Typing tool
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Typing tool
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Complete norovirus genomes
| PX700454 | GII.17 | |
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| GII.P17 |
ORF1: 1..5009
ORF2: 4990..6606
ORF3: 6606..7345
LOCUS PX700454 7345 bp RNA linear VRL 04-MAR-2026
DEFINITION Norovirus GII isolate 2414YC08 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION PX700454
VERSION PX700454.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7345)
AUTHORS Jin,m., yin,a. and yang,s.
TITLE Direct Submission
JOURNAL Submitted (15-DEC-2025) National Key Laboratory of Infectious
Disease Source Tracing, Early Warning and Intelligent
Decision-making, Institute of Viral Disease Control and Prevention,
China CDC, No. 155, Changbai Road, Changping District, Beijing
102206, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7345
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2414YC08"
/isolation_source="anal swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Beijing,Changping"
/collection_date="Dec-2024"
/note="genotype: GII.17[P17]"
gene <1..5009
/gene="ORF1"
CDS <1..5009
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="YCB08081.1"
/translation="VTFKKALGARSKQPPPGETKQTLRPPRPPTPELVKKIPPPPPNG
EDEPKVTYKVGEGVSGLPDLTTVAQPDAQNTAYSVPPLSQREVGEAREPLPGSILEMW
DGEIYHYGLYVERGHVLGVHKPPAAISLAKIELTPLSLYWRVVYTPQYLIAPETLKNL
NGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFRPYQDWNRKPLPTMDEP
KIKKAANAVLCALSSLFTRPIKDVIGKLKPLNIMNILATCDWTFAGIVESMILLAELF
GVFWTPPDVSAIIAPLLGDYEMQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSA
ATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAIENNHMTT
LLKDKDALATYMRTLDLEEEKARKLSSKSASPDIVGTVNALLARIAAARSLVHKAKEE
LSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGE
RVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLANPA
PLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHYRPDFSHIKLQLAPQG
GFDKSGNTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQGPNLPTFNFDRNKVAAF
RQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNITIKKCQIVYNGCTYTMESDGR
NKVVVEKVQNATVQTNNELAGALHHLRSARIRYYVKCFQEAIYSILQIAGAAFVTTRI
VRRMNISNLWSKPPVEEDDEPEDKGGCPKPRDEDDLTIDSKDIKAEGKKGKNKSGRGK
KHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEE
EEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNE
RIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITEAFGVPINQIQIHKSG
EFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMPLAVRMGTHATMKIQG
RTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDFVVIGVHTAAARGGNTVIC
ATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYL
GGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLESAKKTIINVLEQTIDPPEKW
SYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYT
AALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDELKANCITLPIRVGMN
MNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAGD
LLSPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANS
MYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRT
VTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGP
SFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE
"
mat_peptide <1..899
/gene="ORF1"
/product="p48"
mat_peptide 900..1997
/gene="ORF1"
/product="NTPase"
mat_peptide 1998..2534
/gene="ORF1"
/product="p22"
mat_peptide 2535..2933
/gene="ORF1"
/product="VPg"
mat_peptide 2934..3476
/gene="ORF1"
/product="Pro"
mat_peptide 3477..5006
/gene="ORF1"
/product="RdRp"
gene 4990..6606
/gene="ORF2"
CDS 4990..6606
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YCB08082.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVIGQ
NNIIDPWIRTNFVQAPNGEFPVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLMAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAEADNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6606..>7345
/gene="ORF3"
CDS 6606..>7345
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YCB08083.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLISGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPL"
ORIGIN
1 ctgttacttt taagaaagcc ctcggggcgc ggtctaagca gccgcccccg ggagaaacaa
61 aacaaacact aagaccacca aggccgccga caccggaatt ggtgaagaag atacccccac
121 ccccccccaa tggcgaggat gaaccaaagg taacgtataa ggtgggagaa ggtgtgtctg
181 ggctgcccga cttaacaacc gtggcacaac ctgacgcaca gaacacagcc tatagtgtcc
241 ccccacttag ccagagagag gtcggcgaag ctagagaacc gttgcctggc tccattctgg
301 aaatgtggga tggtgagatc taccactatg ggctgtatgt tgagcggggg catgtgctgg
361 gagtgcacaa accacctgct gcaataagcc ttgccaaaat tgagttaaca ccgctgtctc
421 tctactggag agtggtctac actccccagt acttgatagc tccagagacc ctcaagaatt
481 taaatggaga gactttccca tacacggcct ttgacaacaa ctgttatgcc ttctgttgtt
541 gggttctaga cctcaacgac tcctggctta gcagaagaat ggtccaaaga acaaccggat
601 tcttcagacc gtatcaggac tggaacagaa aacccttacc aaccatggat gaaccaaaaa
661 tcaagaaggc cgcgaatgct gttctgtgtg ctctctcctc actcttcact aggcccatca
721 aagatgtcat tggaaagctt aaaccactaa acattatgaa catactggca acttgtgatt
781 ggacttttgc gggcatagtg gaatccatga tccttcttgc tgaactcttt ggggtgttct
841 ggacgccccc agatgtgtct gcaataattg ctcccttact cggtgactac gagatgcaag
901 gccccgaaga cctggccgtg gaacttgtgc ccgtggtaat gggaggaata ggtttggtgt
961 taggattcac caaggaaaag atcggcaaga tgctttcatc agctgcaacc acactcaggg
1021 cctgtaagga tctaggatct tatgggttgg agatactcaa actggtcatg aagtggttct
1081 tccccaagaa ggaggaggcc aacgagttag ccatggtgag ggccattgag gatgcagttc
1141 tggatttgga ggcaatagaa aacaaccaca tgaccactct ccttaaggac aaagacgccc
1201 tggccacata catgaggact cttgacttgg aagaagaaaa agcaaggaaa ctatcttcca
1261 aatcggcgtc acctgacatc gtgggcacag taaacgcatt attggcaaga atagcagccg
1321 ccaggtcact ggtccacaag gctaaggagg agctctcgag cagacagaga cctgttgttg
1381 ttatgatatc aggtaggcca ggtataggaa agacccatct ggccagagag ctagccaaga
1441 aggttgcgtc aacactgtca ggcgaccaaa ggattggact gatacccaga aatggcgtcg
1501 accattggga cgcctacaaa ggagagcggg tggttctgtg ggatgactat ggcatgagca
1561 accctataca ggacgcactg aggctccaag aattggctga cacctgtcct ctgaccctaa
1621 attgtgacag aattgaaaac aaaggaaaag tgttcgacag tgacgccata atcataacga
1681 ccaaccttgc aaacccagca ccattggatt atgtcaactt tgaggcttgt tccagacgca
1741 tagacttctt ggtgtatgca gacgcacctg acatcgagaa ggctaagcgt gactttcctg
1801 gccaaccaga tatgtggaaa gaccattaca gaccagactt ttcacacatt aaacttcagc
1861 tcgcaccaca gggaggcttt gataagagtg gcaacacccc acatggcaaa ggcgtggtta
1921 agtctctgac gattggctct ctgatcgcca gggcttctgg cttgctccat gagagaatgg
1981 atgaattcga gctccaaggc cccaacttac caaccttcaa tttcgaccgt aacaaagtcg
2041 ccgccttcag acaattggca gctgaaaaca aatacggtct tatggacaca ctgagagtcg
2101 gcaaccaact gaaaagtgtc aaaaccctgg atgagctgaa gcaggccata aagaacatca
2161 ccatcaagaa gtgccagata gtgtacaatg gatgcaccta caccatggaa tctgatggga
2221 ggaacaaggt tgtggttgaa aaggttcaaa atgcaacagt ccaaaccaac aatgaacttg
2281 caggagcact ccaccacctg agatctgcaa gaataaggta ttatgtcaaa tgtttccaag
2341 aagctattta ctctatactc caaattgctg gtgcagcctt cgtcaccaca cgcatcgtga
2401 ggcgcatgaa catctcaaac ctctggtcga agccacccgt cgaagaggat gatgagcctg
2461 aagacaaagg ggggtgcccc aagcccaggg atgaagatga cctcactatt gactccaaag
2521 acattaaagc agaaggtaag aagggcaaga acaaatctgg ccggggcaag aaacacacag
2581 ctttctcatc caagggcctc agtgatgaag agtacgatga gtacaagaga atcagggagg
2641 agagaaatgg caagtactca atagaagaat acctccagga tagggataga tactatgaag
2701 agcttgccat tgctaaggcc actgaggaag acttctgtga agaggaggaa atcaaaattc
2761 gccagagaat cttccggccc actaggaagc agcggaaaga ggaaagagcc acgcttgggc
2821 tcgtcacagg atcggaaatc agaaagagga acccagatga ttttaagcca aaaggaaaat
2881 tgtgggctga tgacaacagg agtgtggact acaatgagag gatagatttt gaggctcccc
2941 caagtgtttg gtctaggata gtcaactttg gtacaggatg gggattctgg gtctccccaa
3001 gtctctttat aacttcaaca catgtcatac caaaaggaat tactgaggcc tttggagttc
3061 ccattaacca aattcaaatt cacaaatctg gagagttttg ccgcttgcgg tttccaaaac
3121 caatcaggcc agacgtgagt ggaatgatct tggaagaggg tgcccctgaa ggcactgttg
3181 tttccattct catcaagagg acgacagggg aactgatgcc tctcgcagtc agaatgggaa
3241 ctcatgccac aatgaaaatc caaggtagaa cggtgggcgg tcaaatgggc atgcttctca
3301 ctggctcaaa cgccaaaagc atggacctag gcacaacacc aggtgactgt gggtgcccat
3361 acatatacaa aaggggcaat gacttcgtgg tcattggggt gcacactgca gcagcccgtg
3421 gaggtaacac ggtcatatgt gccacacagg ggagtgaagg cgaagccacc ctcgaaggag
3481 gtgacaacaa gggcacctat tgtggagccc ccatcttggg tcctggcaat gcaccaaaat
3541 tgagcacaaa aacaaaattc tggagatctt ctaacgcgcc gctcccgcca ggcacctacg
3601 aaccagcata ccttggtgga aaagacccgc gtgtgaaggg aggcccatct ctacaacagg
3661 ttatgagaga ccaactcaaa ccttttacag agcccagagg gaagccacca aaaccaagtg
3721 tcctagaatc agcaaagaag accatcatta atgttctgga acaaaccatt gacccccctg
3781 aaaagtggtc atatgcccaa gcttgtgcat ccctcgacaa gacaacctcc agtggatacc
3841 cgcatcacgt ccggaagaat gactactgga gtggtgaatc cttcacgggg aaacttgcag
3901 accaggcctc aaaagcaaat ctcatgtatg aggaaggtaa gcacatgcaa ccagtttaca
3961 ccgcagcact caaagacgag ctcgtgaaaa ctgacaaaat ttatggcaag atcaagaaaa
4021 gactcctgtg gggctctgac ctatccacca tgattcgatg cgccagggca tttggtggcc
4081 tcatggacga gctcaaagca aattgtatca cactccctat cagagttggt atgaacatga
4141 atgaagatgg tcccataata tttgaaaagc actccaggta caggtaccac tatgatgctg
4201 attattcccg ctgggattcc acacaacagc gggcagtgct ggaagcggca cttgaaatca
4261 tggtgagatt ttctgctgag ccacagttgg cacaaatagt ggcaggggac ctgctatcac
4321 caagtgtggt tgatgtgggc gatttcaaaa ttactattaa tgaaggccta ccatctggcg
4381 tgccttgcac ttcacaatgg aattctattg cccactggtt actcacccta tgtgccctgt
4441 ctgaagtgac aggactaggc cctgacatca tacaagccaa ctccatgtac tctttctatg
4501 gtgatgatga gattgtgagc acagacataa aattagaccc agagaaattg actgcaaaac
4561 tcaaagaata tggtcttaaa cccacccggc ctgacaagac tgaggggcca ctggtaatta
4621 gtgaggacct gaatgggttg actttcctcc gccgaacagt cacccgcgat ccagcgggtt
4681 ggtttggaaa gttggaccaa aactccatcc tcagacagct gtactggaca aggggaccca
4741 accatgaaga ccccagtgag actatgatac cacacgcaca gagacctgtg cagctcatgg
4801 cattgctagg agaatcctcc ctacatggac cctcatttta cagcaaggtt agcaaactgg
4861 ttatatctga acttaaagag ggaggaatgg atttttatgt gcccagacaa gagtcaatgt
4921 tcaggtggat gaggttctca gatctaagca catgggaggg cgatcgcaat ctggctccca
4981 gttttgtgaa tgaagatggc gtcgaatgac gccgctccat ctaatgatgg tgctgctggt
5041 ctcgtaccag agggcaataa cgagaccctt cccctagaac cagttgcggg cgcagccata
5101 gccgcacccg tcattggcca aaataatata attgacccct ggattagaac aaattttgtg
5161 caagcaccaa atggagagtt cccagtgtca cccagaaact ctcctggaga aattttacta
5221 aacctagagt tgggccctga tctgaaccct tatttggctc atttgtcaag gatgtataat
5281 ggatatgctg gtggagttga agtccaggtt ctcatggcag ggaacgcgtt cactgccggg
5341 aagatcctct tcgccgctgt cccgccaaat tttccggtgg aattcttaag cccagcccag
5401 attacaatgc tcccacatat aatagtagat gttaggactc ttgaaccaat tatgatccca
5461 ttacctgatg ttaggaatac attcttccac tataataatc agcccaacag ccgcatgaga
5521 ttagtggcta tgctctacac cccccttaga tctaatggct caggtgatga tgttttcact
5581 gtttcttgca gggttttgac taggcctacc cctgattttg agttcactta tctagtgcca
5641 ccctctgtcg aatctaagac taaacccttt tctttaccca ttctaaccct ttctgagctc
5701 acaaattcga ggttcccggt ccccatcgat tcgcttttca ccgcccaaaa taatgttttg
5761 caggtgcagt gtcaaaatgg caggtgcaca cttgacggtg agctacaagg cacaacccag
5821 ttgctcccat ctggcatctg tgcgttcagg gggcgggtga cagcagaagc tgacaatcct
5881 gacaagtggc acatgcaact gcaaaacctt aatggcacaa catatgaccc aactgatgat
5941 gtgccagccc cactgggtac acctgacttc aagggcgtcg tgtttgggat ggcaagccaa
6001 agaaatgtgg gtaacgacgc gcccggctca accaggtccc atgaggcggt gatttcaacc
6061 tacagcccca gatttgttcc taaattaggc tctgtcaatt tcaaaagcaa tgatgatgat
6121 ttccaattgc agccaacaag attcacacca gtgggcatta atgatgatgg caaccaacca
6181 ttcagacaat gggaattacc agattattca ggagtgctta ccttgaatat gaaccttgcc
6241 ccccctgttg ctccaaattt ccctggcgaa caattactat tcttcagatc ttctgtgcca
6301 tgttcaggag gttacaacca aggtattata gattgcctta tcccccaaga atggatccaa
6361 cacttctacc aggaatcagc accttctcag tcagaagtgg ccctaatcag gtacgtcaac
6421 cccgacacgg gtcgtacact gtttgaggca aaattgcata ggtcaggcta tatcactgtg
6481 gctcattctg gagactatcc tcttgttgtt ccggctaatg gatactttag atttgactct
6541 tgggtaaatc agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct
6601 cagtaatggc tggagctttc attgcaggat tggcgggtga catgctcacg tcatccgtgg
6661 gctccctggt gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca
6721 aacaactcca gtctgcttcc tttcaacatg ataaagagat gctccaagcg caggtgaacg
6781 caaccaagca gctgcaatct gagatgatag ccctaaaaca gggggttttg gccgcaggcg
6841 gcttttcccc cactgatgca gcgagggggg ccatcggtgc acccatgaca aaggtgcttg
6901 actggtctgg cactcgatac tgggctccca attccacaaa gacaactggt tattcggggc
6961 aattcacctc ttcacctgtg cacatgccca gcccgagtgt cccacaatca aaacccgcaa
7021 agcccaagtc tctaggttct tcttcttctt ctagtagtgt ttacagtatg tctacccaat
7081 taacttctct aatatctggc tcttctagta atgcttcttc tgcttctaca aaattgacaa
7141 atttgagctc cggctcttct caaaacagaa cagcagagtg ggtgaaccaa cagagaagtc
7201 tcagcccttt catgagtggc gcactcaata tctcgcatgt cacgccacct tcaagcaggg
7261 cctccagttc tgggacggtc tcaaccgtgc ccaaggaagt tttggactcc tggacatctg
7321 cattcaacac acacagacag ccgct
//