Typing tool
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Typing tool
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Complete norovirus genomes
| PZ053849 | GII.17 | |
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| GII.P17 |
ORF1: 1..5078
ORF2: 5059..6675
ORF3: 6675..7454
LOCUS PZ053849 7521 bp RNA linear VRL 04-MAR-2026
DEFINITION Norovirus GII isolate Hu/GII.17/JP/2026/MT006 nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION PZ053849
VERSION PZ053849.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7521)
AUTHORS Okamoto,M. and Saito,M.
TITLE Direct Submission
JOURNAL Submitted (25-FEB-2026) Virology, Graduate School of Medicine,
Tohoku University, 2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi
980-8575, Japan
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 26
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7521
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.17/JP/2026/MT006"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Japan"
/collection_date="08-Jan-2026"
/note="genotype: GII.P17-GII.17"
gene <1..5078
/gene="ORF1"
CDS <1..5078
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="YDE71428.1"
/translation="VAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPPGETKQ
TLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTAYSV
PPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIELTP
LSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQ
RTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKPLNIMN
ILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAVELVPV
VMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANEL
AMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYMRTLDLEEEKARKLSSKSASPDIV
GTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTL
SGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQ
PDMWKDHYRSDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGLLHERM
DEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIK
NITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSARIRYYV
KCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKPRDEDD
LTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKR
NPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTH
VIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIK
RTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK
RGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLS
TKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPS
VLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGK
LADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCAR
AFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVL
EAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTR
PDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSET
MIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..968
/gene="ORF1"
/product="p48"
mat_peptide 969..2066
/gene="ORF1"
/product="NTPase"
mat_peptide 2067..2603
/gene="ORF1"
/product="p22"
mat_peptide 2604..3002
/gene="ORF1"
/product="VPg"
mat_peptide 3003..3545
/gene="ORF1"
/product="Pro"
mat_peptide 3546..5075
/gene="ORF1"
/product="RdRp"
gene 5059..6675
/gene="ORF2"
CDS 5059..6675
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDE71429.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6675..7454
/gene="ORF3"
CDS 6675..7454
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDE71430.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSPSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 ccgttgctgg caaaaacaac aacaacgaca atgtaaaatc ttcaagtgac agcttgtttt
61 ctaacatgac tgttactttt aagaaagccc tcggggcgcg gtctaagcag ccgcccccgg
121 gagaaacaaa acaaacacta agaccaccaa ggccgccgac accggaattg gtgaagaaga
181 tacccccacc cccccccaat ggcgaggatg aaccaaaggt aacgtataag gtgggagaag
241 gtgtgtctgg gctgcccgac ttaacaaccg tggcacaacc tgacgcacag aacacagcct
301 atagtgtccc cccacttagc cagagagagg tcggcgaagc tagagaaccg ttgcctggct
361 ccattttgga aatgtgggat ggtgagatct accactatgg gctgtatgtt gagcgggggc
421 atgtgctggg agtgcacaaa ccacctgctg caataagcct tgccaaaatt gagttaacac
481 cgctgtctct ctactggaga gtggtctaca ctccccagta cttgatagct ccagagaccc
541 tcaagaattt aaatggagag actttcccat acacggcctt tgacaacaac tgttatgcct
601 tctgttgttg ggttctggac ctcaacgact cctggcttag cagaagaatg gtccaaagaa
661 caaccggatt cttcagaccg tatcaggact ggaacagaaa acccttacca accatggatg
721 aaccaaaaat caagaaggcc gcgaatgctg ttctgtgtgc tctctcctca ctcttcacta
781 ggcccatcaa agatgtcatt ggaaagctta aaccactaaa cattatgaac atactggcaa
841 cttgtgattg gacttttgcg ggcatagtgg aatccatgat ccttcttgct gaactctttg
901 gggtgttctg gacgccccca gatgtgtctg caataattgc tcccttactc ggtgactacg
961 agatgcaagg ccccgaagac ctggccgtgg aacttgtgcc cgtagtaatg ggaggaatag
1021 gtttggtgtt aggattcacc aaggaaaaga tcggcaagat gctttcatca gctgcaacca
1081 cactcagggc ctgtaaggat ctaggatctt atgggttgga gatactcaaa ctggtcatga
1141 agtggttctt ccccaagaag gaggaggcca acgagttagc catggtgagg gccattgagg
1201 atgcagttct ggatttggag gcaatagaaa acaaccacat gaccactctc cttaaggaca
1261 aagacgccct ggccacatac atgaggactc ttgacttgga agaagaaaaa gcaaggaaac
1321 tatcttccaa atcggcgtca cctgacatcg tgggcacagt aaacgcatta ttggcaagaa
1381 tagcagccgc caggtcactg gtccacaagg ctaaggagga gctctcgagc agacagagac
1441 ctgttgttgt aatgatatca ggtaggccag gtataggaaa gacccatctg gccagagagc
1501 tagccaagaa ggttgcgtca acactgtcag gcgaccaaag gattggactg atacccagaa
1561 atggcgtcga ccattgggac gcctacaaag gagagcgggt ggttctgtgg gatgactatg
1621 gcatgagcaa ccctatacag gacgcactga ggctccaaga attggctgac acctgtcctc
1681 tgaccctaaa ttgtgacaga attgaaaaca aaggaaaagt gttcgacagt gacgccataa
1741 tcataacgac caaccttgca aacccagcac cattggatta tgtcaacttt gaggcttgtt
1801 ccagacgcat agacttcttg gtgtatgcag acgcacctga catcgagaag gctaagcgtg
1861 acttccctgg ccaaccagat atgtggaaag accattacag atcagacttc tcacacatta
1921 aacttcagct cgcaccacag ggaggctttg ataagagtgg caacacccca catggcaaag
1981 gtgtggttaa gtctctgacg attggttctc tgatcgccag ggcttctggc ttgctccatg
2041 agagaatgga tgaattcgag ctccaaggcc ccaacttgcc aaccttcaat ttcgaccgta
2101 acaaagtcgc cgccttcaga caattggcag ctgaaaacaa atacggtctt atggacacac
2161 tgagggtcgg caaccaactg aaaagtgtca aaaccctgga tgagctgaag caggctataa
2221 agaacatcac catcaagaag tgccagatag tgtacaatgg atgcacctac accatggaat
2281 ctgatgggag gaacaaggtt gtggttgaaa aggttcaaaa tgcaacagtc caaaccaaca
2341 atgaacttgc aggagcactc caccacctga gatctgcaag aataaggtat tatgtcaaat
2401 gtttccaaga agctatttac tctatactcc aaattgctgg tgcagccttc gtcaccacac
2461 gcatcgtgag gcgcatgaac atctcaaacc tctggtcgaa gccacccgtc gaagagggtg
2521 atgaacctga agacaaaggg gggtgcccca agcccaggga tgaagatgac ctcactattg
2581 actccaaaga cattaaagca gaaggtaaga agggcaagaa caaatctggc cggggcaaga
2641 aacacacagc tttctcatcc aagggcctca gtgatgaaga gtacgatgag tacaagagaa
2701 tcagggagga gagaaatggc aagtactcaa tagaagaata cctccaggat agggatagat
2761 actatgaaga gcttgccatt gctaaggcca ctgaggaaga cttctgtgaa gaggaggaaa
2821 tcaaaattcg ccagagaatc ttccggccca ccaggaagca gcggaaagag gaaagagcca
2881 cgcttgggct cgtcacagga tcggaaatca gaaagaggaa cccagatgat tttaagccaa
2941 aaggaaaatt gtgggctgat gacaacagga gtgtggacta caatgagagg atagattttg
3001 aggctccccc aagtgtttgg tctaggatag tcaactttgg tacagggtgg ggattctggg
3061 tctccccaag tctctttata acttcaacac atgtcatacc aaaaggaatc actgaggcct
3121 ttggagttcc cattaaccaa attcaaattc acaaatctgg agagttttgc cgcttgcggt
3181 ttccaaaacc aatcaggcca gacgtgagtg gaatgatctt ggaagagggt gcccctgaag
3241 gcactgttgt ttccattctc atcaagagga cgacagggga actgatgcct ctcgcagtca
3301 gaatgggaac tcatgccaca atgaaaatcc aaggtaggac ggtgggcggt caaatgggca
3361 tgcttctcac tggctcaaac gccaaaagca tggacctagg cacaacacca ggtgactgtg
3421 ggtgcccata catatacaaa aggggcaatg acttcgtggt cattggggtg cacactgcag
3481 cagcccgtgg aggtaacacg gtcatatgtg ccacacaggg gagtgaaggc gaagccaccc
3541 tcgaaggagg tgacaacaag ggcacctatt gtggggcccc catcttgggt cctggcaacg
3601 caccaaaatt gagcacaaaa acaaaattct ggagatcttc taacgcgccg ctcccgccag
3661 gcacctatga accagcatac cttggtggaa aagacccgcg tgtgaaggga ggcccatctc
3721 tacaacaggt tatgagagac caactcaaac cttttacaga gcccagaggg aaaccaccaa
3781 aaccaagtgt cctagaatca gcaaagaaga ccatcattaa tgttctggaa caaaccattg
3841 acccccctga aaagtggtca tatgcccaag cttgtgcatc cctcgacaag acaacctcca
3901 gtggataccc gcatcacgtc cggaagaatg actactggag tggtgaatct ttcacgggga
3961 aacttgcgga ccaggcctca aaagcaaatc tcatgtatga ggaaggtaag cacatgcaac
4021 cagtttacac cgcagcactc aaagacgagc tcgtgaaaac tgacaaaatt tatggcaaga
4081 tcaagaaaag actcctgtgg ggctctgacc tatccaccat gattcggtgc gccagggcat
4141 ttggtggcct catggacgag ctcaaagcaa attgtatcac actccctatc agagttggta
4201 tgaacatgaa tgaagatggt cccataatat ttgaaaagca ctccaggtac aggtaccact
4261 atgatgctga ttattcccgc tgggattcca cacaacagcg ggcagtgctg gaagcggcac
4321 ttgaaatcat ggtgagattt tctgctgagc cacaattggc acaaatagtg gcagaggacc
4381 tgctatcacc aagtgtggtt gatgtgggcg atttcaaaat tactattaat gaaggcctac
4441 catctggcgt gccttgcact tcacaatgga attctattgc ccactggtta ctcaccctat
4501 gtgccctgtc tgaagtgaca ggactaggcc ctgacatcat acaagccaac tccatgtact
4561 ctttctatgg tgatgatgag atagtgagca cagacataaa attagaccca gagaaattga
4621 ctgcaaaact caaagaatat ggtcttaaac ccacccggcc tgacaagact gaggggccac
4681 tggtaattag tgaggacctg aatgggttga ctttcctccg ccgaacagtc acccgcgatc
4741 cagcgggttg gtttggaaag ttggaccaaa actccatcct cagacagctg tactggacaa
4801 ggggacccaa ccatgaagac cccagtgaga ctatgatacc acacgcacag agacctgtgc
4861 agctcatggc attgctcgga gaatcctccc tacatggacc ctcattttac agcaaggtta
4921 gcaagctggt tatatctgaa cttaaagaag gaggaatgga tttttatgtg cccagacaag
4981 agtcaatgtt caggtggatg aggttctcag atctaagcac atgggagggc gatcgcaatc
5041 tggctcccag ttttgtgaat gaagatggcg tcgaatgacg ccgctccatc taatgatggt
5101 gctgctggtc tcgtaccaga gggcaataac gagacccttc ccctagaacc agttgcgggc
5161 gcagccatag ccgcacccgt cactggccaa aataatataa ttgacccctg gattagaaca
5221 aattttgtgc aagcaccaaa tggagagttc acagtgtcac ccagaaactc tcctggagaa
5281 attttactaa acctagagtt gggccctgat ctgaaccctt atttggctca tttgtcaagg
5341 atgtataatg gatatgctgg tggggttgaa gttcaggttc tcctggcagg gaacgcgttc
5401 actgccggga agatcctctt cgccgctgtc ccgccaaatt ttccggtgga attcttaagc
5461 ccagcccaga ttacaatgct cccacatata atagtagatg ttaggactct tgaaccaatt
5521 atgatcccat tacctgatgt taggaacaca ttcttccact ataataatca gcccaacagc
5581 cgcatgagat tagtggctat gctctacacc ccccttagat ctaatggctc aggtgatgat
5641 gttttcactg tttcttgcag ggttttgact aggcctactc ctgattttga gttcacttat
5701 ctagtgccac cctctgttga atctaagact aaaccctttt ctttacccat tctaaccctt
5761 tctgagctca caaattcgag gttcccggtc cccatcgatt cgcttttcac cgcccaaaat
5821 aatgtgttgc aggtgcagtg tcaaaatggc aggtgcacac ttgacggtga gctacaaggc
5881 acaacccagt tgctcccatc tggcatctgt gcgttcaggg gacgggtgac agcagaaact
5941 gacaaccctg acaagtggca catgcaactg caaaacctca atggcacaac atatgaccca
6001 actgatgatg tgccagcccc actgggtaca cctgacttca agggcgtcgt gtttgggatg
6061 gcaagccaaa gaaatgtggg taacgacgcg cccggctcaa ccaggtccca tgaggcggtg
6121 atttcaacct acagccccag atttgttcct aaattaggct ctgtcaattt caaaagcaat
6181 gacgatgatt tccaattgca gccaacaaga ttcacaccag tgggcattaa tgatgatggc
6241 aaccaaccat tcagacaatg ggaactacca gattattcag gggtgcttac cttgaatatg
6301 aaccttgccc cccctgttgc tccaaatttc cccggcgaac aattactatt cttcagatct
6361 tctgtgccat gttcaggagg ttacaaccaa ggtattatag attgccttat cccccaagaa
6421 tggatccaac atttctacca ggaatcagca ccttctcagt cagaagtggc cctaatcagg
6481 tacgtcaacc ccgacacggg tcgtacactg tttgaggcaa aattgcatag gtcaggctat
6541 atcactgtgg ctcattctgg agactatcct cttgttgttc cggctaatgg atactttaga
6601 tttgactctt gggtaaatca gttttactca ctcgccccaa tgggaactgg gaatgggcga
6661 aggagggctc agtaatggct ggagctttca ttgcaggatt ggcgggtgac atgctcacgt
6721 catccgtggg ctccctggtg aacgcagggg caaacgccat caaccaaaag atagactttg
6781 aaaacaacaa acaactccag tctgcttcct ttcaacatga taaagagatg ctccaagcgc
6841 aggtgaacgc aaccaagcag ctgcaatctg agatgatagc cctaaaacag ggggttttgg
6901 ccgcaggcgg cttttccccc actgatgcag cgaggggggc catcggtgca cccatgacaa
6961 aggtgcttga ctggtctggc actcgatact gggctcccaa ttccacaaag acaactggtt
7021 attcggggca attcacctct tcacctgtgc acatgcccag cccgagtgtc ccacaatcaa
7081 aacccgcaaa gcccaagtct ctaggttctc cttcttcttc tagtagtgtt tacagtatgt
7141 ctacccaatt aacttctcta acatctggct cttctagtaa tgcttcttct gcttctacaa
7201 aattgacaaa tttgagctcc ggctcttctc aaaacagaac agcagagtgg gtgaaccaac
7261 agagaagtct cagccctttc atgagtggcg cactcaatat ctcgcatgtc acgccacctt
7321 caagtagggc ctccagttct gggacggtct caaccgtgcc caaggaagtt ttggactcct
7381 ggacatctgc attcaacaca cgcagacagc cgctcttcgc acacctcaga gtgagggggg
7441 agtcacgtgt ttagtgaaaa gaaaataatt ggctataata tgatttcttt aaaactcaaa
7501 tctggctaat ttgtatcttt t
//