Typing tool
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Typing tool
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Complete norovirus genomes
| PV688625 | GII.17 | |
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| GII.P17 |
ORF1: 1..5098
ORF2: 5079..6704
ORF3: 6704..7419
LOCUS PV688625 7419 bp RNA linear VRL 30-JUN-2026
DEFINITION Norovirus GII isolate VE6502 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION PV688625
VERSION PV688625.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7419)
AUTHORS Le,L.K.T., Doan,Y.H., Chu,M.N.T., Nobuhiro,T., Tsutomu,K.,
Tomoichiro,O., Umesh,P.D., Jacqueline,T.E. and Nguyen,T.V.
TITLE Molecular Characterization of Noroviruses Causing Acute
Gas-troenteritis in Vietnam from 2016 to 2021 and the Detection of
GII.4 Hong Kong Variant
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7419)
AUTHORS Le,L.K.T., Doan,Y.H., Chu,M.N.T., Nobuhiro,T., Tsutomu,K.,
Tomoichiro,O., Umesh,P.D., Jacqueline,T.E. and Nguyen,T.V.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2025) Center for Bio-Medical Research, National
Institute of Hygiene and Epidemiology, No 1 Yersin street, Hanoi
10000, Viet Nam
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneous v. 2025.1.1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7419
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="VE6502"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Viet Nam"
/collection_date="Aug-2020"
/note="genotype: GII.17 [P17]"
gene <1..5098
/gene="ORF1"
CDS <1..5098
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="XUI59016.1"
/translation="SNDASTAVAGKNNNNDNEKSSSDSLFANMSVTFKKALGARSKQP
PPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDA
QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL
AKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL
RPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK
SASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA
KKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
KRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS
GLLHERMDEFELQGSVLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD
ELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQSATVQTNNELVGALHHLRS
ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCP
KPRDEDDLTIDSKDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
LFITSTHVIPKGITEAFGVPINQIQVHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
VVSILIKRTTGELMPLAVRMGTHATMRIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPR
GKPPNPNVLDSAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS
GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVVSEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..988
/gene="ORF1"
/product="p48"
mat_peptide 989..2086
/gene="ORF1"
/product="NTPase"
mat_peptide 2087..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6704
/gene="ORF2"
CDS 5079..6704
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XUI59017.1"
/translation="MKMASNDVAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGIN
DDDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGII
DCLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPL
VVPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6704..>7419
/gene="ORF3"
CDS 6704..>7419
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XUI59018.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSLNAPQSKPAKSRSLAPSSSSSSAYSMYTQST
HLSSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSA"
ORIGIN
1 gtctaacgac gcttccaccg ccgttgctgg caaaaacaac aacaacgaca atgaaaaatc
61 ttcaagtgac agcttgtttg ctaacatgtc tgtcaccttt aagaaagccc tcggggcgcg
121 gtctaaacaa ccgcccccgg gagaaacaaa acaaatacag aaaccaccaa ggccaccgac
181 accggaattg gtgaagagaa tacctccacc cccacccaat ggcgaggatg aaccagggat
241 agtgtacaag gtgggagagg gtgtgtctgg gctgcccgac ctaacaactg tggcacaacc
301 tgacgcacaa aatacagctt atagtgttcc cccacttagc cagagagaag tcggcgaagc
361 taaagaaccg ctgcctggct ccattctgga aatgtgggat ggtgagatct accactatgg
421 gctgtatgtt gagcgggggc atgtgctcgg agtacacaaa ccacctgctg caataagcct
481 tgccaaaatt gaaataacac cgctgtctct ctactggaga gtggtctaca ctccccagta
541 tttgatagac ccaggaactc ttaagaactt gagtggagag actttcccat acacggcctt
601 tgacaacaac tgttatgcct tctgttgttg ggtcctagac ctcaacgact cctggcttag
661 caggagaatg atccaaagaa caactggatt cttcaaacct tatcaggatt ggaacagaaa
721 acccttacca accatggatg aaccgaaaat caagaaggcc gcgaatgccg tcctatgcgc
781 tctctcctca ctcttcacta gacccattaa ggacatcatt ggaaagctta gaccactgaa
841 cattcttaat atactggcaa cctgcgattg gacttttgca ggcatagtgg aatccttgat
901 ccttcttgct gaactctttg gggtgttctg gacaccccca gatgtgtctg cgatgattgc
961 tcccttactc ggtgactacg agatgcaagg ccccgaagac ctggccgtgg aacttgtacc
1021 cgtggtgatg ggaggaatag gtctggtgtt aggattcacc aaagaaaaga tcggcaagat
1081 gctttcatca gctgcgacca cacttagggc ctgcaaggat ctaggatctt atggattgga
1141 gatactcaaa ttggtcatga agtggttctt ccccaagaag gaggaggcta acgaactagc
1201 catggtgagg gccattgagg atgcagtcct ggatttggag gcaatagaaa acaatcacat
1261 gaccaccctt ctcaaggata aagacagcct ggccacatac atgaggactc ttgacttgga
1321 agaagagaaa gcaaggaaac tgtcaaccaa atcggcgtca cctgacatcg tgggtacaat
1381 aaacgcattg ttggctagga tagcagccgc caggtcactg gtccacaagg ctaaggagga
1441 gctctcgagc agacagagac ctgttgttgt aatgatatca ggtagaccag gtataggaaa
1501 gacccatctg gccagagagc tagccaagaa agttgcgtca acactgtcag gcgatcaaag
1561 gattggactg gtacctagga atggcgtcga ccattgggac gcctacaagg gagaaagggt
1621 ggtcctgtgg gatgattatg gtatgagcaa ccctatacag gacgcactga ggctccaaga
1681 attggctgac acctgtcctc tgaccctaaa ttgtgatagg attgaaaaca aaggaaaagt
1741 gttcgacagt gatgccataa ttataacaac caatcttgca aacccagcac cactagacta
1801 tgtcaacttt gaggcctgct ctagacgcat agacttcttg gtgtatgcag acgcacctga
1861 cattgagaag gctaagcgtg acttccctgg ccaaccagat atgtggaaag accatttcag
1921 accagacttc tcacacatta aacttcagct ggcaccacag ggaggttttg acaaaaatgg
1981 caacacccca catggcaaag gtgtggtaaa gtccctgacg attggttctc tgattgccag
2041 ggcctccggc ttgctccacg agagaatgga tgaattcgag ctccaaggct ctgtcctgcc
2101 aaccttcaat tttgaccgca acaaagtcgc cgccttcaga caattagcag ctgaaaacaa
2161 atatggtctt atggacacat tgagggtcgg caaccaactg aaaagtgtta agaccctgga
2221 tgagctgaag caggccataa agaacatcag tatcaagaag tgtcagatag tgtacaatgg
2281 atgcacctat accatggaat ctgatggaag gggcaaggtt gtggttgaaa aggtacaaag
2341 cgcaacagtt caaaccaaca atgaacttgt aggggcgctc caccacctga gatctgcaag
2401 gataagatac tatgttaaat gtttccaaga agccatttac tctctactcc aaattgctgg
2461 tgcagccttt gtcacctcac gcatcgtgag gcgcatgaac atatcaaacc tctggtcaaa
2521 gccacccatc gaggagggtg atgagcctga agacagagga ggatgcccca agcccaggga
2581 tgaagatgac ctcactattg actctaaaga cattaaagtg gaagggaaga agggcaagaa
2641 caagtctggc cggggcaaga aacacacagc cttctcttcc aagggcctca gtgatgaaga
2701 gtacgatgag tacaagagaa tcagagagga gaggaatggc aaatactcaa tagaggaata
2761 cctccaagat agggacagat actatgaaga gcttgccatt gctaaggcca ctgaggaaga
2821 cttctgtgag gaggaggaga tcaaaatccg ccagagaatc ttccgaccca ccaggaagca
2881 gcggaaagag gaaagggcca cgcttgggct tgtcacagga tcggaaatca gaaagaggaa
2941 tccagatgac tttaaaccaa aaggaaaatt gtgggctgat gacaacagga gcgtggatta
3001 caatgagagg atagattttg aggctccccc gagtgtttgg tctaggatag tcaactttgg
3061 cacaggctgg ggattctggg tttctccaag tctctttata acttcaacac acgtcatacc
3121 aaaaggaatc actgaggcct ttggagtgcc cataaaccaa atccaagttc ataaatctgg
3181 agaattttgc cgcttgcggt ttccaaagcc aattagacca gacgtgagtg ggatgatctt
3241 ggaagagggc gcccctgaag gcactgttgt gtctattctc atcaaaagga caacagggga
3301 gctgatgcct cttgcagtca gaatggggac tcatgccaca atgaggatcc aaggtagaac
3361 ggtgggtggt cagatgggta tgcttctcac tggctcaaat gctaaaggca tggatctagg
3421 cacaacgcca ggtgactgcg gatgtccata catatacaaa aggggcaatg accttgtggt
3481 cattggggtg cacactgcag cagctcgtgg aggcaacacg gtcatatgtg ccacacaggg
3541 aagtgaaggt gaagccactc ttgaaggagg tgacaacaag ggtacctatt gcggagcccc
3601 cattttggga cctggcaacg caccaaaatt gagcacgaag acaaaattct ggagatcctc
3661 taacgcaccg cttcccccag gtacttatga accagcatac cttggtggga gagacccgcg
3721 cgtgagggga ggcccatctc tgcaacaagt tatgagagac caacttaaac cttttacaga
3781 gcccagaggg aagccaccaa acccaaatgt cttagattca gcaaagaaga ctatcatcaa
3841 tgttctggaa caaaccattg acccccctca aaagtggtca tatgcccaag cttgtgcatc
3901 cctcgacaag acaacctcca gtggataccc gcaccacgtc cggaagaatg actattggag
3961 tggtgaatcc ttcacaggaa aacttgcaga tcaggcttca aaagcaaatc tcatgtatga
4021 ggaaggcaag cacatgcaac cagtttacac cgcagcactc aaagacgagc tcgtgaaaac
4081 tgacaaaatt tatggtaaaa tcaagaaaag actcctgtgg ggttctgacc tctccacaat
4141 gattcgatgc gccagagcat ttggtggtct catggatgaa ttcaaagcaa attgtatcac
4201 actccctatt agagttggta tgaatatgaa tgaagatggc cccataatat ttgagaaaca
4261 ctccaggtac aggtaccact atgatgctga ttactcccgc tgggactcca cacaacagcg
4321 ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc cacagctggc
4381 acaaatagtg gcagaggacc tgctgtcacc aagtgtggtt gatgtgggcg attttaaaat
4441 cgctatcaat gaaggcctac catctggcgt gccttgcacc tcacaatgga actctattgc
4501 ccactggtta cttaccttgt gtgccctttc tgaagtgaca ggattaggtc ctgacatcat
4561 acaagctaac tccatgtact ctttctatgg tgatgatgag attgtgagca cagatataaa
4621 attggaccca gagaagttga ccgcaaagct caaagaatat ggccttaaac ctactcggcc
4681 cgacaaaact gagggaccgt tggtggttag tgaggacctg aatgggttga ctttccttcg
4741 ccgaacagtc acccgtgatc cagcaggttg gtttggaaag ttggaccaaa actccatcct
4801 caggcagttg tactggacaa gaggacccaa ccatgaagac cccagtgaga ccatgatacc
4861 acacgcacaa agacctgtgc agctcatggc actactagga gaatcctccc tacatggacc
4921 ctcattttac agcaaggtta gcaaattagt catatctgaa cttaaagagg gaggaatgga
4981 tttttatgtg cccagacaag agtcaatgtt cagatggatg aggttctcag atctaagcac
5041 atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
5101 tcgctccatc taatgatggc gctgctggtc tcgtaccaga gggcaacaac gagacccttc
5161 ccctagaacc agttgcgggc gcagctatag ccgcacccgt cactggccaa aataatataa
5221 ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc acagtgtcac
5281 ccagaaactc tcctggagaa attttattaa atttagagtt gggccctgat ttgaaccctt
5341 atttggctca tttgtcaagg atgtacaatg ggtatgctgg tggagtggaa gttcaggttc
5401 tcctggcagg gaacgcgttc actgccggaa agatcctctt cgccgccgtc ccgccaaact
5461 tcccagtgga attcttaagc ccagcccaga tcacaatgct cccacattta atagtagatg
5521 ttaggactct tgaaccaatt atgatcccac tccctgatgt taggaataca ttcttccatt
5581 atagtaacca gcctaacagc cgcatgagat tagtggctat gctctatacc ccactcagat
5641 ctaatggctc aggtgatgat gtctttactg tctcttgcag ggttttgact aggcctactc
5701 ctgattttga gttcacttat ttagtgccac cttctgttga atctaaaact aagccttttt
5761 ccttacctat tttaaccctt tctgagctca caaattcgag gtttccagtc cccattgatt
5821 cgcttttcac cgcccagaat aatgtgttgc aggtgcagtg tcaaaatggc aggtgtacac
5881 ttgatggtga gttacagggc acaacccagt tgctcccaac tggcatctgt gcattcagag
5941 gacgggtgac agcacaaatt aatcaacgtg acaggtggca catgcaactg caaaacctca
6001 atggtacaac atatgaccca actgatgatg tgccagcccc gctgggtaca cctgacttca
6061 agggcgtcgt gtttgggatg gtaagccaaa gaaatgtggg taatgacgcg cctggctcaa
6121 ccagggccca acaggcgtgg gtttcaacct atagccccca attcgtcccc aaattaggtt
6181 ctgttaatct tagaattagt aataatgatg atttccaatt ccagccgaca aaattcacac
6241 cagtgggcat caatgatgac gatgatgatg atcacccgtt cagacagtgg gaactaccaa
6301 actattcagg ggagcttacc ttgaatatga atcttgcccc cccagttgct ccaaattttc
6361 ctggtgaaca attgttattc ttcagatctt tcgtgccatg ctcaggaggt tacaaccaag
6421 gtattataga ttgtcttatt ccccaagaat ggatccaaca tttctatcag gaatcagcac
6481 cctcccagtc agacgtggcc ctaatcaggt atgtcaaccc cgatacgggg cgtacactgt
6541 ttgaagcaaa attgcacaga tctggttaca ttactgtggc tcactctgga gactaccctc
6601 ttgttgttcc ggctaatgga cactttagat ttgattcttg ggtaaatcag ttttactcac
6661 tcgccccaat gggaactggg aatgggcgaa ggagggctca ataatggctg gggctttcat
6721 tgcaggattg gcaggcgaca tgctcacgtc atctgtgggc tcccttgtga acgcaggggc
6781 aaacgccatc aaccaaaaga tagattttga aaacaacaaa caactccagt ctgcttcctt
6841 tcagcatgat aaagagatgc tccaagcgca ggtgagggca accaagcagc tgcaatctga
6901 aatgatagcc ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc
6961 aaggggatcc attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg
7021 ggcgcccaat tccacaaaga caactggcta ttcgggacaa tttacctctt cacctgtgca
7081 tatgtctagc ctaaatgctc cacaatcaaa acctgcaaag tctaggtctc tagctccttc
7141 ctcttcttct agcagtgcct atagtatgta tactcaatct actcatttgt catctggctc
7201 ttctagtaat gcttcttctg cctccacaaa attgacaaat ttaagctctg gctcctctca
7261 aaacagaaca gcagagtggg taaatcaaca gagaagtctt agccctttca tgagtggcgc
7321 acttaacatc tcacatgtca cgccaccctc aagtagggct tccagttctg ggacggtctc
7381 gaccgtgccc aaggaagttt tggactcctg gacgtctgc
//