Typing tool
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Typing tool
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Complete norovirus genomes
| PX700451 | GII.17 | |
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| GII.P17 |
ORF1: 1..4991
ORF2: 4972..6588
ORF3: 6588..7326
LOCUS PX700451 7326 bp RNA linear VRL 04-MAR-2026
DEFINITION Norovirus GII isolate 2414YC05 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION PX700451
VERSION PX700451.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7326)
AUTHORS Jin,m., yin,a. and yang,s.
TITLE Direct Submission
JOURNAL Submitted (15-DEC-2025) National Key Laboratory of Infectious
Disease Source Tracing, Early Warning and Intelligent
Decision-making, Institute of Viral Disease Control and Prevention,
China CDC, No. 155, Changbai Road, Changping District, Beijing
102206, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7326
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2414YC05"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Beijing,Changping"
/collection_date="Dec-2024"
/note="genotype: GII.17[P17]"
gene <1..4991
/gene="ORF1"
CDS <1..4991
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="YCB08072.1"
/translation="LGARSKQPPPGETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKV
TYKVGEGVSGLPDLTTVAQPDAQNTAYSVPPLSQREVGEAREPLPGSILEMWDGEIYH
YGLYVERGHVLGVHKPPAAISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGETFP
YTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAA
NAVLCALSSLFTRPIKDVIGKLKPLNIMNILATCDWTFAGIVESMILLAELFGVFWTP
PDVSAIIAPLLGDYEMQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRA
CKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKD
ALATYMRTLDLEEEKARKLSSKSASPDIVGTVNALLARIAAARSLVHKAKEELSSRQR
PVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWD
DYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVN
FEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSG
NTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAE
NKYGLMDTLRVGNQLKSVKTLDELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVE
KVQNATVQTNNELAGALHHLRSARIRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNI
SNLWSKPPVEEGDEPEDKGGCPKPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFS
SKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIR
QRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEA
PPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLR
FPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQ
MGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSE
GEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPR
VKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQAC
ASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDE
LVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGP
IIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSV
VDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYG
DDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPA
GWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKV
SKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..881
/gene="ORF1"
/product="p48"
mat_peptide 882..1979
/gene="ORF1"
/product="NTPase"
mat_peptide 1980..2516
/gene="ORF1"
/product="p22"
mat_peptide 2517..2915
/gene="ORF1"
/product="VPg"
mat_peptide 2916..3458
/gene="ORF1"
/product="Pro"
mat_peptide 3459..4988
/gene="ORF1"
/product="RdRp"
gene 4972..6588
/gene="ORF2"
CDS 4972..6588
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YCB08073.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6588..>7326
/gene="ORF3"
CDS 6588..>7326
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YCB08074.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSPSSSSSVYSMSTQLT
SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQP"
ORIGIN
1 ccctcggggc gcggtctaag cagccgcccc cgggagaaac aaaacaaaca ctaagaccac
61 caaggccgcc gacaccggaa ttggtgaaga agataccccc accccccccc aatggcgagg
121 atgaaccaaa ggtaacgtat aaggtgggag aaggtgtgtc tgggctgccc gacttaacaa
181 ccgtggcaca acctgacgca cagaacacag cctatagtgt ccccccactt agccagagag
241 aggtcggcga agctagagaa ccgttgcctg gctccattct ggaaatgtgg gatggtgaga
301 tctaccacta tgggctgtat gttgagcggg ggcatgtgct gggagtgcac aaaccacctg
361 ctgcaataag ccttgccaaa attgagttaa caccgctgtc tctctactgg agagtggtct
421 acactcccca gtacttgata gctccagaga ccctcaagaa tttaaatgga gagactttcc
481 catacacggc ctttgacaac aactgttatg ccttctgttg ttgggttcta gacctcaacg
541 actcctggct tagcagaaga atggtccaaa gaacaaccgg attcttcaga ccgtatcagg
601 actggaacag aaaaccctta ccaaccatgg atgaaccaaa aatcaagaag gccgcgaatg
661 ctgttctgtg tgctctctcc tcactcttca ctaggcccat caaagatgtc attggaaagc
721 ttaaaccact aaacattatg aacatactgg caacttgtga ttggactttt gcgggcatag
781 tggaatccat gatccttctt gctgaactct ttggggtgtt ctggacgccc ccagatgtgt
841 ctgcaataat tgctccctta ctcggtgact acgagatgca aggccccgaa gacctggccg
901 tggaacttgt gcccgtggta atgggaggaa taggtttggt gttaggattc accaaggaaa
961 agatcggcaa gatgctttca tcagctgcaa ccacactcag ggcctgtaag gatctaggat
1021 cttatgggtt ggagatactc aaactggtca tgaagtggtt cttccccaag aaggaggagg
1081 ccaacgagtt agccatggtg agggccattg aggatgcagt tctggatttg gaggcaatag
1141 aaaacaacca catgaccact ctccttaagg acaaagacgc cctggccaca tacatgagga
1201 ctcttgactt ggaagaagaa aaagcaagga aactatcttc caaatcggcg tcacctgaca
1261 tcgtgggcac agtaaacgca ttattggcaa gaatagcagc cgccaggtca ctggtccaca
1321 aggctaagga ggagctctcg agcagacaga gacctgttgt tgtaatgata tcaggtaggc
1381 caggtatagg aaagacccat ctggccagag agctagccaa gaaggttgcg tcaacactgt
1441 caggcgacca aaggattgga ctgataccca gaaatggcgt cgaccattgg gacgcctaca
1501 aaggagagcg ggtggttctg tgggatgact atggcatgag caaccctata caggacgcac
1561 tgaggctcca agaattggct gacacctgtc ctctgaccct aaattgtgac agaattgaaa
1621 acaaaggaaa agtgttcgac agcgacgcca taatcataac gaccaacctt gcaaacccag
1681 caccattgga ttatgtcaac tttgaggctt gttccagacg catagacttc ttggtgtatg
1741 cagacgcacc tgacatcgag aaggctaagc gtgactttcc tggccaacca gatatgtgga
1801 aagaccatta cagaccagac ttctcacaca ttaaacttca gctcgcacca cagggaggct
1861 ttgataagag tggcaacacc ccacatggca aaggcgtggt taagtctctg acgattggct
1921 ctctgatcgc cagggcttct ggcttgctcc atgagagaat ggatgaattc gagctccaag
1981 gccccaactt accaaccttc aatttcgacc gtaacaaagt cgccgccttc agacaattgg
2041 cagctgaaaa caaatacggt cttatggaca cactgagggt cggcaaccaa ctgaaaagtg
2101 tcaaaaccct ggatgagctg aagcaggcca taaagaacat caccatcaag aagtgccaga
2161 tagtgtataa tggatgcacc tacaccatgg aatctgatgg gaggaacaag gttgtggttg
2221 aaaaggttca aaatgcaaca gtccaaacca acaatgaact tgcaggagcg ctccaccacc
2281 tgagatctgc aagaataagg tattatgtca aatgtttcca agaagctatt tactctatac
2341 tccaaattgc tggtgcagcc ttcgtcacca cacgcatcgt gaggcgcatg aacatctcaa
2401 acctctggtc gaagccaccc gtcgaagagg gtgatgagcc tgaagacaaa ggggggtgcc
2461 ccaagcccag ggatgaagat gacctcacta ttgactccaa agacattaaa gcagaaggta
2521 agaagggcaa gaacaaatct ggccggggca agaaacacac agctttctca tccaagggcc
2581 tcagtgatga agagtacgat gagtacaaga gaatcaggga ggagagaaat ggcaagtact
2641 caatagaaga atacctccag gatagggata gatactatga agagcttgcc attgctaagg
2701 ccactgagga agacttctgt gaagaggagg aaatcaaaat tcgccagaga atcttccggc
2761 ccaccaggaa gcagcggaaa gaggaaagag ccacgcttgg gctcgtcaca ggatcggaaa
2821 tcagaaagag gaacccagat gattttaagc caaaaggaaa attgtgggct gatgacaaca
2881 ggagtgtgga ctacaatgag aggatagatt ttgaggctcc cccaagtgtt tggtctagga
2941 tagtcaactt tggtacagga tggggattct gggtctcccc aagtctcttt ataacttcaa
3001 cacatgtcat accaaaagga attactgagg cctttggagt tcccattaac caaattcaaa
3061 ttcacaaatc tggagagttt tgccgcttgc ggtttccaaa accaatcagg ccagacgtga
3121 gtggaatgat cttggaagag ggtgcccctg aaggcactgt tgtttccatt ctcatcaaga
3181 ggacgacagg ggaactgatg cctctcgcag tcagaatggg aactcatgcc acaatgaaaa
3241 tccaaggtag aacggtgggc ggtcaaatgg gcatgcttct cactggctca aacgccaaaa
3301 gcatggacct aggcacaaca ccaggtgact gtgggtgccc atacatatac aaaaggggca
3361 atgacttcgt ggtcattggg gtgcacactg cagcagcccg tggaggtaac acggtcatat
3421 gtgccacaca ggggagtgaa ggcgaagcca ccctcgaagg aggtgacaac aagggcacct
3481 attgtggagc ccccatcttg ggtcctggca acgcaccaaa attgagcaca aaaacaaaat
3541 tctggagatc ttctaacgcg ccgctcccgc caggcaccta cgaaccagca taccttggtg
3601 gaaaagaccc gcgtgtgaag ggaggcccat ctctacaaca ggttatgaga gaccaactca
3661 aaccttttac agagcccaga gggaagccac caaaaccaag tgtcctagaa tcagcaaaga
3721 agaccatcat taatgttctg gaacaaacca ttgacccccc tgaaaagtgg tcatatgccc
3781 aagcttgtgc atccctcgac aagacaacct ccagtggata cccgcatcac gtccggaaga
3841 atgactactg gagtggtgaa tccttcacgg ggaaacttgc agaccaggcc tcaaaagcaa
3901 atctcatgta tgaggaaggt aagcacatgc aaccagttta caccgcagca ctcaaagacg
3961 agctcgtgaa aactgacaaa atttatggca agatcaagaa aagactcctg tggggctctg
4021 acctatccac catgattcga tgcgccaggg catttggtgg cctcatggac gagctcaaag
4081 caaattgtat cacactccct atcagagttg gtatgaacat gaatgaagat ggtcccataa
4141 tatttgaaaa gcactccagg tacaggtacc actatgatgc tgattattcc cgctgggatt
4201 ccacacaaca gcgggcagtg ctggaagcgg cacttgaaat catggtgaga ttttctgctg
4261 agccacagtt ggcacaaata gtggcagagg acctgctatc accaagtgtg gttgatgtgg
4321 gcgatttcaa aattactatt aatgaaggcc taccatctgg cgtgccttgc acttcacaat
4381 ggaattctat tgcccactgg ttactcaccc tatgtgccct gtctgaagtg acaggactag
4441 gccctgacat catacaagcc aactccatgt actctttcta tggtgatgat gagattgtga
4501 gcacagacat aaaattagac ccagagaaat tgactgcaaa actcaaagaa tatggtctta
4561 aacccacccg gcctgacaag actgaggggc cactggtaat tagtgaggac ctgaatgggt
4621 tgactttcct ccgccgaaca gtcacccgcg atccagcggg ttggtttgga aagttggacc
4681 aaaactccat cctcagacag ctgtactgga caaggggacc caaccatgaa gaccccagtg
4741 agactatgat accacacgca cagagacctg tgcagctcat ggcattgcta ggagaatcct
4801 ccctacatgg accctcattt tacagcaagg ttagcaaact ggttatatct gaacttaaag
4861 agggaggaat ggatttttat gtgcccagac aagagtcaat gttcaggtgg atgaggttct
4921 cagatctaag cacatgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg
4981 gcgtcgaatg acgccgctcc atctaatgat ggtgctgctg gtctcgtacc agagggcaat
5041 aacgagaccc ttcccctaga accagttgcg ggcgcagcca tagccgcacc cgtcactggc
5101 caaaataata taattgaccc ctggattaga acaaattttg tgcaagcacc aaatggagag
5161 ttcacagtgt cacccagaaa ctctcctgga gaaattttac taaacctaga gttgggccct
5221 gatctgaacc cttatttggc tcatttgtca aggatgtata atggatatgc tggtggagtt
5281 gaagtccagg ttctcctggc agggaacgcg ttcactgccg ggaagatcct cttcgccgct
5341 gtcccgccaa attttccggt ggaattctta agcccagccc agattacaat gctcccacat
5401 ataatagtag atgttaggac tcttgaacca attatgatcc cattacctga tgttaggaat
5461 acattcttcc actataataa tcagcccaac agccgcatga gattagtggc tatgctctac
5521 acccccctta gatctaatgg ctcaggtgat gatgttttca ctgtttcttg cagggttttg
5581 actaggccta ctcctgattt tgagttcact tatctagtgc caccctctgt tgaatctaag
5641 actaaaccct tttctttacc cattctaacc ctttctgagc tcacaaattc gaggttcccg
5701 gtccccatcg attcgctttt caccgcccaa aataatgttt tgcaggtgca gtgtcaaaat
5761 ggcaggtgca cacttgacgg tgagctacaa ggcacaaccc agttgctccc atctggcatc
5821 tgtgcgttca gggggcgggt gacagcagaa actgacaatc ctgacaagtg gcacatgcaa
5881 ctgcaaaacc ttaatggcac aacatatgac ccaactgatg atgtgccagc cccactgggt
5941 acacctgact tcaagggcgt cgtgtttggg atggcaagcc aaagaaatgt gggtaacgac
6001 gcgcccggct caaccaggtc ccatgaggcg gtgatttcaa cctacagccc cagatttgtt
6061 cctaaattag gctctgtcaa tttcaaaagc aatgatgatg atttccaatt gcagccaaca
6121 agattcacac cagtgggcat taatgatgat ggcaaccaac catttagaca atgggaacta
6181 ccagattatt caggagtgct taccttgaat atgaaccttg ccccccctgt tgctccaaat
6241 ttccctggcg aacaattact attcttcaga tcttctgtgc catgttcagg aggttacaac
6301 caaggtatta tagattgcct tatcccccaa gaatggatcc aacacttcta ccaggaatca
6361 gcaccttctc agtcagaagt ggccctaatc aggtacgtca accccgacac gggtcgtaca
6421 ctgtttgagg caaaattgca taggtcaggc tatatcactg tggctcattc tggagattat
6481 cctcttgttg ttccggctaa tggatacttt agatttgact cttgggtaaa tcagttttac
6541 tcactcgccc caatgggaac tgggaatggg cgaaggaggg ctcagtaatg gctggagctt
6601 tcattgcagg attggcgggt gacatgctca cgtcatccgt gggctccctg gtgaacgcag
6661 gggcaaacgc catcaaccaa aagatagact ttgaaaacaa caaacaactc cagtctgctt
6721 cctttcaaca tgataaagag atgctccaag cgcaggtgaa cgcaaccaag cagctgcaat
6781 ctgagatgat agccctaaaa cagggggttt tggccgcagg cggcttttcc cccactgatg
6841 cagcgagggg ggccatcggt gcacccatga caaaggtgct tgactggtct ggcactcgat
6901 actgggctcc caattccaca aagacaactg gttattcggg gcaattcacc tcttcacctg
6961 tgcacatgcc cagcccgagt gtcccacaat caaaacccgc aaagcccaag tctctaggtt
7021 ctccttcttc ttctagtagt gtttacagta tgtctaccca attaacttct ctaacatctg
7081 gctcttctag taatgcttct tctgcttcta caaaattgac aaatttgagc tccggctctt
7141 ctcaaaacag aacagcagag tgggtgaacc aacagagaag tctcagccct ttcatgagtg
7201 gcgcactcaa tatctcgcat gtcacgccac cttcaagtag ggcctccagt tctgggacgg
7261 tctcaaccgt gcccaaggaa gttttggact cctggacatc tgcattcaac acacacagac
7321 agccgc
//