Typing tool
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Typing tool
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Complete norovirus genomes
| PX700452 | GII.17 | |
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| GII.P17 |
ORF1: 1..4990
ORF2: 4971..6587
ORF3: 6587..7317
LOCUS PX700452 7317 bp RNA linear VRL 04-MAR-2026
DEFINITION Norovirus GII isolate 2414YC06 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION PX700452
VERSION PX700452.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7317)
AUTHORS Jin,m., yin,a. and yang,s.
TITLE Direct Submission
JOURNAL Submitted (15-DEC-2025) National Key Laboratory of Infectious
Disease Source Tracing, Early Warning and Intelligent
Decision-making, Institute of Viral Disease Control and Prevention,
China CDC, No. 155, Changbai Road, Changping District, Beijing
102206, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7317
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2414YC06"
/isolation_source="anal swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Beijing,Changping"
/collection_date="Dec-2024"
/note="genotype: GII.17[P17]"
gene <1..4990
/gene="ORF1"
CDS <1..4990
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="YCB08075.1"
/translation="LGARSKQPPPGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKV
TYKVGEGVSGLPDLTTVAQPDAQNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYH
YGLYVERGHVLGVHKPPAAISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFP
YTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAA
NAVLCALSSLFTRPIKDVIGKLKPLNIMNILATCDWTFAGIVESMILLAELFGVFWTP
PDVSAIIAPLLGDYEMQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRA
CKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKD
ALATYMRTLDLEEEKARKLSSKSASPDIVGTVNALLARIAAARSLVHKAKEELSSRQR
PVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWD
DYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVN
FEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSG
NTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAE
NKYGLMDTLRVGNQLKSVKTLDELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVE
KVQNATVQTNNELAGALHHLRSARIRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNI
SNLWSKPPVEEGDEPEDKGGCPKPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFS
SKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIR
QRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEA
PPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLR
FPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQ
MGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSE
GEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPR
VKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQAC
ASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDE
LVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGP
IIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSV
VDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYG
DDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPA
GWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKV
SKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..880
/gene="ORF1"
/product="p48"
mat_peptide 881..1978
/gene="ORF1"
/product="NTPase"
mat_peptide 1979..2515
/gene="ORF1"
/product="p22"
mat_peptide 2516..2914
/gene="ORF1"
/product="VPg"
mat_peptide 2915..3457
/gene="ORF1"
/product="Pro"
mat_peptide 3458..4987
/gene="ORF1"
/product="RdRp"
gene 4971..6587
/gene="ORF2"
CDS 4971..6587
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YCB08076.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6587..>7317
/gene="ORF3"
CDS 6587..>7317
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YCB08077.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSPSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTH"
ORIGIN
1 cctcggggcg cggtctaagc agccgccccc gggagaaaca aaacaaacac taagaccacc
61 aaggccgccg acaccggaat tggtgaagaa gataccccca ccccccccca atggcgagga
121 tgaaccaaag gtaacgtata aggtgggaga aggtgtgtct gggctgcccg acttaacaac
181 cgtggcacaa cctgacgcac agaacacagc ctatagtgtc cccccactta gccagagaga
241 ggtcggcgaa gctagagaac cgttgcctgg ctccattctg gaaatgtggg atggtgagat
301 ctaccactat gggctgtatg ttgagcgggg gcatgtgctg ggagtgcaca aaccacctgc
361 tgcaataagc cttgccaaaa ttgagttaac accgctgtct ctctactgga gagtggtcta
421 cactccccag tacttgatag ctccagagac cctcaagaat ttaaatggag agactttccc
481 atacacggcc tttgacaaca actgttatgc cttctgttgt tgggttctag acctcaacga
541 ctcctggctt agcagaagaa tggtccaaag aacaaccgga ttcttcagac cgtatcagga
601 ctggaacaga aaacccttac caaccatgga tgaaccaaaa atcaagaagg ccgcgaatgc
661 tgttctgtgt gctctctcct cactcttcac taggcccatc aaagatgtca ttggaaagct
721 taaaccacta aacattatga acatactggc aacttgtgat tggacttttg cgggcatagt
781 ggaatccatg atccttcttg ctgaactctt tggggtgttc tggacgcccc cagatgtgtc
841 tgcaataatt gctcccttac tcggtgacta cgagatgcaa ggccccgaag acctggccgt
901 ggaacttgtg cccgtggtaa tgggaggaat aggtttggtg ttaggattca ccaaggaaaa
961 gatcggcaag atgctttcat cagctgcaac cacactcagg gcctgtaagg atctaggatc
1021 ttatgggttg gagatactca aactggtcat gaagtggttc ttccccaaga aggaggaggc
1081 caacgagtta gccatggtga gggccattga ggatgcagtt ctggatttgg aggcaataga
1141 aaacaaccac atgaccactc tccttaagga caaagacgcc ctggccacat acatgaggac
1201 tcttgacttg gaagaagaaa aagcaaggaa actatcttcc aaatcggcgt cacctgacat
1261 cgtgggcaca gtaaacgcat tattggcaag aatagcagcc gccaggtcac tggtccacaa
1321 ggctaaggag gagctctcga gcagacagag acctgttgtt gtaatgatat caggtaggcc
1381 aggtatagga aagacccatc tggccagaga gctagccaag aaggttgcgt caacactgtc
1441 aggcgaccaa aggattggac tgatacccag aaatggcgtc gaccattggg acgcctacaa
1501 aggagagcgg gtggttctgt gggatgacta tggcatgagc aaccctatac aggacgcact
1561 gaggctccaa gaattggctg acacctgtcc tctgacccta aattgtgaca gaattgaaaa
1621 caaaggaaaa gtgttcgaca gcgacgccat aatcataacg accaaccttg caaacccagc
1681 accattggat tatgtcaact ttgaggcttg ttccagacgc atagacttct tggtgtatgc
1741 agacgcacct gacatcgaga aggctaagcg tgactttcct ggccaaccag atatgtggaa
1801 agaccattac agaccagact tctcacacat taaacttcag ctcgcaccac agggaggctt
1861 tgataagagt ggcaacaccc cacatggcaa aggcgtggtt aagtctctga cgattggctc
1921 tctgatcgcc agggcttctg gcttgctcca tgagagaatg gatgaattcg agctccaagg
1981 ccccaactta ccaaccttca atttcgaccg taacaaagtc gccgccttca gacaattggc
2041 agctgaaaac aaatacggtc ttatggacac actgagggtc ggcaaccaac tgaaaagtgt
2101 caaaaccctg gatgagctga agcaggccat aaagaacatc accatcaaga agtgccagat
2161 agtgtataat ggatgcacct acaccatgga atctgatggg aggaacaagg ttgtggttga
2221 aaaggttcaa aatgcaacag tccaaaccaa caatgaactt gcaggagcgc tccaccacct
2281 gagatctgca agaataaggt attatgtcaa atgtttccaa gaagctattt actctatact
2341 ccaaattgct ggtgcagcct tcgtcaccac acgcatcgtg aggcgcatga acatctcaaa
2401 cctctggtcg aagccacccg tcgaagaggg tgatgagcct gaagacaaag gggggtgccc
2461 caagcccagg gatgaagatg acctcactat tgactccaaa gacattaaag cagaaggtaa
2521 gaagggcaag aacaaatctg gccggggcaa gaaacacaca gctttctcat ccaagggcct
2581 cagtgatgaa gagtacgatg agtacaagag aatcagggag gagagaaatg gcaagtactc
2641 aatagaagaa tacctccagg atagggatag atactatgaa gagcttgcca ttgctaaggc
2701 cactgaggaa gacttctgtg aagaggagga aatcaaaatt cgccagagaa tcttccggcc
2761 caccaggaag cagcggaaag aggaaagagc cacgcttggg ctcgtcacag gatcggaaat
2821 cagaaagagg aacccagatg attttaagcc aaaaggaaaa ttgtgggctg atgacaacag
2881 gagtgtggac tacaatgaga ggatagattt tgaggctccc ccaagtgttt ggtctaggat
2941 agtcaacttt ggtacaggat ggggattctg ggtctcccca agtctcttta taacttcaac
3001 acatgtcata ccaaaaggaa ttactgaggc ctttggagtt cccattaacc aaattcaaat
3061 tcacaaatct ggagagtttt gccgcttgcg gtttccaaaa ccaatcaggc cagacgtgag
3121 tggaatgatc ttggaagagg gtgcccctga aggcactgtt gtttccattc tcatcaagag
3181 gacgacaggg gaactgatgc ctctcgcagt cagaatggga actcatgcca caatgaaaat
3241 ccaaggtaga acggtgggcg gtcaaatggg catgcttctc actggctcaa acgccaaaag
3301 catggaccta ggcacaacac caggtgactg tgggtgccca tacatataca aaaggggcaa
3361 tgacttcgtg gtcattgggg tgcacactgc agcagcccgt ggaggtaaca cggtcatatg
3421 tgccacacag gggagtgaag gcgaagccac cctcgaagga ggtgacaaca agggcaccta
3481 ttgtggagcc cccatcttgg gtcctggcaa cgcaccaaaa ttgagcacaa aaacaaaatt
3541 ctggagatct tctaacgcgc cgctcccgcc aggcacctac gaaccagcat accttggtgg
3601 aaaagacccg cgtgtgaagg gaggcccatc tctacaacag gttatgagag accaactcaa
3661 accttttaca gagcccagag ggaagccacc aaaaccaagt gtcctagaat cagcaaagaa
3721 gaccatcatt aatgttctgg aacaaaccat tgacccccct gaaaagtggt catatgccca
3781 agcttgtgca tccctcgaca agacaacctc cagtggatac ccgcatcacg tccggaagaa
3841 tgactactgg agtggtgaat ccttcacggg gaaacttgca gaccaggcct caaaagcaaa
3901 tctcatgtat gaggaaggta agcacatgca accagtttac accgcagcac tcaaagacga
3961 gctcgtgaaa actgacaaaa tttatggcaa gatcaagaaa agactcctgt ggggctctga
4021 cctatccacc atgattcgat gcgccagggc atttggtggc ctcatggacg agctcaaagc
4081 aaattgtatc acactcccta tcagagttgg tatgaacatg aatgaagatg gtcccataat
4141 atttgaaaag cactccaggt acaggtacca ctatgatgct gattattccc gctgggattc
4201 cacacaacag cgggcagtgc tggaagcggc acttgaaatc atggtgagat tttctgctga
4261 gccacagttg gcacaaatag tggcagagga cctgctatca ccaagtgtgg ttgatgtggg
4321 cgatttcaaa attactatta atgaaggcct accatctggc gtgccttgca cttcacaatg
4381 gaattctatt gcccactggt tactcaccct atgtgccctg tctgaagtga caggactagg
4441 ccctgacatc atacaagcca actccatgta ctctttctat ggtgatgatg agattgtgag
4501 cacagacata aaattagacc cagagaaatt gactgcaaaa ctcaaagaat atggtcttaa
4561 acccacccgg cctgacaaga ctgaggggcc actggtaatt agtgaggacc tgaatgggtt
4621 gactttcctc cgccgaacag tcacccgcga tccagcgggt tggtttggaa agttggacca
4681 aaactccatc ctcagacagc tgtactggac aaggggaccc aaccatgaag accccagtga
4741 gactatgata ccacacgcac agagacctgt gcagctcatg gcattgctag gagaatcctc
4801 cctacatgga ccctcatttt acagcaaggt tagcaaactg gttatatctg aacttaaaga
4861 gggaggaatg gatttttatg tgcccagaca agagtcaatg ttcaggtgga tgaggttctc
4921 agatctaagc acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg
4981 cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaata
5041 acgagaccct tcccctagaa ccagttgcgg gcgcagccat agccgcaccc gtcactggcc
5101 aaaataatat aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt
5161 tcacagtgtc acccagaaac tctcctggag aaattttact aaacctagag ttgggccctg
5221 atctgaaccc ttatttggct catttgtcaa ggatgtataa tggatatgct ggtggagttg
5281 aagtccaggt tctcctggca gggaacgcgt tcactgccgg gaagatcctc ttcgccgctg
5341 tcccgccaaa ttttccggtg gaattcttaa gcccagccca gattacaatg ctcccacata
5401 taatagtaga tgttaggact cttgaaccaa ttatgatccc attacctgat gttaggaata
5461 cattcttcca ctataataat cagcccaaca gccgcatgag attagtggct atgctctaca
5521 ccccccttag atctaatggc tcaggtgatg atgttttcac tgtttcttgc agggttttga
5581 ctaggcctac tcctgatttt gagttcactt atctagtgcc accctctgtt gaatctaaga
5641 ctaaaccctt ttctttaccc attctaaccc tttctgagct cacaaattcg aggttcccgg
5701 tccccatcga ttcgcttttc accgcccaaa ataatgtttt gcaggtgcag tgtcaaaatg
5761 gcaggtgcac acttgacggt gagctacaag gcacaaccca gttgctccca tctggcatct
5821 gtgcgttcag ggggcgggtg acagcagaaa ctgacaatcc tgacaagtgg cacatgcaac
5881 tgcaaaacct taatggcaca acatatgacc caactgatga tgtgccagcc ccactgggta
5941 cacctgactt caagggcgtc gtgtttggga tggcaagcca aagaaatgtg ggtaacgacg
6001 cgcccggctc aaccaggtcc catgaggcgg tgatttcaac ctacagcccc agatttgttc
6061 ctaaattagg ctctgtcaat ttcaaaagca atgatgatga tttccaattg cagccaacaa
6121 gattcacacc agtgggcatt aatgatgatg gcaaccaacc atttagacaa tgggaactac
6181 cagattattc aggagtgctt accttgaata tgaaccttgc cccccctgtt gctccaaatt
6241 tccctggcga acaattacta ttcttcagat cttctgtgcc atgttcagga ggttacaacc
6301 aaggtattat agattgcctt atcccccaag aatggatcca acacttctac caggaatcag
6361 caccttctca gtcagaagtg gccctaatca ggtacgtcaa ccccgacacg ggtcgtacac
6421 tgtttgaggc aaaattgcat aggtcaggct atatcactgt ggctcattct ggagattatc
6481 ctcttgttgt tccggctaat ggatacttta gatttgactc ttgggtaaat cagttttact
6541 cactcgcccc aatgggaact gggaatgggc gaaggagggc tcagtaatgg ctggagcttt
6601 cattgcagga ttggcgggtg acatgctcac gtcatccgtg ggctccctgg tgaacgcagg
6661 ggcaaacgcc atcaaccaaa agatagactt tgaaaacaac aaacaactcc agtctgcttc
6721 ctttcaacat gataaagaga tgctccaagc gcaggtgaac gcaaccaagc agctgcaatc
6781 tgagatgata gccctaaaac agggggtttt ggccgcaggc ggcttttccc ccactgatgc
6841 agcgaggggg gccatcggtg cacccatgac aaaggtgctt gactggtctg gcactcgata
6901 ctgggctccc aattccacaa agacaactgg ttattcgggg caattcacct cttcacctgt
6961 gcacatgccc agcccgagtg tcccacaatc aaaacccgca aagcccaagt ctctaggttc
7021 tccttcttct tctagtagtg tttacagtat gtctacccaa ttaacttctc taacatctgg
7081 ctcttctagt aatgcttctt ctgcttctac aaaattgaca aatttgagct ccggctcttc
7141 tcaaaacaga acagcagagt gggtgaacca acagagaagt ctcagccctt tcatgagtgg
7201 cgcactcaat atctcgcatg tcacgccacc ttcaagtagg gcctccagtt ctgggacggt
7261 ctcaaccgtg cccaaggaag ttttggactc ctggacatct gcattcaaca cacacag
//