Typing tool
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Typing tool
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Complete norovirus genomes
| PX700455 | GII.17 | |
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| GII.P17 |
ORF1: 1..4994
ORF2: 4975..6591
ORF3: 6591..7277
LOCUS PX700455 7277 bp RNA linear VRL 04-MAR-2026
DEFINITION Norovirus GII isolate 2414YC11 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION PX700455
VERSION PX700455.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7277)
AUTHORS Jin,m., yin,a. and yang,s.
TITLE Direct Submission
JOURNAL Submitted (15-DEC-2025) National Key Laboratory of Infectious
Disease Source Tracing, Early Warning and Intelligent
Decision-making, Institute of Viral Disease Control and Prevention,
China CDC, No. 155, Changbai Road, Changping District, Beijing
102206, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7277
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2414YC11"
/isolation_source="anal swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Beijing,Changping"
/collection_date="Dec-2024"
/note="genotype: GII.17[P17]"
gene <1..4994
/gene="ORF1"
CDS <1..4994
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="YCB08084.1"
/translation="ALGARSKQPPPGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPK
VTYKVGEGVSGLPDLTTVAQPDAQNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIY
HYGLYVERGHVLGVHKPPAAISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETF
PYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKA
ANAVLCALSSLFTRPIKDVIGKLKPLNIMNILATCDWTFAGIVESMILLAELFGVFWT
PPDVSAIIAPLLGDYEMQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLR
ACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDK
DALATYMRTLDLEEEKARKLSSKSASPDIVGTVNALLARIAAARSLVHKAKEELSSRQ
RPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLW
DDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYV
NFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKS
GNTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAA
ENKYGLMDTLRVGNQLKSVKTLDELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVV
EKVQNATVQTNNELAGALHHLRSARIRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMN
ISNLWSKPPVEEGDEPEDKGGCPKPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAF
SSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKI
RQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFE
APPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRL
RFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGG
QMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGS
EGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDP
RVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQA
CASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKD
ELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDG
PIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPS
VVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFY
GDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDP
AGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSK
VSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..884
/gene="ORF1"
/product="p48"
mat_peptide 885..1982
/gene="ORF1"
/product="NTPase"
mat_peptide 1983..2519
/gene="ORF1"
/product="p22"
mat_peptide 2520..2918
/gene="ORF1"
/product="VPg"
mat_peptide 2919..3461
/gene="ORF1"
/product="Pro"
mat_peptide 3462..4991
/gene="ORF1"
/product="RdRp"
gene 4975..6591
/gene="ORF2"
CDS 4975..6591
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YCB08085.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6591..>7277
/gene="ORF3"
CDS 6591..>7277
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YCB08086.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSPSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVP"
ORIGIN
1 aagccctcgg ggcgcggtct aagcagccgc ccccgggaga aacaaaacaa acactaagac
61 caccaaggcc gccgacaccg gaattggtga agaagatacc cccacccccc cccaatggcg
121 aggatgaacc aaaggtaacg tataaggtgg gagaaggtgt gtctgggctg cccgacttaa
181 caaccgtggc acaacctgac gcacagaaca cagcctatag tgtcccccca cttagccaga
241 gagaggtcgg cgaagctaga gaaccgttgc ctggctccat tctggaaatg tgggatggtg
301 agatctacca ctatgggctg tatgttgagc gggggcatgt gctgggagtg cacaaaccac
361 ctgctgcaat aagccttgcc aaaattgagt taacaccgct gtctctctac tggagagtgg
421 tctacactcc ccagtacttg atagctccag agaccctcaa gaatttaaat ggagagactt
481 tcccatacac ggcctttgac aacaactgtt atgccttctg ttgttgggtt ctagacctca
541 acgactcctg gcttagcaga agaatggtcc aaagaacaac cggattcttc agaccgtatc
601 aggactggaa cagaaaaccc ttaccaacca tggatgaacc aaaaatcaag aaggccgcga
661 atgctgttct gtgtgctctc tcctcactct tcactaggcc catcaaagat gtcattggaa
721 agcttaaacc actaaacatt atgaacatac tggcaacttg tgattggact tttgcgggca
781 tagtggaatc catgatcctt cttgctgaac tctttggggt gttctggacg cccccagatg
841 tgtctgcaat aattgctccc ttactcggtg actacgagat gcaaggcccc gaagacctgg
901 ccgtggaact tgtgcccgtg gtaatgggag gaataggttt ggtgttagga ttcaccaagg
961 aaaagatcgg caagatgctt tcatcagctg caaccacact cagggcctgt aaggatctag
1021 gatcttatgg gttggagata ctcaaactgg tcatgaagtg gttcttcccc aagaaggagg
1081 aggccaacga gttagccatg gtgagggcca ttgaggatgc agttctggat ttggaggcaa
1141 tagaaaacaa ccacatgacc actctcctta aggacaaaga cgccctggcc acatacatga
1201 ggactcttga cttggaagaa gaaaaagcaa ggaaactatc ttccaaatcg gcgtcacctg
1261 acatcgtggg cacagtaaac gcactattgg caagaatagc agccgccagg tcactggtcc
1321 acaaggctaa ggaggagctc tcgagcagac agagacctgt tgttgtaatg atatcaggta
1381 ggccaggtat aggaaagacc catctggcca gagagctagc caagaaggtt gcgtcaacac
1441 tgtcaggcga ccaaaggatt ggactgatac ccagaaatgg cgtcgaccat tgggacgcct
1501 acaaaggaga gcgggtggtt ctgtgggatg actatggcat gagcaaccct atacaggacg
1561 cactgaggct ccaagaattg gctgacacct gtcctctgac cctaaattgt gacagaattg
1621 aaaacaaagg aaaagtgttc gacagcgacg ccataatcat aacgaccaac cttgcaaacc
1681 cagcaccatt ggattatgtc aactttgagg cttgttccag acgcatagac ttcttggtgt
1741 atgcagacgc acctgacatc gagaaggcta agcgtgactt tcctggccaa ccagatatgt
1801 ggaaagacca ttacagacca gacttctcac acattaaact tcagctcgca ccacagggag
1861 gctttgataa gagtggcaac accccacatg gcaaaggcgt ggttaagtct ctgacgattg
1921 gctctctgat cgccagggct tctggcttgc tccatgagag aatggatgaa ttcgagctcc
1981 aaggccccaa cttaccaacc ttcaatttcg accgtaacaa agtcgccgcc ttcagacaat
2041 tggcagctga aaacaaatac ggtcttatgg acacactgag ggtcggcaac caactgaaaa
2101 gtgtcaaaac cctggatgag ctgaagcagg ccataaagaa catcactatc aagaagtgcc
2161 agatagtgta caatggatgc acctacacca tggaatctga tgggaggaac aaggttgtgg
2221 ttgaaaaggt tcaaaatgca acagtccaaa ccaacaatga acttgcagga gcactccacc
2281 acctgagatc tgcaagaata aggtattatg tcaaatgttt ccaagaagct atttactcta
2341 tactccaaat tgctggtgca gccttcgtca ccacacgcat cgtgaggcgc atgaacatct
2401 caaacctctg gtcgaagcca cccgtcgaag agggtgatga gcctgaagac aaaggggggt
2461 gccccaagcc cagggatgaa gatgacctca ctattgactc caaagacatt aaagcagaag
2521 gtaagaaggg caagaacaaa tctggccggg gcaagaaaca cacagctttc tcatccaagg
2581 gcctcagtga tgaagagtac gatgagtaca agagaatcag ggaggagaga aatggcaagt
2641 actcaataga agaatacctc caggataggg atagatacta tgaagagctt gccattgcta
2701 aggccactga ggaagacttc tgtgaagagg aggaaatcaa aattcgccag agaatcttcc
2761 ggcccaccag gaagcagcgg aaagaggaaa gagccacgct tgggctcgtc acaggatcgg
2821 aaatcagaaa gaggaaccca gatgatttta agccaaaagg aaaattgtgg gctgatgaca
2881 acaggagtgt ggactacaat gagaggatag attttgaggc tcccccaagt gtttggtcta
2941 ggatagtcaa ctttggtaca ggatggggat tctgggtctc cccaagtctc tttataactt
3001 caacacatgt cataccaaaa ggaattactg aggcctttgg agttcccatt aaccaaattc
3061 aaattcacaa atctggagag ttttgccgct tgcggtttcc aaaaccaatc aggccagacg
3121 tgagtggaat gatcttggaa gagggtgccc ctgaaggcac tgttgtttcc attctcatca
3181 agaggacgac aggggaactg atgcctctcg cagtcagaat gggaactcat gccacaatga
3241 aaatccaagg tagaacggtg ggcggtcaaa tgggcatgct tctcactggc tcaaacgcca
3301 aaagcatgga cctaggcaca acaccaggtg actgtgggtg cccatacata tacaaaaggg
3361 gcaatgactt cgtggtcatt ggggtgcaca ctgcagcagc ccgtggaggt aacacggtca
3421 tatgtgccac acaggggagt gaaggcgaag ccaccctcga aggaggtgac aacaagggca
3481 cctattgtgg agcccccatc ttgggtcctg gcaacgcacc aaaattgagc acaaaaacaa
3541 aattctggag atcttctaac gcgccgctcc cgccaggcac ctacgaacca gcataccttg
3601 gtggaaaaga cccgcgtgtg aagggaggcc catctctaca acaggttatg agagaccaac
3661 tcaaaccttt tacagagccc agagggaagc caccaaaacc aagtgtccta gaatcagcaa
3721 agaagaccat cattaatgtt ctggaacaaa ccattgaccc ccctgaaaag tggtcatatg
3781 cccaagcttg tgcatccctc gacaagacaa cctccagtgg atacccgcat cacgtccgga
3841 agaatgacta ctggagtggt gaatccttca cggggaaact tgcagaccag gcctcaaaag
3901 caaatctcat gtatgaggaa ggtaagcaca tgcaaccagt ttacaccgca gcactcaaag
3961 acgagctcgt gaaaactgac aaaatttatg gcaagatcaa gaaaagactc ctgtggggct
4021 ctgacctatc caccatgatt cgatgcgcca gggcatttgg tggcctcatg gacgagctca
4081 aagcaaattg tatcacactc cctatcagag ttggtatgaa catgaatgaa gatggtccca
4141 taatatttga aaagcactcc aggtacaggt accactatga tgctgattat tcccgctggg
4201 attccacaca acagcgggca gtgctggaag cggcacttga aatcatggtg agattttctg
4261 ctgagccaca gttggcacaa atagtggcag aggacctgct atcaccaagt gtggttgatg
4321 tgggcgattt caaaattact attaatgaag gcctaccatc tggcgtgcct tgcacttcac
4381 aatggaattc tattgcccac tggttactca ccctatgtgc cctgtctgaa gtgacaggac
4441 taggccctga catcatacaa gccaactcca tgtactcttt ctatggtgat gatgagattg
4501 tgagcacaga cataaaatta gacccagaga aattgactgc aaaactcaaa gaatatggtc
4561 ttaaacccac ccggcctgac aagactgagg ggccactggt aattagtgag gacctgaatg
4621 ggttgacttt cctccgccga acagtcaccc gcgatccagc gggttggttt ggaaagttgg
4681 accaaaactc catcctcaga cagctgtact ggacaagggg acccaaccat gaagacccca
4741 gtgagactat gataccacac gcacagagac ctgtgcagct catggcattg ctaggagaat
4801 cctccctaca tggaccctca ttttacagca aggttagcaa actggttata tctgaactta
4861 aagagggagg aatggatttc tatgtgccca ggcaagagtc aatgttcagg tggatgaggt
4921 tctcagatct aagcacatgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag
4981 atggcgtcga atgacgccgc tccatctaat gatggtgctg ctggtctcgt accagagggc
5041 aataacgaga cccttcccct agaaccagtt gcgggcgcag ccatagccgc acccgtcact
5101 ggccaaaata atataattga cccctggatt agaacaaatt ttgtgcaagc accaaatgga
5161 gagttcacag tgtcacccag aaactctcct ggagaaattt tactaaacct agagttgggc
5221 cctgatctga acccttattt ggctcatttg tcaaggatgt ataatggata tgctggtgga
5281 gttgaagtcc aggttctcct ggcagggaac gcgttcactg ccgggaagat cctcttcgcc
5341 gctgtcccgc caaattttcc ggtggaattc ttaagcccag cccagattac aatgctccca
5401 catataatag tagatgttag gactcttgaa ccaattatga tcccattacc tgatgttagg
5461 aatacattct tccactataa taatcagccc aacagccgca tgagattagt ggctatgctc
5521 tacacccctc ttagatctaa tggctcaggt gatgatgttt tcactgtttc ttgcagggtt
5581 ttgactaggc ctactcctga ttttgagttc acttatctag tgccaccctc tgttgaatct
5641 aagactaaac ccttttcttt acccattcta accctttctg agctcacaaa ttcgaggttc
5701 ccggtcccca tcgattcgct tttcaccgcc caaaataatg ttttgcaggt gcagtgtcaa
5761 aatggcaggt gcacacttga cggtgagcta caaggcacaa cccagttgct cccatctggc
5821 atctgtgcgt tcagggggcg ggtgacagca gaaactgaca atcctgacaa gtggcacatg
5881 caactgcaaa accttaatgg cacaacatat gacccaactg atgatgtgcc agccccactg
5941 ggtacacctg acttcaaggg cgtcgtgttt gggatggcaa gccaaagaaa tgtgggtaac
6001 gacgcgcccg gctcaaccag gtcccatgag gcggtgattt caacctacag ccccagattt
6061 gttcctaaat taggctctgt caatttcaaa agcaatgatg atgatttcca attgcagcca
6121 acaagattca caccagtggg cattaatgat gatggcaacc aaccatttag acaatgggaa
6181 ctaccagatt attcaggagt gcttaccttg aatatgaacc ttgccccccc tgttgctcca
6241 aatttccctg gcgaacaatt actattcttc agatcttctg tgccatgttc aggaggttac
6301 aaccaaggta ttatagattg ccttatcccc caagaatgga tccaacactt ctaccaggaa
6361 tcagcacctt ctcagtcaga agtggcccta atcaggtacg tcaaccccga cacgggtcgt
6421 acactgtttg aggcaaaatt gcataggtca ggctatatca ctgtggctca ttctggagat
6481 tatcctcttg ttgttccggc taatggatac tttagatttg actcttgggt aaatcagttt
6541 tactcactcg ccccaatggg aactgggaat gggcgaagga gggctcagta atggctggag
6601 ctttcattgc aggattggcg ggtgacatgc tcacgtcatc cgtgggctcc ctggtgaacg
6661 caggggcaaa cgccatcaac caaaagatag actttgaaaa caacaaacaa ctccagtctg
6721 cttcctttca acatgataaa gagatgctcc aagcgcaggt gaacgcaacc aagcagctgc
6781 aatctgagat gatagcccta aaacaggggg ttttggccgc aggcggcttt tcccccactg
6841 atgcagcgag gggggccatc ggtgcaccca tgacaaaggt gcttgactgg tctggcactc
6901 gatactgggc tcccaattcc acaaagacaa ctggttattc ggggcaattc acctcttcac
6961 ctgtgcacat gcccagcccg agtgtcccac aatcaaaacc cgcaaagccc aagtctctag
7021 gttctccttc ttcttctagt agtgtttaca gtatgtctac ccaattaact tctctaacat
7081 ctggctcttc tagtaatgct tcttctgctt ctacaaaatt gacaaatttg agctccggct
7141 cttctcaaaa cagaacagca gagtgggtga accaacagag aagtctcagc cctttcatga
7201 gtggcgcact caatatctcg catgtcacgc caccttcaag tagggcctcc agttctggga
7261 cggtctcaac cgtgccc
//