagatct aagcacatgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccgc tccatctaat
5101 gatggtgctg ctggtctcgt accagagggc aacaacgaga cccttcccct agaaccagtt
5161 gcgggcgcag ctatagccgc acccgtcact ggccaaaata atataattga cccctggatt
5221 agaacaaatt ttgtgcaagc accaaatgga gagttcacag tgtcacccag aaactctcct
5281 ggagaaattt tattaaattt agagttgggc cctgatttga acccttattt ggctcatttg
5341 tcaaggatgt acaatgggta tgctggtgga gtggaagttc aggttctcct ggcagggaac
5401 gcgttcactg ccggaaagat cctcttcgcc gccgtcccgc caaatttccc agtggaattc
5461 ttaagcccag cccagatcac aatgctccca catttaatag tagatgttag gactcttgag
5521 ccaattatga tcccactccc tgacgttagg aatacattct tccattatag taaccagcct
5581 aacagccgca tgagattagt ggctatgctc tataccccac tcagatctaa tggttcaggt
5641 gatgatgtct ttactgtctc ttgcagggtt ttgactaggc ctactcctga ttttgagttc
5701 acttatttag tgccaccttc tgttgaatcc aaaactaagc ctttttcctt acctatttta
5761 accctttctg agctcacaaa ttcgaggttt ccagtcccca tcgattcgct ttttaccgcc
5821 cagaataatg tgttgcaggt gcagtgtcaa aatggcaggt gtacacttga tggcgagtta
5881 caaggcacaa cccagttgct cccaactggc atctgcgcat tcagaggacg ggtgacagca
5941 caaattaacc aacgtgacag gtggcacatg caactgcaaa acctcaatgg cacaacatat
6001 gacccaactg atgatgtgcc agccccgctg ggtacacctg acttcaaggg cgtcgtgttt
6061 gggatggtaa gccaaagaaa tgtgggtaat gatgcgcctg gctcaaccag agcccaacag
6121 gcgtggattt caacctatag cccccaattt gtccccaaat taggttctgt caacctcaga
6181 attagtaata atgatgattt ccaattccag ccgacaaaat tcacaccagt gggcgtcaat
6241 gatgacgatg atgaccaccc gttcagacag tgggaactac caaactattc aggggagctt
6301 accttgaata tgaatcttgc ccccccagtt gctccaaatt ttcctggtga acaactgtta
6361 ttcttcagat ctttcgtgcc atgctcagga ggttacaacc aaggtattat agattgtctt
6421 attccccaag aatggatcca acatttctat caggaatcag caccctccca gtcagacgtg
6481 gccctaatca ggtatgtcaa ccccgatacg ggacgtacac tgtttgaagc aaaattgcac
6541 agatctggtt acattactgt ggctcactct ggagactatc ctcttgttgt tccggctaat
6601 ggacacttta gatttgattc ttgggtaaat cagttttact cactcgcccc aatgggaact
6661 gggaatgggc gaaggagggc tcagtaatgg ctggggcttt cattgcagga ttggcaggcg
6721 acatgctcac gtcatctgtg ggctcccttg tgaacgcagg ggcaaacgcc atcaaccaaa
6781 agatagactt tgaaaataac aaacaactcc agtctgcttc ctttcagcat gataaagaga
6841 tgctccaagc gcaggtgagg gcaaccaagc agctgcaatc tgaaatgata gccctaaaac
6901 agggggtttt ggccgcaggc ggcttttccc ccactgatgc agcacgggga tccattggtg
6961 cacccatgac aaaggtgctt gactggtctg gcactcgata ctgggcgccc aattccacga
7021 agacaactgg ctattcggga caattcacct cttcacctgt gcatatgcct agcccaaatg
7081 ctccacaatc aaaacctgca aagcctaggt ctctagctcc ttcctcttct tctagtagta
7141 tctacagtat gtacactcag tctactcatt tgacatctgg ctcttctagt aatgcttctt
7201 ctgcctccac aaaattgaca aatttaagct ctggctcctc tcaaaacaga acagcagagt
7261 gggtaaatca acagagaagt cttagcccct tcatgagtgg cgcacttaac atctcacatg
7321 tcacgccacc ctcaagtagg gcttccagtt ctgggacggt ctcgaccgtg cccaaggaag
7381 ttttggactc ctggacgtct gcgtttaaca cacacagaca gccgctcttc gcacacctca
7441 gagtgagggg ggagtcacgt gtttagtgaa aaga
//