Typing tool
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Typing tool
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Complete norovirus genomes
| PV553833 | GII.14 | |
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| GII.P7 |
ORF1: 1..2186
ORF2: 2167..3777
ORF3: 3777..4571
LOCUS PV553833 4587 bp RNA linear VRL 27-APR-2025
DEFINITION Norovirus GII isolate NoV-NODE_A193_AFP38_NGR_2020 nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION PV553833
VERSION PV553833.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 4587)
AUTHORS Agbaje,S., George,U., De Coninck,L., Faleye,T., Ifeorah,I.,
Onoja,B., Olayinka,O., Ajileye,T., Oragwa,A., Akinleye,T.,
Popoola,B., Komolafe,I., Adeniji,A., Matthijnssens,J. and
Adewumi,O.
TITLE Molecular Characterization and Genetic Diversity of Norovirus
Strains Recovered from Stool of Nigerian Children
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4587)
AUTHORS Agbaje,S., George,U., De Coninck,L., Faleye,T., Ifeorah,I.,
Onoja,B., Olayinka,O., Ajileye,T., Oragwa,A., Akinleye,T.,
Popoola,B., Komolafe,I., Adeniji,A., Matthijnssens,J. and
Adewumi,O.
TITLE Direct Submission
JOURNAL Submitted (22-APR-2025) Institute of Genomics and Global Health
(formerly ACEGID), Redeemers University, Ede/Osogbo Road, Ede, Osun
232102, Nigeria
COMMENT ##Assembly-Data-START##
Assembly Method :: meteSPAdes v. V3.15.3
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4587
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NoV-NODE_A193_AFP38_NGR_2020"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Nigeria: Edo"
/collection_date="Sep-2020"
/note="genotype: GII.14[P7]"
gene <1..2186
/gene="ORF1"
CDS <1..2186
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XRP74810.1"
/translation="TGSDIRKRRPDDFQPKGNLWADDTRSVDYSERLDFEAPPSVWSR
IVPLGTGWGFWVSSNLLITATHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRP
DVTGLVLEEGAPEGTVCSVLIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTG
ANAKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEG
NENLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSL
QQVMRDQLKPFTEPRGKPPRPVVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTT
SSGSPHHVKKNDHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKI
YKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHS
KYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFV
ISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVST
DINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLD
QDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINE
IKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..110
/gene="ORF1"
/product="VPg"
mat_peptide 111..653
/gene="ORF1"
/product="Pro"
mat_peptide 654..2183
/gene="ORF1"
/product="RdRp"
gene 2167..3777
/gene="ORF2"
CDS 2167..3777
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XRP74811.1"
/translation="MKMASNDATPSDDGAAGLVPEINNEVMALEPVAGASLAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD
IRNVFYHYNQNNGPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP
TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNESIIVQPQNGRCTTDGELLGTT
ILQSVSICNFKGTMQAELNEEPRYQLQLTNLDGSPIDPTDDMPAPLGTPDFQAMLYGV
ASQRSSRDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSRDFDLHDPTKFTPIGVNVDD
QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP
QEWIEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMPTN
GYFRFEAWVNPFYTLAPVGTGSGRRRIQ"
gene 3777..4571
/gene="ORF3"
CDS 3777..4571
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XRP74812.1"
/translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA
SFKHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVKAPMTQILDWNG
SRYWAPNSMKTTGYSGTFVSQGVKNFPHLSNQTPSTVKPIKPLPSTSSSSSVYSSPST
APSQSTQSTMLSAGTGSSRSNTASAKTSTLSRTSDWVRSQNEMLGPFMSGALQTAYVT
PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 tcaccggctc agacattaga aagaggagac cagatgattt ccaaccaaaa ggcaacttat
61 gggcagatga caccagaagt gtggactaca gtgagaggct tgattttgaa gcgcccccga
121 gtgtttggtc aagaatagtc ccattaggca ctggttgggg attttgggtt tcgtccaacc
181 ttctgatcac agcaacacac gtcctaccta aaggagttaa ggagctcttt ggagtcgaga
241 tcaaacaaat tcaggttcac aagtctggag aattctgcag gtttagattc ccaagaccaa
301 tcaggccaga tgtcacagga ctcgtgttgg aggaaggcgc cccagagggc actgtctgtt
361 ctgtgctcat aaagagaccc acaggtgaga tgatcccctt ggcagtaagg atgggcacac
421 atgcatccat gaaaatacaa ggtaggactg ttggtggtca gatggggatg ctcctcacgg
481 gagctaacgc taagaacatg gacctcggca ccggtcctgg tgactgcggt tgcccttaca
541 tctacaaacg tggcaacgac attgttgtcg cgggtgttca taccgcagca gcccggggag
601 gcaacactgt catatgtgcc acccaagggc aggatgggga agcggtcttg gagggaaacg
661 agaaccttgg cacctattgt ggcgccccaa ttctgggccc tggcaaggcg cctaaactca
721 gcacgaaaac caagttttgg cgctcgtcac ctgatgcctt gccacctggc acatacgaac
781 ctgcctacct aggtggcaaa gaccccaggg tggaaaaagg tccctcccta caacaagtca
841 tgagagacca gttgaaaccc ttcacagagc ccaggggcaa accacctaga cctgtagttt
901 tggaggaagc caagaaaaca gtgatgaatg ttctagaaca gaccattgac cccgccaagc
961 catggtccta ttcccaggca tgcgcctcac ttgacaaaac cacctctagt ggcagtcccc
1021 accacgttaa gaaaaatgac cactggaatg gggagtcctt cactggccca cttgcggatc
1081 aggcatctaa agccaacctc atgtatgaac aggctaaaca tgtgcagccc gtgtacacgg
1141 ctgcgctcaa agatgagctt gttaagactg acaagatcta caagaaaata aagaagaggc
1201 tcctatgggg gtcggacctt ggcacaatga tcaggtgcgc cagggctttt ggtggtctca
1261 tggacagcat gaaggcaagc tgcatagccc tcccttgcag agtggggatg aacatgaatg
1321 aagatggccc cattatattt gacaagcatt ctaagtacag gtaccactat gatgctgact
1381 attctaggtg ggactcaacc cagcaaagga gcatcctttc tgctgctatg gaggtgatgg
1441 tgcggttttc tgctgaaccg gagttggcac aagtggttgc agaggacctt ctggccccta
1501 gccagcttga tgttggcgac tttgtcatct cagtccagga gggcttacca tcaggcgtcc
1561 cgtgcacatc acagtggaat tcaatagcac actggatcct gactttgagc gcaatggcag
1621 aagtttcagg tctctcacca gatgttgtcc aagctcactc ttgtttctca ttttatggag
1681 atgatgagat cgtcagcact gacatcaacc ttgaccctat gaagttaaca caaaagctca
1741 gggagtacgg cctggtcccc actcggcctg acaagactga aggtccactc gtcataactg
1801 aagacctcac tggcctgacg ttccttcgta ggtcgatcgc tcgggatcca gccggttggt
1861 ttgggaaatt ggaccaagac tcaatcctca ggcagttata ctggacaagg gggcctaacc
1921 atgagaaccc ctacgagagc atggtcccac actctcagcg ggccacacag ctcatggccc
1981 ttcttggtga ggcctcactg catggtcccc agttttacaa gaaagttagc aagatggtca
2041 tcaatgagat taagagtggt ggtctggagt tttacgtgcc cagacaagag gccatgttca
2101 ggtggatgag attctctgac ctcagcacgt gggagggcga tcgcaatctt gctcccgagg
2161 gtgtgaatga agatggcgtc gaatgacgct actccatctg atgatggtgc agccggcctc
2221 gtaccagaga tcaacaatga ggttatggct cttgaacccg tcgctggggc ctcccttgca
2281 gcccccgtag tcggtcaaca gaatataatt gatccctgga ttagaaataa ttttgttcaa
2341 gcccctgctg gtgaatttac agtttcccct agaaattctc ctggagagct cctacttgat
2401 ttggaattag gtcctgaact caatccctat cttgcacatt tggccaggat gtataatggg
2461 catgcaggag gaatggaagt gcagatagta ctggctggga atgcgttcac agctggtaag
2521 atcctatttg ctgccatccc tcctagcttc ccctatgaaa atttgtcacc cgctcaattg
2581 accatgtgcc cccatgtgat agtggatgta agacaattag aaccagtgct cttgccaatg
2641 ccagacataa gaaatgtttt ctatcactat aatcaaaata atggtcccaa acttaggctt
2701 gtagctatgc tttatacccc cctgagggct aacaactcag gtgatgacgt gttcacggtg
2761 tcttgccgcg ttttaacacg cccttctcca gatttccagt tcacctttct ggtcccacct
2821 acagttgaat ctaaaactaa gaacttcacc cttcccgtcc ttagagtctc agagatgaca
2881 aactcaaggt ttcccgtcgt tttggaccaa atgtacacaa gtaggaatga aagcatcata
2941 gtccaacccc aaaacggcag gtgcaccacc gacggtgagc tgcttggcac taccatctta
3001 cagtctgtgt ctatttgcaa ctttaaggga acaatgcagg cggagctgaa tgaagaacca
3061 cgatatcaat tacagctcac caacttggat gggtcaccta tagatccaac agatgacatg
3121 cctgcccctc ttggtacgcc agacttccag gccatgttat atggcgttgc aagccaacgc
3181 tcttccaggg acaatgccac cagggcacat gatgcacaga ttgacactgc gggtgacaca
3241 ttcgccccaa aaattggcca ggttcgattt aaatcaagct ctagagattt tgacctacat
3301 gaccccacaa aattcacacc tattggtgtc aatgttgatg atcagcaccc ctttaggcag
3361 tggtcccttc caaattatgg tggtcacctt gccctgaaca accatctagc cccagctgtg
3421 acaccactct ttcctggcga gcagattttg ttctttagat catacattcc aagcgctgga
3481 ggccacacag acggtgctat ggactgcttg ctgccccaag agtggataga gcacttctac
3541 caggaagcgg ccccttccca atctgacatt gcactggtaa ggttcattaa ccctgacaca
3601 ggaagagtgc tctttgaagc taagttgcac aaacaaggtt tccttacaat tgcagcatct
3661 ggagaccatc ctattgtgat gcccactaat ggatacttta ggtttgaagc ttgggttaac
3721 cccttctaca ctctcgcccc tgtgggaact gggtctgggc gcaggaggat tcaataatgg
3781 ctggagcttt ccttgcaggc ttggcaggtg acgttgtaac ctccagcttg ggctcacttg
3841 tgggcgctgg agccaacgcc atcaaccaga aagtggagta tgacttcaac agacagctcc
3901 aggaggcatc tttcaaacat gacaaggata tgctcaaagc ccaggttgca gcaacagcag
3961 gcctccaaca ggctatgata gacatcaagc gggaggcatt gaccgcaggc ggcttttccc
4021 ccgctgatgc tgcaagaggt gcagttaaag cgcccatgac acagatcctt gattggaatg
4081 gttctaggta ctgggcccct aactccatga agacaactgg ctattcaggc acatttgttt
4141 cccaaggtgt taaaaatttt ccccacttat ctaatcaaac tccaagcacc gttaagccca
4201 ttaaaccttt accatctaca tctagttcct ctagtgtgta tagttctccc tctactgccc
4261 cctcacaatc aacacaatca acaatgctgt ctgcagggac agggtcctcc agatccaaca
4321 ctgcgtccgc aaagacctcc acactgtcga ggacaagtga ttgggtcaga agtcaaaatg
4381 agatgcttgg cccgttcatg agtggcgcac tccaaaccgc ttatgtcaca ccaccatcga
4441 gtagggcctc atcacaaggg acggtctcga ccgtacccaa ggctgttttg gactcctgga
4501 ctcctatgtt taacacccat aggcagcctc tcttcgccca cttgcgtagg cgaggggagt
4561 cacagattta gtgaaaagga tgattag
//