Typing tool
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Typing tool
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Complete norovirus genomes
| PX631122 | GII.7 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6731
ORF3: 6731..7504
LOCUS PX631122 7521 bp RNA linear VRL 04-DEC-2025
DEFINITION Norovirus GII isolate 24-16 nonstructural polyprotein (ORF1), VP1
(ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION PX631122
VERSION PX631122.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7521)
AUTHORS Huang,R.
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2025) Family of viruses, Qinghai Provincial
Center for Disease Control and Prevention, No. 81 Xincheng South
Road, Xining, Qinghai 810000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7521
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="24-16"
/isolate="24-16"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="2024-02"
/note="genotype: GII"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="YBW93190.1"
/translation="MKMASNDATAALGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKK
MLGAVPKSTKAPSSSQNCPTVKIGPKTLTVPPEPPNGEDTVQFDAKSETIIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPSYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPHQSWNRKPLPTIDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLVGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKS
VKTLEDLKAALRDVKFNECEIIYKSSKYRVSSNGKGSVSVDKIEDNVSQTVNEVHSAL
LRLRQARARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETHEVNEPGK
EAAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNEKLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGIKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSVLVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG
KPPRPAILEEAKKTVMNVLEQTIDPAKPWSYTQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6731
/gene="ORF2"
CDS 5079..6731
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="YBW93191.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLLAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLTVNICKFKGEVIAKKWRCSILSDSAPRRRDHRMDMEITNTDGTPIDPTEDTPGPI
GSPDFQGILFGVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVH
QPTVFTPVGVAGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPS
SGGHELGYMDCLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFIT
VAHTGDNPIVMPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 6731..7504
/gene="ORF3"
CDS 6731..7504
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="YBW93192.1"
/translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPTQPVSYVNNQNRQLSKVDSSPSFSSGSSVSSVKTQ
STALSGTSRVDSPSQSTLSTRPSSRTSDWVRSQNERLSPFMDGALQTVYVTPPPSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgctgccctt ggcagtcaaa actctgtcaa
61 tgacagtaac aacgccaccc cttctaacaa agaagaggtt ggtgcattct ccaacattaa
121 agttggattt aagaaaatgc tgggcgccgt acccaaaagt accaaagcgc ccagcagtag
181 tcaaaattgc cccacagtta agatcgggcc taaaacgtta acggtccccc ctgagccccc
241 aaacggtgag gatactgtgc aatttgatgc aaagtcagaa actataattg ggctaccaga
301 cttgacaacg gtgcaaaacg aacacgaaaa caccccatat actgtccctc cactaagtga
361 gagggagcac aggccggcca ctgaaccgct tcctggcaca atactggaga tgtgggatgg
421 tgaattttac cattactccg tgtacgtcag tgatggcaaa gctctgggag tccacaaacc
481 accggcggct ataagcctcg cgactataga gctcaccccc atatcactct actggaggcc
541 cgtttacact cccagctatt tggtctctcc agacacatta aagggcctag ctggtgagaa
601 gttcccctac acggccttta gtaacaactg ttacaacttc tgttgttggg tgcttgagct
661 caacgacacg tggcttaaca gaagatgcat ttctagaact accggcttct tcaaaccaca
721 ccagtcttgg aatagaaaac ctctcccaac tattgatgat ggaaagatca aaaaggtggc
781 caatgcgatc ctctgtgcac tcggttcgtt gttttcaaaa ccgatcaagg acctattagg
841 taaactcaag ccattaaatc tactacactt gctcgcgtcc tgtgattgga cgtttgcagg
901 catagtggag acagtcatct taatggcgga actcttcaat gtattctgga ccccaccaga
961 tgtctccaat tttatagcct ccctggtagg tgattttgaa ttgcaagggc ctgaagacct
1021 ggctgtggag ctcgtccccg tggtcatggg tggcataggg atggttctcg gcttcactgc
1081 tgagaagatt ggccgcatgc tgtcgtccgc tgcatcaaca ctgcgggcat gcaaagacct
1141 agggaactac gcccttgaca tactcaaatt ggtcatgaaa tggttcttcc caaagaagga
1201 agagaaggct gagatggaaa ccctgagggc gattgaagac gccgtacttg atatggaagc
1261 tatagggaac aaccacctca cgacccttct caaggataaa gacagcctca cagctttcat
1321 gaagaccttg gatctagaag aggagaaggc aagaaaactg tccaccaaat catcttcacc
1381 ggacatagtc ggcaccatca acgccatatt agctaggata gctgccgcta gatcccttct
1441 acataaggcc aaagaagaga tgttcagtag gatcagacct gtggtcgtca tgatctcagg
1501 cagacctggc attggaaaaa cccacatggc gagacacctg gctaagagca tcgccaacac
1561 catgagtggt gatcagagag ttggactcgt tccacggaat ggtgtcgatc attgggacgc
1621 ctacagggga gagagggtgg tcttgtggga tgactacggc atggggagtc ccgttaaaga
1681 tgctctgaca ctgcaagagt tggccgacac atgtccagtc actttaaatt gtgacaggat
1741 tgagaataag ggaaagatgt ttgatagcga tgtcatcata atcacgacca acctagtcaa
1801 ccccgcaccc ctcgactatg tgaacttcga ggcgtgttct aggagagttg acttcctggt
1861 ttatgcagag tcaccagaaa ttgaaaaggt caagagagac ttccctggcc agcctgacat
1921 gtggaaggac cattttaaac cagacttttc ccatattaag ttgacactag ccccccaggg
1981 tgggtttgac aaaaatggca acaccccaca cggcaagggt accatgcggt ccttaaccca
2041 ggggtccctg actgcgagag tcgcaggcct tgtccatgag aggaaggacg agttccagct
2101 ccaaggaaat gacctccaaa catacaactt tgacaccaac agagtctccg catttagaaa
2161 actggctgca gataacaagt atggtattat ggagacgatg agagttggtg cagcgctcaa
2221 gagtgtgaag accttggaag atcttaaagc tgcattgagg gatgtgaaat tcaatgagtg
2281 tgaaataatt tacaagagct ctaagtaccg agtctcttcc aacggcaaag gctcggtttc
2341 tgttgacaaa attgaagaca atgtttccca gactgtgaac gaggtgcatt cagcacttct
2401 tagactcagg caggcaaggg ctagatatta catcagctgc ttccaagatc tcgtttacac
2461 tctcatacag gttgccgggg catcattcgt cgtcagtaga atctctagaa ggttctgctg
2521 ggaaaggtgg gtgaaaccga ccgagaccca cgaagtaaat gagcccggaa aagaagcagc
2581 ccaaggcaga tgggagattg agcccaagga tacagaacca gaaggcaaga agggcaagaa
2641 caagaaagga aggggcaaga aacatacagc tttctctagc aaaggcctga gtgatgaaga
2701 gtatgatgag ttcaagagaa tcagggaaga aaggaacgga aagtactcca ttgaggaata
2761 cctgcaggac cgagaccgct attatgaaga ggtggcggtt gctcgggcga cagaggagga
2821 cttctgtgaa gaggaagaag ccaagataag acaaagaatt ttccgcccga caaggaaaca
2881 gagaaaggag gaaaggggtg tgcttggctt ggtaactggc tcagacatca gaaagaggag
2941 acccgacgac tttcaaccaa aaggcaacct gtgggcagat gacaccagaa gcgtggacta
3001 caatgagaag cttgattttg aagcacctcc tagtgtttgg tcaagaatag tcccactggg
3061 cactggttgg gggttttggg tttcatccaa ccttctaatc acaacaacac acgtcctgcc
3121 caaagggatc aaggaacttt ttggagttga aatcaaacaa atccaagttc ataagtctgg
3181 agagttttgc aggtttaggt ttccaagacc catcaggcca gatgtcacag gactcgtgct
3241 ggaggaaggc gccccggagg gcaccgtctg ttctgtactc gtaaaaagac ccacaggtga
3301 aatgatcccc cttgcagtaa gaatgggtac gcacgcatcc atgaaaatac aaggcaggac
3361 agttggtggc cagatgggga tgctcctcac gggagcaaac gcgaagaaca tggatctcgg
3421 cactggtcct ggtgactgcg gttgccccta catctacaaa cgtggcaacg acatagttgt
3481 cgcgggtgtt cacaccgcag cagcccgtgg gggcaacact gtcatatgtg ccacccaagg
3541 gcaagacggg gaagcagtcc ttgaaggaaa tgaggacctt ggcacctact gtggcgcccc
3601 aattctgggt cccggcaagg cgcccaaact cagcacgaag accaaatttt ggcgctcatc
3661 accagatgcc ttgccacctg gcacatacga acctgcttac ctaggtggca aagaccctag
3721 ggtggaaaaa ggtccctcct tgcagcaagt catgagagac cagttgagac ccttcacaga
3781 gcccaggggc aaaccgccca gacctgcaat cctggaggaa gccaaaaaga cagtgatgaa
3841 tgttttagaa caaaccattg accccgccaa gccatggtcc tacacccagg catgtgcctc
3901 acttgacaaa actacttcta gtggtagtcc ccatcatgtt aggaaaaatg accactggaa
3961 tggggagtcc ttcactggtc cacttgcaga tcaggcatct aaagccaacc tcatgtatga
4021 acaggccaaa catgtgcagc ccgtgtacac ggcagcgctc aaagatgaac ttgttaagac
4081 tgataagatc tacaagaaga taaagaagag gctcctatgg gggtcggacc ttggcacaat
4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gttgcatagc
4201 tctcccctgc agggtaggaa tgaacatgaa tgaagatggc cccatcatat ttgacaaaca
4261 ctctaagtac aggtaccact atgatgctga ttattctagg tgggactcaa cccaacagag
4321 gagcattctc tctgccgcta tggaagtaat ggtgcggttt tctgccgaac cagaactggc
4381 acaagtggtt gcagaggatc ttttggctcc tagccagctt gacgttggtg actttgtcat
4441 ctcagtccag gaaggtctac catcaggagt cccatgcaca tcacaatgga attcaatagc
4501 acactggatc ctgactttga gcgcaatggc agaagtgtca ggtctctcac cagatgtaat
4561 ccaagctcac tcctgttttt cattttacgg ggacgatgag atcgtcagta ctgatatcaa
4621 tctcgacccc atgaagttga cacagaaact cagggagtat ggtctggtcc ccacccggcc
4681 tgataagact gaaggccccc tcgttataac tgaagatctc accggcctga cattcctccg
4741 taggtcgatt gcccgggacc cagctggttg gtttgggaaa ctggaccaag actcaattct
4801 caggcagcta tactggacaa gggggcctaa ccatgagaac ccgtacgaga gcatggtccc
4861 tcattctcag cgggccacac agctcatggc ccttcttggt gaggcctccc tgcatggtcc
4921 acagttttac aagaaagtta gcaagatggt catcaatgag attaaaagtg gtggtctgga
4981 attttatgtg cccagacaag aggccatgtt caggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
5101 cagctccatc taatgatggt gcagcaggcc tcgtgccaga gatcaacaat gaggtcatgc
5161 cccttgagcc cgtggctggt gcatcgctgg cgacaccagt tgtcgggcaa caaaatataa
5221 ttgatccctg gataagaaat aattttgtac aagctcctgc aggtgagttt acagtttccc
5281 ctagaaattc tcctggtgaa attttgcttg atttggagtt agggccagag ttaaacccct
5341 atctcgccca tctggcccgt atgtacaatg ggcacgctgg tggcatggaa gtgcaaattg
5401 tgttggctgg gaacgcgttc acagctggca agatcatatt tgctgccatc cctccagggt
5461 tcccgtacga aaatttgtca ccttcacaaa ttacaatgtg cccccatgtt ataattgatg
5521 ttagacaatt agaaccggtc ctattaccta tgccagatat cagaaacaat ttcttccatt
5581 acaatcaggg taacgaccca aaattgagat tgttagctat gctctatact cctttaaggg
5641 ctaacaattc tggtgatgat gtgttcacag tttcttgtag ggttctcact aaaccatcac
5701 ctgattttga attcacattt ctggtccccc ctacagttga atccaagacc aagcaattca
5761 cgttgcccat cctcaaaatt tcagagatga ccaattcaag attcccagtg ccggtggaaa
5821 tgatgtatac agcaaggaat gagaatcaag tcgtccagcc acagaatggt cgggtcacac
5881 tcgatggcga gctattgggc accacgccct tgttaactgt caacatctgt aaattcaagg
5941 gagaggtcat agctaagaaa tggagatgtt caatcctatc cgactcagcc cctcggagaa
6001 gggatcacag gatggacatg gaaatcacca acactgatgg caccccaatt gaccccactg
6061 aagatacacc tggtcccatt ggatcacctg actttcaagg tatactcttt ggcgttgcca
6121 gccaacgcaa caaaaatgag caaaaccctg ccacgagagc ccacgaagcc aacatcaata
6181 ctggcgggga ccaatatgcc cctaaattgg ctcaagtgaa attcttctca gagtcccagg
6241 atttcgaggt gcaccagccc acagttttca ccccagttgg tgtggcaggt gacacttccc
6301 accctttcag gcagtgggtc ctacctcgat atggtggaca tctcaccaac aacacccact
6361 tggctccagc agtggccccc ctattcccag gtgagcagat tctgttcttt agatcacaaa
6421 tacctagttc aggcggccat gaattgggtt acatggactg ccttgtccca caggaatggg
6481 tccaacactt ctatcaagaa gctgccacag ctcagtctga ggtggcactc ataaggttca
6541 tcaaccctga cactggcaga gtcctctttg aggccaagct acacaagcaa ggctttataa
6601 ctgtggctca caccggtgac aacccaattg ttatgccgcc aaatgggtac ttcagatttg
6661 aagcctgggt caatcagttt tactcacttg cccccgtggg aactgggaat gggcgcagga
6721 ggattcaata atggctagtg ctttctttgc aaatttggca gggggcgtcg cctccaatgg
6781 aatcagttca ctcataaatg ctggagctaa tgctattaac caaaaggttg agtttgatta
6841 taataaacaa ctccaaaatg catccttctc ccacgataaa gaaatgctcc aagcccaaat
6901 tgaagccact aaacgcttgc aacaagagat gattgacata aaacaagggg tgctgacagc
6961 tgcgggattc tctcccacgg atgccgcgag gggttctgtt ggcgcgccaa tgacaaaatt
7021 agttgattgg agtggtacca gatattgggc tcctggtgcc atgaggacaa caggttattc
7081 agggactttt actcacttgc ctcctactca gcctgtttca tatgttaata atcagaatag
7141 acaactttct aaagtagact cttctccttc tttttcaagt ggttcttcag tttcttctgt
7201 taaaacacaa tcaaccgctc tctcgggcac ttcaagggtg gactctccat ctcagtcaac
7261 cctgtcgacc aggccgagct caaggacatc tgattgggtg cgtagccaaa atgaaaggtt
7321 gagccccttc atggatggag cgttgcaaac agtgtatgta acgccaccac ctagcagggc
7381 atcaagtgtc agcacagtct cgaccgtgcc gaaagaggtt ttggactcct ggacgcctat
7441 gtttaacact cacaggcagc cgctcttcgc ccacttgcgt aggcgagggg agtcacagat
7501 ttagtgaaaa gattaattag g
//