Typing tool
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Typing tool
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Complete norovirus genomes
| PZ038587 | GII.17 | |
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| GII.P17 |
ORF1: 1..1371
ORF2: 1352..2968
ORF3: 2968..3495
LOCUS PZ038587 3495 bp RNA linear VRL 14-JUL-2026
DEFINITION Norovirus GII isolate Hu/US/2024/GII.17[P17]/Providence0099
nonstructural polyprotein, RdRp region, (ORF1) gene, partial cds;
VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds.
ACCESSION PZ038587
VERSION PZ038587.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3495)
AUTHORS Barclay,L., Wikswo,M.E., Wall,H., Kambhampati,A.K.,
Montmayeur,A.M., Mallory,M.L., Lindesmith,L.C., Mirza,S.A.,
Baric,R.S., Vinje,J. and Chhabra,P.
TITLE Epidemiology and molecular evolution of norovirus GII.17 in the
United States, 2021-2025
JOURNAL J Infect Dis (2026) In press
PUBMED 42418796
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 3495)
AUTHORS Popowich,M., Barclay,L., Montmayeur,A.M., Vinje,J. and Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (23-FEB-2026) Viral Gastroenteritis Branch, Division of
Viral Diseases, Centers for Disease Control and Prevention, 1600
Clifton Road NE, Atlanta/GA, GA 30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: CN 2.0 Pipeline v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3495
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/US/2024/GII.17[P17]/Providence0099"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA"
/collection_date="15-Apr-2024"
/note="genotype: GII.17[P17]"
gene <1..1371
/gene="ORF1"
CDS <1..1371
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YDD39366.1"
/translation="GGPSLQQVMRDQLKPFTEPRGKPPKPSVLESAKKTIINVLEQTI
DPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKH
MQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDELKANCITLP
IRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLA
QIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPD
IIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGL
TFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGE
SSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFV
NEDGVE"
mat_peptide <1..1368
/gene="ORF1"
/product="RdRp"
gene 1352..2968
/gene="ORF2"
CDS 1352..2968
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YDD39367.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 2968..>3495
/gene="ORF3"
CDS 2968..>3495
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YDD39368.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLTSGSSSNASSASTK"
ORIGIN
1 ggaggcccat ctctacaaca ggttatgaga gaccaactca aaccttttac agagcccaga
61 gggaagccac caaagccaag tgtcctagaa tcagcaaaga agaccatcat taatgttctg
121 gaacaaacca ttgacccccc tgaaaagtgg tcatatgccc aagcttgtgc atccctcgac
181 aagacaacct ccagtggata cccgcatcac gtccggaaga atgattactg gagtggtgaa
241 tccttcacgg ggaaacttgc agaccaggcc tcaaaagcaa atctcatgta tgaggaaggt
301 aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa aactgacaaa
361 atttatggca agatcaagaa aagactcctg tggggctctg acctatccac catgattcga
421 tgcgccaggg catttggtgg cctcatggat gagctcaaag caaattgtat cacactccct
481 atcagagttg gtatgaacat gaatgaagat ggtcccataa tatttgaaaa gcactccagg
541 tacaggtacc actatgatgc tgattattcc cgctgggatt ccacacaaca gcgggcagtg
601 ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagtt ggcacaaata
661 gtggcagagg acctgctatc accaagtgtg gttgatgtgg gcgatttcaa aattgctatt
721 aatgaaggcc taccatctgg cgtgccttgc acttcacaat ggaattctat tgcccactgg
781 ttactcaccc tatgtgccct gtctgaagtg acaggactag gccctgacat catacaagcc
841 aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat aaaattagac
901 ccagagaaat tgactgcaaa actcaaagaa tatggtctta aacccacccg gcctgacaag
961 actgaggggc cactggtgat tagtgaggac ctgaatgggt tgactttcct ccgccgaaca
1021 gtcacccgcg atccagcggg ttggtttgga aagttggatc aaaactccat cctcagacag
1081 ctgtactgga caaggggacc caaccatgaa gaccccagtg agactatgat accacacgca
1141 cagagacctg tgcagctcat ggcattgcta ggagaatcct ccctacatgg accctcattt
1201 tacagcaagg ttagcaagct ggttatatct gaacttaaag agggaggaat ggatttttat
1261 gtgcccagac aagagtcaat gttcaggtgg atgaggttct cagatctaag cacatgggag
1321 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc
1381 atctaatgat ggtgctgctg gtctcgtacc agagggcaac aacgagaccc ttcccctaga
1441 accagttgcg ggcgcagcca tagccgcacc cgtcactggc caaaataata taattgaccc
1501 ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt cacccagaaa
1561 ctctcctgga gaaattttac taaacctaga attgggcccc gatctgaacc cttatttggc
1621 tcatttgtca aggatgtata atggatatgc tggtggagtt gaagtccagg ttctcctggc
1681 agggaacgcg ttcactgccg ggaagatcct cttcgccgct gtcccgccaa attttccagt
1741 ggaattctta agcccagccc agattacaat gctcccacat ataatagtag atgttaggac
1801 tcttgaacca attatgatcc cgttacctga tgttaggaat acattcttcc actataataa
1861 tcagcccaac agccgcatga gattagtggc tatgctctac acccccctta gatctaatgg
1921 ctcaggtgat gatgttttca ctgtttcttg cagggttttg actaggccta ctcctgattt
1981 tgagttcact tatctagtgc caccctctgt tgaatctaag actaaaccct tttctttacc
2041 cattctaacc ctttctgagc tcacaaattc gaggttcccg gtccccatcg attcgctttt
2101 caccgcccaa aataatgtgt tgcaggtgca atgtcaaaat ggcaggtgca cacttgacgg
2161 tgagctacaa ggcacaaccc agttgctccc atctggcatc tgtgcgttca ggggacgggt
2221 gacagcagaa actgacaatc ctgacaagtg gcacatgcaa ctgcaaaacc ttaatggcac
2281 aacatatgac ccgactgatg atgtgccagc cccattgggt acacctgact tcaagggcgt
2341 cgtgtttggg atggcaagcc aaagaaatgt gggtaacgac gcgcccggtt caaccaggtc
2401 ccatgaggcg gtgatttcaa cctacagccc cagatttgtt cctaaattag gctctgtcaa
2461 tttcaaaagc aatgacgatg atttccaatt gcagccaaca agattcacac cagtgggcat
2521 taatgatgat ggcaaccaac cattcagaca atgggaatta ccagattatt caggggtgct
2581 taccttgaat atgaaccttg cccccccggt tgctccaaat ttccctggcg aacaattgct
2641 attcttcaga tcttctgtgc catgttcagg aggttacaac caaggtatta tagattgcct
2701 tatcccccaa gaatggatcc aacacttcta ccaggaatca gcaccttctc agtcagaagt
2761 ggccctaatc aggtacgtca accccgacac gggtcgcaca ctgtttgagg caaaattgca
2821 taggtcaggc tatatcactg tggctcactc tggagactat cctcttgttg ttccggctaa
2881 tggatacttt agatttgact cttgggtaaa tcagttttac tcactcgccc caatgggaac
2941 tgggaatggg cgaaggaggg ctcagtaatg gctggagctt tcattgcagg attggcgggt
3001 gacatgctca cgtcatccgt gggctccctg gtgaacgcag gggcaaacgc catcaaccaa
3061 aagatagact ttgaaaacaa caaacaactc cagtctgctt cctttcaaca tgataaagag
3121 atgctccaag cgcaggtgaa cgcaaccaag cagctgcaat ctgagatgat agccctaaaa
3181 cagggggttt tggccgcagg cggcttttcc cccactgatg cagcgagggg ggccatcggt
3241 gcacccatga caaaggtgct tgactggtct ggcactcgat actgggctcc caattccaca
3301 aagacaactg gttattcggg gcaattcacc tcctcacctg tgcacatgcc cagcccgagt
3361 gtcccacaat caaaacccgc aaagcccaag tctctaggtt cttcttcttc ttctagtagt
3421 gtttacagta tgtctaccca attaacttct ctaacatctg gctcttctag taatgcttct
3481 tctgcttcta caaaa
//