Typing tool
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Typing tool
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Complete norovirus genomes
| PX905479 | GII.17 | |
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| GII.P17 |
ORF1: 1..4972
ORF2: 4953..6575
ORF3: 6575..6905
LOCUS PX905479 6905 bp RNA linear VRL 16-JUL-2026
DEFINITION Norovirus GII isolate 055BT-2023 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION PX905479
VERSION PX905479.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 6905)
AUTHORS zhang,C.
TITLE Genomic Evolutionary Analysis of Four Genotypes of Norovirus
Strains in Baotou Region, 2023-2024
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 6905)
AUTHORS zhang,C.
TITLE Direct Submission
JOURNAL Submitted (21-JAN-2026) School of Public Health, Henan Medical
University, No. 601, Jinsui Avenue, Xinxiang, Henan 453000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..6905
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="055BT-2023"
/isolation_source="throat swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Inner Mongolia_Baotou"
/collection_date="Jan-2023"
/note="genotype: GII.17[P17]"
gene <1..4972
/gene="ORF1"
CDS <1..4972
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="YCO26657.1"
/translation="PPPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEG
VSGLPDLTTVAQPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVER
GHVLGVHKPPAAISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNN
CYAFCCWVLDLNDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCAL
SSLFTRPIKDIIGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMI
APLLGDYEMQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSY
GLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMR
TLDLEEEKARKLSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMIS
GRPGIGKTHLARELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNP
IQDALRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRR
IDFLVYADAPDIEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKG
VVKSLTIGSLIARASGLLHERMRMTFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLM
DTLRVGNQLKSVKTLDELKQAIKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNAT
VQTNNELVGALHHLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSK
PPIEEGDEPEDRGGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSD
EEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRP
TRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWS
RIVNFGTGWGFWVSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIR
PDVSGMILEEGAPEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLT
GSNAKGMDLGTTPGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLE
GDDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDSRVKGGPS
LQQVMRDQLKPFTEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKT
TSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDK
IYGKIKKRLLWGSDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKH
SRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDF
KIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVS
TDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKL
DQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVIS
ELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..859
/gene="ORF1"
/product="p48"
mat_peptide 860..1960
/gene="ORF1"
/product="NTPase"
mat_peptide 1961..2497
/gene="ORF1"
/product="p22"
mat_peptide 2498..2896
/gene="ORF1"
/product="VPg"
mat_peptide 2897..3439
/gene="ORF1"
/product="Pro"
mat_peptide 3440..4969
/gene="ORF1"
/product="RdRp"
gene 4953..6575
/gene="ORF2"
CDS 4953..6575
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YCO26658.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPAGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6575..>6905
/gene="ORF3"
CDS 6575..>6905
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YCO26659.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNS"
ORIGIN
1 accgcccccg ggagaaacaa aacaaataca aaaaccacca aggccaccga caccggaatt
61 ggtgaagaaa atacctccac ccccacccaa tggcgaggac gaaccaggga tagtgtacaa
121 ggtgggagag ggtgtgtctg ggctgcccga cctaacaact gtggcacaac ctgacgcaca
181 aaacacagct tatagtgttc ccccacttag ccagagagaa gtcggcgaag ctaaagaacc
241 gctgcctggc tccattctgg aaatgtggga tggtgagatc taccactatg ggctgtatgt
301 tgagcggggg catgtgctcg gagtgcacaa accacctgct gcaataagcc tcgccaaaat
361 tgaaataaca ccgttgtctc tctactggag agtggtctac actccccagt atttgataga
421 tccaggaact ctcaagaact tgagtggaga gactttccca tacacggcct ttgataacaa
481 ctgttatgcc ttctgttgct gggtcctaga cctcaacgac tcctggctta gcaggagaat
541 gatccaaaga acaactggat ttttcaaacc ttatcaggat tggaacagaa aacccttacc
601 aaccatggat gaaccgaaaa tcaagaaggc cgcgaatgct gtcttatgcg ctctctcctc
661 actcttcact agacccatta aggacatcat tgggaagctt agaccactga acattcttaa
721 tatactggca acctgcgatt ggacttttgc aggcatagtg gaatccttga tccttcttgc
781 tgaactcttt ggggtgttct ggacaccccc agatgtgtct gcgatgattg ctcccttact
841 cggtgactac gagatgcagg gccccgaaga cctggccgtg gaacttgtgc ccgtggtgat
901 gggaggaata ggtttggtgt taggattcac caaagaaaag atcggcaaga tgctttcgtc
961 agctgcgacc acactcaggg cctgcaagga tctaggatct tatggattgg agatactcaa
1021 attggtcatg aagtggttct tccccaagaa ggaggaggct aacgaactag ccatggtaag
1081 ggccattgag gatgcagtcc tggatttgga ggcaatagaa aacaatcata tgaccaccct
1141 tctcaaggat aaagacagcc tggccacata catgaggact cttgacttgg aagaagagaa
1201 agcaaggaaa ctgtcaacca aatcggcgtc acctgacatc gtgggtacaa taaacgcatt
1261 gttggctagg atagcagccg ccaggtcact ggtccacaag gctaaggagg agctctcgag
1321 cagacagaga cctgttgttg taatgatatc aggtagacca ggtataggaa agacccatct
1381 ggccagagag ctagccaaga aagttgcgtc aacactgtca ggcgaccaaa ggattggact
1441 ggtgcctagg aatggcgtcg accattggga cgcctacaag ggagaaaggg tggtcctgtg
1501 ggatgattat ggtatgagca accctataca agacgcactg aggctccaag aattggctga
1561 cacctgtcct ctgaccctaa attgtgatag gattgaaaat aaaggaaaag tgttcgacag
1621 tgatgccata attataacaa ccaaccttgc aaacccagca ccactagact atgtcaactt
1681 tgaggcctgc tctagacgca tagacttctt ggtgtatgca gacgcacctg acattgagaa
1741 ggctaagcgt gatttccctg gccaaccaga tatgtggaaa gatcatttta gaccagactt
1801 ctcacacatt aaacttcagc tggcaccaca gggaggtttt gacaaaaatg gcaacacccc
1861 acatggcaaa ggtgtggtaa agtccctgac gattggttct ctgatcgcca gggcctccgg
1921 cttgctccac gagagaatgc gcatgacatt cgagctccaa ggctctgacc tgccaacctt
1981 caattttgac cgcaacaaag tcgccgcctt cagacaatta gcagctgaaa acaaatatgg
2041 tcttatggac acattgaggg tcggcaacca actgaaaagt gttaagaccc tggatgagct
2101 gaagcaggcc ataaagaaca tcagtatcaa gaagtgtcag atagtgtata atggatgcac
2161 ttatgccatg gaatctgatg ggaggggcaa ggttgtggtt gagaaggtac aaaacgcaac
2221 agttcaaacc aacaatgaac ttgtaggggc gctccaccac ctgagatccg caaggataag
2281 atactatgtt aaatgttttc aagaagccat ttactctcta ctccaaattg ctggtgcagc
2341 ctttgtcacc tcacgcatcg tgaggcgcat gaacatatca aacctctggt cgaagccacc
2401 catcgaggag ggtgacgagc ctgaagacag aggaggatgc cccaagccca gggatgaaga
2461 tgacctcact attgactcta gagacattaa agtggaaggg aagaagggca agaacaagtc
2521 tggccggggc aagaaacaca cagccttctc ttccaagggc ctcagtgatg aagagtacga
2581 tgagtacaag agaatcagag aggagaggaa tggcaaatac tcaatagagg aatacctcca
2641 agatagggac agatactatg aagagcttgc cattgctaag gccactgagg aggacttctg
2701 tgaggaggag gagatcaaaa tacgccagag aatcttccga cccaccagga agcagcggaa
2761 agaggaaagg gccacgcttg ggcttgtcac aggatcggaa atcagaaaga ggaatccaga
2821 tgactttaaa ccaaaaggaa aattgtgggc tgatgacaac aggagcgtgg attacaatga
2881 gaggatagat tttgaggctc ccccgagtgt ttggtctagg atagtcaact ttggcacagg
2941 ctggggattc tgggtttctc caagtctctt tataacttca acacacgtca taccaaaagg
3001 aatcactgag gcctttggag tgcccataaa ccaaatccaa attcacaaat ctggagaatt
3061 ttgccgcttg cggtttccaa agccaattag gccagacgtg agtgggatga tcttggaaga
3121 gggcgcccct gaaggcactg ttgtgtctat tctcatcaaa aggacaacag gggagctgat
3181 gcctcttgca gtcagaatgg ggactcatgc cacaatgaaa atccaaggta gaacggtggg
3241 tggtcagatg ggtatgcttc tcactggctc aaatgccaaa ggcatggatc taggcacaac
3301 gccaggtgac tgcggatgtc catacatata caaaaggggc aatgaccttg tggtcattgg
3361 ggtgcacact gcagcagctc gtggaggcaa cacggtcata tgtgccacac agggaagtga
3421 gggtgaagcc actcttgaag gagatgacaa caagggtacc tattgtggag cccccatttt
3481 gggacctggc aatgcaccaa aactgagcac aaagacaaaa ttctggagat cctctaacgc
3541 accgcttccc ccaggtactt atgaaccagc ataccttggt gggagagact cgcgcgtgaa
3601 gggaggccca tctctgcagc aagttatgag agatcaactc aaacctttta cagagcccag
3661 agggaagcca ccaaacccaa atgtcttaga gtcagcaaag aaaactatca tcaatgttct
3721 ggaacaaacc attgaccccc ctcaaaagtg gtcatatgcc caagcttgtg catccctcga
3781 caagacaacc tccagtgggt acccgcacca cgtccggaag aatgactact ggagtggtga
3841 atccttcaca ggaaaacttg cagatcaggc ttcaaaagca aatctcatgt atgaggaagg
3901 caagcacatg caaccagttt acaccgcagc actcaaagac gagctcgtga aaactgacaa
3961 aatttatggc aaaatcaaga aaagactcct gtggggctcc gacctctcca caatgattcg
4021 atgcgccaga gcatttggtg gtctcatgga tgaattcaaa gcaaattgta ttacactccc
4081 tatcagagtt ggtatgaata tgaatgaaga tggtcccata atatttgaga aacactccag
4141 gtacaggtac cactatgatg ctgattactc ccgctgggac tccacacaac agcgggcagt
4201 gctggaagcg gcacttgaaa tcatggtgag attttctgct gagccacagc tggcacaaat
4261 agtggcagag gacctgctgt caccaagtgt ggttgatgtg ggcgatttca aaatcgctat
4321 caatgaaggc ttaccatctg gcgtgccttg cacctcacaa tggaattcta ttgcccactg
4381 gttactcacc ttgtgtgccc tttctgaagt gacaggatta ggtcctgaca tcatacaagc
4441 taactccatg tactctttct atggtgatga tgagattgtg agcacagaca taaaattgga
4501 cccagagaaa ttgaccgcaa agctcaaaga gtatggcctc aaacccactc ggcccgacaa
4561 aactgagggg ccgttggtga ttagtgagga cctgaatggg ttgactttcc tccgccgaac
4621 agtcacccgt gatccagcag gttggtttgg aaagttggac caaaactcca tcctcaggca
4681 gttgtactgg acaagaggac ccaaccatga agaccccagt gagaccatga taccacacgc
4741 acaaagacct gtgcagctca tggcactact aggagagtcc tccctacatg gaccctcatt
4801 ttacagcaag gttagcaaat tagtaatatc tgaacttaaa gagggaggaa tggattttta
4861 tgtgcccaga caagagtcaa tgttcagatg gatgaggttc tcagatctaa gcacatggga
4921 gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgaat gacgccgctc
4981 catctaatga tggtgctgct ggtctcgtac cagagggcaa caacgagacc cttcccctag
5041 aaccagttgc gggcgcagct atagccgcac ccgtcactgg ccaaaataat ataattgacc
5101 cctggattag aacaaatttt gtgcaagcac caaatggaga gttcacagtg tcacccagaa
5161 actctcctgg agaaatttta ttaaatttag agttgggccc tgatttgaac ccttatttgg
5221 ctcatttgtc aaggatgtac aatgggtatg ctggtggagt ggaagttcag gttctcctgg
5281 cagggaacgc gttcactgcc ggaaagatcc tcttcgccgc cgtcccgcca aatttcccag
5341 tggaattctt aagcccagcc cagatcacaa tgctaccaca tttaatagta gatgttagga
5401 ctcttgagcc aattatgatc ccactccctg acgttaggaa tacattcttc cattatagta
5461 accagcctaa cagccgcatg agattagtgg ctatgctcta taccccactc agatctaatg
5521 gttcaggtga tgatgtcttt actgtctctt gcagggtttt gactaggcct actcctgatt
5581 ttgagttcac ttatttagtg ccaccttctg ttgaatccaa aactaaacct ttttccttac
5641 ctattttaac cctttctgag ctcacaaatt cgaggtttcc agtccccatc gattcgcttt
5701 ttaccgccca gaataatgtg ttgcaggtgc agtgtcaaaa tggcaggtgt acacttgatg
5761 gcgagttaca aggcacaacc cagttgctcc cagctggcat ctgcgcattc agaggacggg
5821 tgacagcaca aattaaccaa cgtgacaggt ggcacatgca actgcaaaac ctcaatggca
5881 caacatatga cccaactgat gatgtgccag ccccgctggg tacacctgac ttcaagggcg
5941 tcgtgtttgg gatggtaagc caaagaaatg tgggtaatga tgcgcctggc tcaaccagag
6001 cccaacaggc gtggatttca acctatagcc cccaatttgt ccccaaatta ggttctgtca
6061 atctcagaat tagtaataat gatgatttcc aattccagcc gacaaaattc acaccagtgg
6121 gcgtcaatga tgacgatgat gaccacccgt tcagacagtg ggaactacca aactattcag
6181 gggagcttac cttgaatatg aatcttgccc ccccagttgc tccaaatttt cctggtgaac
6241 aactgttatt cttcagatct ttcgtgccat gctcaggagg ttacaaccaa ggtattatag
6301 attgtcttat tccccaagaa tggatccaac atttctacca ggaatcagca ccctcccagt
6361 cagacgtggc cctaatcagg tatgtcaacc ccgatacggg acgtacactg tttgaagcaa
6421 aattacacag atctggttac attactgtgg ctcactctgg agactatcct cttgttgttc
6481 cggctaatgg acactttaga tttgattctt gggtaaatca gttttactca ctcgccccaa
6541 tgggaactgg gaatgggcga aggagggctc agtaatggct ggggctttca ttgcaggatt
6601 ggcaggcgac atgctcacgt catctgtggg ctcccttgtg aacgcagggg caaacgccat
6661 caaccaaaag atagactttg aaaataacaa acaactccag tctgcttcct ttcagcatga
6721 taaagagatg ctccaagcgc aggtgagggc aaccaagcag ctgcaatctg aaatgatagc
6781 cctaaaacag ggggttttgg ccgcaggcgg cttttccccc actgatgcag cacggggatc
6841 cattggtgca cccatgacaa aggtgcttga ctggtctggc actcgatact gggcgcccaa
6901 ttcca
//