Typing tool
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Typing tool
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Complete norovirus genomes
| PZ234755 | GII.17 | |
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| GII.P17 |
ORF1: 1..5108
ORF2: 5089..6711
ORF3: 6711..7490
LOCUS PZ234755 7498 bp RNA linear VRL 07-APR-2026
DEFINITION Norovirus GII isolate 20230072 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PZ234755
VERSION PZ234755.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7498)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Complete Genome Analysis of Norovirus GII in Pudong New Area,
Shanghai, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7498)
AUTHORS Jiang,M., Zhou,Y., Sun,G. and Zhang,L.
TITLE Direct Submission
JOURNAL Submitted (02-APR-2026) Microbiological Testing Laboratory,
Shanghai Pudong New Area Center for Disease Control and Prevention,
Jinyang Xincun Subdistrict, Shanghai 200136, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 2025
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7498
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="20230072"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Shanghai"
/collection_date="08-Mar-2023"
/note="genotype: GII.17[P17]"
gene <1..5108
/gene="ORF1"
CDS <1..5108
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="YDR55743.1"
/translation="KMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARS
KQPPPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQ
PDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAA
ISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDII
GKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGP
EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWF
FPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKL
STKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAR
ELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELAD
TCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDI
EKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIA
RASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVK
TLDELKQAIKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALHH
LRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRG
GCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREER
NGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLG
LVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWV
SPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAP
EGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTP
GDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPI
LGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFT
EPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKND
YWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGS
DLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSR
WDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVP
CTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAK
LKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTR
GPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPR
QESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..998
/gene="ORF1"
/product="p48"
mat_peptide 999..2096
/gene="ORF1"
/product="NTPase"
mat_peptide 2097..2633
/gene="ORF1"
/product="p22"
mat_peptide 2634..3032
/gene="ORF1"
/product="VPg"
mat_peptide 3033..3575
/gene="ORF1"
/product="Pro"
mat_peptide 3576..5105
/gene="ORF1"
/product="RdRp"
gene 5089..6711
/gene="ORF2"
CDS 5089..6711
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDR55744.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6711..7490
/gene="ORF3"
CDS 6711..7490
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDR55745.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 tgaagatggc gtctaacgac gcttccgctg ccgttgctgg caaaaacaac aacaacgaca
61 aggaaaaatc ttcaagtgac agcttgtttg ctaatatgtc tgtcactttt aagaaagccc
121 tcggggcgcg gtctaaacaa ccgcccccgg gagaaacaaa acaaatacaa aaaccaccaa
181 ggccaccgac accggaattg gtgaagaaaa tacctccacc cccacccaat ggcgaggacg
241 aaccagggat agtgtacaag gtgggagagg gtgtgtctgg gctgcccgac ctaacaactg
301 tggcacaacc tgacgcacaa aacacagctt atagtgttcc cccacttagc cagagagaag
361 tcggcgaagc taaagaaccg ctgcctggct ccattctgga aatgtgggat ggtgagatct
421 accactatgg gctgtatgtt gagcgggggc atgtgctcgg agtacacaaa ccacctgctg
481 caataagcct cgccaaaatt gaaataacac cgttgtctct ctactggaga gtggtctaca
541 ctccccagta tttgatagat ccaggaactc tcaagaactt gagtggagag actttcccat
601 acacggcctt tgataacaac tgttatgcct tctgttgctg ggtcctagac ctcaacgact
661 cctggcttag caggagaatg atccaaagaa caactggatt tttcaaacct tatcaggatt
721 ggaacagaaa acccttacca accatggatg aaccgaaaat caagaaggcc gcgaatgctg
781 tcttatgcgc tctctcctca ctcttcacta gacccattaa ggacatcatt gggaagctta
841 gaccactgaa cattcttaat atactggcaa cctgcgattg gacttttgca ggcatagtgg
901 aatccttgat ccttcttgct gaactctttg gggtgttctg gacaccccca gatgtgtctg
961 cgatgattgc tcccttactc ggtgactacg agatgcaggg ccccgaagac ctggccgtgg
1021 aacttgtgcc cgtggtgatg ggaggaatag gtttggtgtt aggattcacc aaagaaaaga
1081 tcggcaagat gctttcgtca gctgcgacca cacttagggc ctgcaaggat ctaggatctt
1141 atggattgga gatactcaaa ttggtcatga agtggttctt ccccaagaag gaggaggcta
1201 acgagctagc catggtaagg gccattgagg atgcagtcct ggatttggag gcaatagaaa
1261 acaatcatat gaccaccctt ctcaaggata aagacagcct ggccacatac atgaggactc
1321 ttgacttgga agaagagaaa gcaaggaaac tgtcaaccaa atcggcgtca cctgacatcg
1381 tgggtacaat aaacgcattg ttggctagga tagcagccgc caggtcactg gtccacaagg
1441 ctaaggagga gctctcgagc agacagagac ctgttgttgt aatgatatca ggtagaccag
1501 gtataggaaa gacccatctg gccagagagc tagccaagaa agttgcgtca acactgtcag
1561 gcgaccaaag gattggactg gtgcctagga atggcgtcga ccattgggac gcctacaagg
1621 gagaaagggt ggtcctgtgg gatgattatg gtatgagcaa ccctatacaa gacgcactga
1681 ggctccaaga attggctgac acctgtcctc tgaccctaaa ttgtgatagg attgaaaata
1741 aaggaaaagt gttcgacagt gatgccataa ttataacaac caaccttgca aacccagcac
1801 cactagacta tgtcaacttt gaggcctgct ctagacgcat agacttcttg gtgtatgcag
1861 acgcacctga cattgagaag gctaagcgtg atttccctgg ccaaccagat atgtggaaag
1921 atcattttag accagacttc tcacacatta aacttcagct ggcaccacag ggaggttttg
1981 acaaaaatgg caacacccca catggcaaag gtgtggtaaa gtccctgacg attggttctc
2041 tgatcgccag ggcctccggc ttgctccacg agagaatgga tgaattcgag ctccaaggct
2101 ctgacctgcc aaccttcaat tttgaccgca acaaagtcgc cgccttcaga caattagcag
2161 ctgaaaacaa atatggtctt atggacacat tgagggtcgg caaccaactg aaaagtgtta
2221 agaccctgga tgagctgaag caggccataa agaacatcag tatcaagaag tgtcagatag
2281 tgtataatgg atgcacctat gccatggaat ctgatgggag gggcaaggtt gtggttgaga
2341 aggtacaaaa cgcaacagtt caaaccaaca atgaacttgt aggggcgctc caccacctga
2401 gatccgcaag gataagatac tatgttaaat gttttcaaga agccatttac tctctactcc
2461 aaattgctgg tgcagccttt gtcacctcac gcatcgtgag gcgcatgaac atatcaaacc
2521 tctggtcgaa gccacccatc gaggagggtg acgagcctga agacagagga ggatgcccca
2581 agcccaggga tgaagatgac ctcactattg actctagaga cattaaagtg gaagggaaga
2641 agggcaagaa caagtctggc cggggcaaga aacacacagc cttctcttcc aagggcctca
2701 gtgatgaaga gtacgatgag tacaagagaa tcagagagga gaggaatggc aaatactcaa
2761 tagaggaata cctccaagat agggacagat actatgaaga gcttgccatt gctaaggcca
2821 ctgaggagga cttctgtgag gaggaggaga tcaaaatacg ccagagaatc ttccgaccca
2881 ccaggaagca gcggaaagag gaaagggcca cgcttgggct tgtcacagga tcggaaatca
2941 gaaagaggaa tccagatgac tttaaaccaa aaggaaaatt gtgggctgat gacaacagga
3001 gcgtggatta caatgagagg atagattttg aggctccccc gagtgtttgg tctaggatag
3061 tcaactttgg cacaggctgg ggattctggg tttctccaag tctctttata acttcaacac
3121 acgtcatacc aaaaggaatc actgaggcct ttggagtgcc cataaaccaa atccaaattc
3181 acaaatctgg agaattttgc cgcttgcggt ttccaaagcc aattaggcca gacgtgagtg
3241 ggatgatctt ggaagagggc gcccctgaag gcactgttgt gtctattctc atcaaaagga
3301 caacagggga gctgatgcct cttgcagtca gaatggggac tcatgccaca atgaaaatcc
3361 aaggtagaac ggtgggtggt cagatgggta tgcttctcac tggctcaaat gccaaaggca
3421 tggatctagg cacaacgcca ggtgactgcg gatgtccata catatacaaa aggggcaatg
3481 accttgtggt cattggggtg cacactgcag cagctcgtgg aggcaacacg gtcatatgtg
3541 ccacacaggg aagtgagggt gaagccactc ttgaaggaga tgacaacaag ggtacctatt
3601 gtggagcccc cattttggga cctggcaatg caccaaaact gagcacaaag acaaaattct
3661 ggagatcctc taacgcaccg cttcccccag gtacttatga accagcatac cttggtggga
3721 gagacccgcg cgtgaaggga ggcccatctc tgcagcaagt tatgagagat caactcaaac
3781 cttttacaga gcccagaggg aagccaccaa acccaaatgt cttagagtca gcaaagaaaa
3841 ctatcatcaa tgttctggaa caaaccattg acccccctca aaagtggtca tatgcccaag
3901 cttgtgcatc cctcgacaag acaacctcca gtggataccc gcaccacgtc cggaagaatg
3961 actactggag tggtgaatcc ttcacaggaa aacttgcaga tcaggcttca aaagcaaatc
4021 tcatgtatga ggaaggcaag cacatgcaac cagtttacac cgcagcactc aaagacgagc
4081 tcgtgaaaac tgacaaaatt tatggcaaaa tcaagaaaag actcctgtgg ggctccgacc
4141 tctccacaat gattcgatgc gccagagcat ttggtggtct catggatgaa ttcaaagcaa
4201 attgtattac actccctatc agagttggta tgaatatgaa tgaagatggt cccataatat
4261 ttgagaaaca ctccaggtac aggtaccact atgatgctga ttactcccgc tgggactcca
4321 cacaacagcg ggcagtgctt gaagcggcac ttgaaatcat ggtgagattt tctgctgagc
4381 cacagctggc acaaatagtg gcagaggacc tgctgtcacc aagtgtggtt gatgtgggcg
4441 atttcaaaat cgctatcaat gaaggcttac catctggcgt gccttgcacc tcacaatgga
4501 attctattgc ccactggtta ctcaccttgt gtgccctttc tgaagtgaca ggattaggtc
4561 ctgacatcat acaagctaac tccatgtact ctttctatgg tgatgatgag attgtgagca
4621 cagacataaa attggaccca gagaaattga ccgcaaagct caaagagtat ggccttaaac
4681 ccactcggcc cgacaaaact gaggggccgt tggtgattag tgaggacctg aatgggttga
4741 ctttcctccg ccgaacagtc acccgtgatc cagcaggttg gtttggaaag ttggaccaaa
4801 actccatcct caggcagttg tactggacaa gaggacccaa ccatgaagac cccagtgaga
4861 ccatgatacc acacgcacaa agacctgtgc agctcatggc actactagga gagtcctccc
4921 tacatggacc ctcattttac agcaaggtta gcaaattagt aatatctgaa cttaaagagg
4981 gaggaatgga tttttatgtg cccagacaag agtcaatgtt cagatggatg aggttctcag
5041 atctaagcac atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg
5101 tcgaatgacg ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaacaac
5161 gagacccttc ccctagaacc agttgcgggc gcagctatag ccgcacccgt cactggccaa
5221 aataatataa ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc
5281 acagtgtcac ccagaaactc tcctggagaa attttattaa atttagagtt gggccctgat
5341 ttgaaccctt atttggctca tttgtcaagg atgtacaatg ggtatgctgg tggagtggaa
5401 gttcaggttc tcctggcagg gaacgcgttc actgccggaa agatcctctt cgccgccgtc
5461 ccgccaaatt tcccagtgga attcttaagc ccagcccaga tcacaatgct cccacattta
5521 atagtagatg ttaggactct tgagccaatt atgatcccac tccctgacgt taggaataca
5581 ttcttccatt atagcaacca gcctaacagc cgcatgagat tagtggctat gctctatacc
5641 ccactcagat ctaatggttc aggtgatgat gtctttactg tctcttgcag ggttttgact
5701 aggcctactc ctgattttga gttcacttat ttagtgccac cttctgttga atccaaaact
5761 aagccttttt ccttacctat tttaaccctt tctgagctca caaattcgag gtttccagtc
5821 cccatcgatt cgctttttac cgcccagaat aatgtgttgc aggtgcagtg tcaaaatggc
5881 aggtgtacac ttgatggcga gttacaaggc acaacccagt tgctcccaac tggcatctgc
5941 gcattcagag gacgggtgac agcacaaatt aaccaacgtg acaggtggca catgcaactg
6001 caaaacctca atggcacaac atatgaccca actgatgatg tgccagcccc gctgggtaca
6061 cctgacttca agggcgtcgt gtttgggatg gtaagccaaa gaaatgtggg taatgatgcg
6121 cctggctcaa ccagagccca acaggcgtgg atttcaacct atagccccca atttgtcccc
6181 aaattaggtt ctgtcaatct cagaattagt aataatgatg atttccaatt ccagccgaca
6241 aaattcacac cagtgggcgt caatgatgac gatgatgacc acccgttcag acagtgggaa
6301 ctaccaaact attcagggga gcttaccttg aatatgaatc ttgccccccc agttgctcca
6361 aattttcctg gtgaacaact gttattcttc agatctttcg tgccatgctc aggaggttac
6421 aaccaaggta ttatagattg tcttattccc caagaatgga tccaacattt ctatcaggaa
6481 tcagcaccct cccagtcaga cgtggcccta atcaggtatg tcaaccccga tacgggacgt
6541 acactgtttg aagcaaaatt gcacagatct ggttacatta ctgtggctca ctctggagac
6601 tatcctcttg ttgttccggc taatggacac tttagatttg attcttgggt aaatcagttt
6661 tactcactcg ccccaatggg aactgggaat gggcgaagga gggctcagta atggctgggg
6721 ctttcattgc aggattggca ggcgacatgc tcacgtcatc tgtgggctcc cttgtgaacg
6781 caggggcaaa cgccatcaac caaaagatag actttgaaaa taacaaacaa ctccagtctg
6841 cttcctttca gcatgataaa gagatgctcc aagcgcaggt gagggcaacc aagcagctgc
6901 aatctgaaat gatagcccta aaacaggggg ttttggccgc aggcggcttt tcccccactg
6961 atgcagcacg gggatccatt ggtgcaccca tgacaaaggt gcttgactgg tctggcactc
7021 gatactgggc gcccaattcc acaaagacaa ctggctattc gggacaattc acctcttcac
7081 ctgtgcatat gcctagccca aatgctccac aatcaaaacc tgcaaagcct aggtctctag
7141 ctccttcctc ttcttctagt agtatctata gtatgtacac tcagtctact catttgacat
7201 ctggctcttc tagtaatgct tcttctgcct ccacaaaatt gacaaattta agctctggct
7261 cctctcaaaa cagaacagca gagtgggtaa atcaacagag aagtcttagc cccttcatga
7321 gtggcgcact taacatctca catgtcacgc caccctcaag tagggcttcc agttctggga
7381 cggtctcgac cgtgcccaag gaagttttgg actcctggac gtctgcgttt aacacacaca
7441 gacagccgct cttcgcacac ctcagagtga ggggggagtc acgtgtttag tgaaaaga
//