Typing tool
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Typing tool
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Complete norovirus genomes
| PV416744 | GII.8 | |
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| GII.P8 |
ORF1: 1..5100
ORF2: 5081..6694
ORF3: 6694..7464
LOCUS PV416744 7464 bp RNA linear VRL 05-APR-2025
DEFINITION Norovirus GII isolate NV2022076 nonstructural polyprotein (ORF1)
and VP1 (ORF2) genes, complete cds; and VP2 (ORF3) gene, partial
cds.
ACCESSION PV416744
VERSION PV416744.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7464)
AUTHORS Zhang,Z.
TITLE Analysis of the Complete Genome Sequence of a GII.8[P8] Norovirus
Strain
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7464)
AUTHORS Zhang,Z.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2025) School of Public Health, Harbin Medical
University, Baojian Road No. 157, Harbin 150081, China
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.5.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7464
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="NV2022076"
/isolation_source="stool specimen"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China: Heilongjiang, Harbin"
/collection_date="May-2022"
/note="genotype: GII.P8_GII.8"
gene 1..5100
/gene="ORF1"
CDS 1..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="XQQ44732.1"
/translation="MKMASNDATAAAGNFNIANNSENTPPPIKEEASVLSNVKVGFKK
ILGAVPKQPKPPEVKTKDQPRVLVNGKALEVPPPPPNGEDVVYYNSKDDTVHGLPNLT
TVSCEGENLPYTVPPLSEREHRAAPEPLPGTILEMWDGEFYHYAIYVSGGKAIGVHKP
PAAISLATIELTPISLYWRPVYVPNYLVHPDTLKSLAGEKFPYTAFSNNCYNFCCWVL
DLKDSWLNRRSITRTTGFFKPYQSWNKKPLPTVDDGKIKKVANAVLCALGSLFSKPIK
DLIGKLKPLNFLNLLASCDWTFSGVVETVILVAELFGVFWTPPDVSNFIASLIGDFEL
QGPEDLAVELVPIIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVM
KWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTALLKDRDSLLTYMKTLDLEEEKA
RKLSTKSSSPDIVGTINAILARIAAARSLLHRAKEEMYSRPRPVVVMISGRPGVGKTH
MARHLAKSVAGTMSGDQRVGLIPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALALQE
LADTCPVTLNCDRIENKGKMFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEA
PTIEKAKKDFPGQPDMWKEHFKADFSHLKLTLAPQGGFDKNGNTPHGKGTMKTLTQGS
LTARVAGLVHERKDEFQLQGGELQIYNFDTNKVSAFRKLAADNNYGFLETMRVGSSLK
DVKTVEDLKCALKSVSFKECEIIYRNVKYRISSDGCGKVSIEKLADNNSQTTREIITA
VTRLRQARARYYISCFQDLVYTLLQVAGASFVINRIVKKFNWERWVKAPETDEPTPSN
GKPDTEEEWEIAPKDVDSEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRLREEKQG
RYTIEEYLQDRDRYYEELAVARATEENFCEEEEIKIRQRIFRPTKKQRKEERGVLGLV
TGADIRKRKPDDFQPKGRLWADDSRSVDYNEKIEFEAPPSVWSRIVPLGTGWGFWVSS
NLLITTTHVLPKGIKELFGVDIKQVQVHKSGEFCRFRFPKPVRPDVSGLVLEEGAPEG
TVCSVLIKRSTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGD
CGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGPDGEAVLEGGEDHGTYCGAPILA
LGKAPKLSTKTKFWRSSPDSLPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEP
RGRPPRPSVLEEAKKTVMNVLEQTIEPAKPWTYSQACASLDKTTSSGSPHHVRKNEHW
NGESFTGPLADQASKANLMYEEGKHMDPMYTAALKDELVKTDKIYKKIKKRLLWGSDL
GTMVRCARAFGGLLDSMKESCISLPCRVGMNINEDGPLIFEKHSKYTYHYDADYSRWD
STQQRAVLSAAMEVMVKFSAEPELAQVVAEDLLAPSRLDVGDFVISVQEGLPSGVPCT
SQWNSIAHWILTLSAMSEVSGLSPEVVQANSCFSFYGDDEIVSTDINLDPEKLTRKLR
EYGLVPTRPDKTEGPLVITQDLNGLTFLRRTIVRDPAGWFGKLDRDSILRQLYWTRGP
NHENPFESMIPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQE
AMFRWMRFSDLSTWEGDRNLAPENVNEDGVE"
mat_peptide 1..1005
/gene="ORF1"
/product="p48"
mat_peptide 1006..2103
/gene="ORF1"
/product="NTPase"
mat_peptide 2104..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6694
/gene="ORF2"
CDS 5081..6694
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XQQ44733.1"
/translation="MKMASNDAAPSNDGAAGLVPEINHEVMAIEPVAGASLAAPVVGQ
LNIIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAVIPPGFPYENLSPAQLTMCPHVVVDVRQLEPILLPMPD
IRNTFFHYNQSNGPKLRLVAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFEFNFLVPP
SVESKTKAFTLPILKISEMTNSRFPIPVDQMYTSRNENIVVQPQNGRVTLDGELQGTT
TLQPVSICGFRGTLQTRLADQPNYTYQAHLENLDGSPVDPTDEVPAPLGTPDFQAQLF
GVVSQRSSDNATRAHEARVNTNDPAFAPQIAQVRFKSPSHDFFDNEPIKFTPVGISVD
SENSYNQWLLPRYGGHLTNNTHLAPSVSPMFPGEQILFFRSFMPGASGHTDGAIDCLL
PQEWVAHFYQEAATAQTDVALIRFVNPDSGRVLFEGKLHKQGFITISNSGDHPIVMPA
NGYFRFEAWVNQFYSLAPVGTGSGRRRVQ"
gene 6694..>7464
/gene="ORF3"
CDS 6694..>7464
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XQQ44734.1"
/translation="MAGAFLAGLAGDVVTSGIGSLINAGANAVNQKIEYDFNRQLQEA
SFKHDKEMLNAQINATTKLQRDMIAIKQGVLTAGGFSPTDAARGSINAPTTKILDWNG
SRYWAPGSMRTTAYSGNFISQGVKQPTPIVRSVKPQVQQPPAPSSVYSVGSVRSQSTQ
STQLTGSGTVSRAPTPSTTTTLSRTSEWVRSQNDRLSPFMGGALQTAFITPPSSKASS
SSGTVSTVPREILDSWTPAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccgct gccgctggca actttaacat tgccaacaac
61 agtgaaaaca ctccccctcc cattaaggaa gaggcgagtg tcctatccaa cgtaaaagtt
121 ggattcaaga aaatattggg ggctgtgccc aagcagccca agccaccaga agtgaaaacc
181 aaagatcagc ccagggtgct ggtcaatggt aaggccttag aggtgccgcc tccaccaccg
241 aatggtgaag acgtggttta ctataacagc aaggatgaca ccgtgcacgg tctaccaaat
301 ctaacaacag tcagctgtga aggtgagaac cttccgtaca cagttccccc tctcagcgag
361 agagagcaca gggcagcacc agaaccatta cctggaacca tacttgagat gtgggatggt
421 gagttctacc attacgcgat atatgtctct ggtggcaagg ccataggggt gcacaaaccc
481 ccagctgcaa tcagccttgc cactatcgag ctaacaccta tatcgcttta ctggaggccc
541 gtttacgtcc ctaattactt ggtccaccct gacacactca agagcttagc tggtgaaaaa
601 ttcccataca ctgcatttag caacaattgt tacaacttct gttgctgggt tcttgacctg
661 aaggactcgt ggctcaaccg cagatcaata actagaacaa ccggtttctt caagccttat
721 caatcctgga acaagaaacc acttccgacg gtggatgatg ggaaaatcaa gaaagtcgcc
781 aatgcagttc tgtgtgccct tggttcacta ttctcaaaac ccattaagga cttgatcggg
841 aagctgaaac cactgaattt cttaaatctc ctcgcctcgt gcgactggac cttctccgga
901 gtggttgaga ccgtcatact agttgctgag ctgtttggtg tgttttggac cccccccgac
961 gtgtcgaatt tcattgcatc actcatcggg gactttgagc tgcagggtcc agaggattta
1021 gctgtggagt tggtgccgat catcatgggc ggtatcggaa tggtgctagg gttcaccgct
1081 gagaagatcg gccgaatgct atcatcagct gcatcaaccc ttagggcctg caaagaccta
1141 ggtaactacg cccttgacat acttaaattg gtcatgaagt ggttcttccc aaagaaagag
1201 gaaaaggcag agatggaaac cttaagggcc atagaggatg ctgtcttaga catggaggcg
1261 attgggaata accacctcac cgccctgttg aaagacaggg acagcctcct aacttacatg
1321 aagactctag accttgaaga agagaaggcg agaaagttgt ccacaaaatc atcgtcccct
1381 gacatcgtgg gcaccatcaa tgctatacta gccagaattg ccgcggctag gtctctcctg
1441 cacagagcca aagaagaaat gtacagcaga cctagacccg tcgtggtgat gatatcggga
1501 agaccagggg ttggtaaaac ccatatggct agacacctcg ccaagagtgt ggcaggcacc
1561 atgagcggtg accaaagggt aggcctcatc ccccgcaatg gagttgatca ctgggatgcc
1621 tacaggggag aacgagttgt cttgtgggac gactacggca tgggtaaccc agtgaaggat
1681 gccctcgctc tgcaagaact agcagacact tgtccagtca ccctcaattg tgacaggata
1741 gagaataagg ggaagatgtt tgatagcgag gtaataatta taacaactaa cttggccaac
1801 cccgccccgc ttgattatgt caactttgaa gcttgttccc gtagaatcga cttcctcgtc
1861 tacgcagaag ccccgaccat tgagaaggcg aagaaggatt ttcccgggca accagatatg
1921 tggaaggagc acttcaaagc agacttctct catctcaaac tcacactggc cccgcaaggt
1981 ggttttgaca agaacggcaa cacgccacat gggaagggga ccatgaagac tttaacacag
2041 ggttccctca cagcaagagt ggctgggctt gtgcacgaaa ggaaagatga gtttcagtta
2101 cagggtggag aactgcagat ctacaatttt gacacaaaca aggtgtcggc tttcaggaaa
2161 ctcgctgcag acaacaacta tgggttcctg gagacaatga gagtcggctc ctcactcaag
2221 gacgtcaaga cagtggaaga tcttaaatgt gcccttaaga gtgtcagttt caaagaatgt
2281 gaaataatct acaggaatgt caagtaccgc atatcatcgg acggttgcgg taaggtcagt
2341 atagagaaac tggcagataa caactcccag acaaccagag agattatcac ggccgtcact
2401 agactgcgac aggctcgtgc taggtactac atcagctgct ttcaagacct ggtctacaca
2461 ctcttgcagg ttgccggagc ctcatttgtc attaacagaa tagtcaagaa gttcaactgg
2521 gaacgatggg tcaaggctcc agaaacagat gaacccacac caagtaatgg caagcccgac
2581 actgaagagg aatgggagat cgcccccaaa gatgtggact ctgagggcaa gaaggggaag
2641 aacaagaagg gcaggggacg taagcacact gcattctcca gcaaagggct tagtgatgaa
2701 gagtatgatg aattcaagag actaagggaa gagaaacagg gccgctacac aattgaggag
2761 tacctccagg acagggaccg gtactatgaa gagctggcag tggcccgggc cactgaggag
2821 aacttctgtg aagaggaaga gataaagatc aggcaaagaa tattccgccc caccaaaaag
2881 cagaggaagg aggagcgcgg ggtcttggga ctcgtcacag gagcagacat caggaaacgg
2941 aaacccgatg acttccaacc aaaaggaaga ttgtgggcag atgattctag gagcgtcgac
3001 tacaatgaga agatcgagtt tgaagctcct cctagcgtct ggtcaagaat cgtcccgctt
3061 gggactggtt ggggattctg ggtctcatcc aacctactaa ttaccaccac acatgtgctg
3121 cccaaaggta ttaaagagct ctttggggtg gacatcaaac aagtccaagt tcacaaatca
3181 ggtgaatttt gcagattcag gttcccaaaa ccagtgagac cagatgtctc tggtttggtg
3241 ttagaagaag gggcccccga aggcacagtg tgctctgttc tcatcaagag gtctacagga
3301 gagatgattc cccttgcagt taggatgggc acccacgcct ctatgaagat tcaggggcgc
3361 actgttggcg gccagatggg catgttgctc actggagcca acgctaagaa catggatttg
3421 ggtaccggcc ccggggattg cggttgcccg tatatataca aaaggggcaa tgacatcgta
3481 gtggccggcg tccacacagc agcggcgcgc gggggcaaca cggtcatctg cgcaacccaa
3541 gggcctgatg gtgaggcagt gctagaaggg ggagaggacc acggcactta ctgcggagcc
3601 ccaatactgg cccttggtaa agcgccgaag cttagcacaa agaccaagtt ttggcgctca
3661 tctcctgatt ctcttccccc tgggacgtat gagccagctt accttggggg caaagacccc
3721 cgcgtggaga aagggccgtc actccaacaa gtgatgcgag accaacttaa acccttcaca
3781 gaacccaggg gcaggccacc taggccgtca gtgctggagg aagccaagaa gacagtcatg
3841 aatgtactgg agcagaccat agaaccagct aagccatgga cttactctca agcttgtgct
3901 tcattggata aaacaacatc cagtggcagc cctcaccatg tcaggaagaa tgaacactgg
3961 aacggggagt cttttactgg gcctcttgca gatcaagcct caaaagccaa cctgatgtat
4021 gaggaaggta aacacatgga ccccatgtac acagcagccc tcaaggacga gctggtgaaa
4081 actgacaaaa tctataagaa aatcaagaag aggttgttgt gggggtctga tctggggaca
4141 atggtgaggt gtgctcgagc gtttggaggg ctgctcgaca gtatgaaaga gagttgcatt
4201 tccttacctt gtagggttgg tatgaacata aatgaagatg gaccactcat atttgaaaaa
4261 cattccaaat acacctatca ctatgatgct gattactcta ggtgggactc aacacaacag
4321 agggccgtgc tgagtgcagc tatggaggta atggtgaagt tctccgctga gccggaactg
4381 gctcaggtgg ttgccgaaga ccttcttgca cccagccgtc ttgacgtggg tgactttgtc
4441 atctctgttc aagaaggtct cccatcgggt gtcccctgca cgtcacagtg gaactcaatt
4501 gctcactgga ttttgactct cagtgctatg tctgaggtct ctggtctttc ccctgaggtt
4561 gtgcaagcca actcctgttt ctcattctat ggggatgatg agatagtcag cacagatata
4621 aatttggacc cagaaaaact caccaggaaa ctgagggaat atggcctcgt cccaacaagg
4681 ccagataaaa ccgagggccc acttgtgatt acccaggatt tgaatggtct cacattcctg
4741 aggcgaacca tagtgcggga ccccgcaggc tggtttggaa aactggaccg tgattccatt
4801 ctaaggcagt tatattggac cagaggaccc aatcatgaga acccctttga aagcatgatt
4861 ccccactccc agagagctac ccaattaatg gcccttcttg gggaagcctc gttgcatggt
4921 ccccagtttt acaagaaggt gagtaaaatg gtcatcaatg agatcaagag tggtggtctg
4981 gagttttacg tgcccagaca ggaggccatg tttaggtgga tgagattttc agacctcagc
5041 acgtgggagg gcgatcgcaa tctggctccc gagaatgtga atgaagatgg cgtcgaatga
5101 cgcagctcca tcgaatgatg gcgcggctgg cctcgtacca gagatcaacc atgaggtcat
5161 ggccatagag cctgttgcag gagcctcttt agcagctcct gtcgtaggac aacttaatat
5221 aattgatccc tggattagaa ataattttgt acaagcccct gctggagaat tcactgtctc
5281 gcctaggaat gctccaggtg aatttttatt agatctagag ttaggtccag aattgaatcc
5341 ttatcttgct caccttgcac gcatgtataa tgggcatgca ggtggtatgg aggtgcagat
5401 agtgcttgct gggaatgcgt tcacagcggg caaaatactg tttgcagtca taccgcctgg
5461 atttccctat gaaaatttgt cacctgcaca attgaccatg tgcccgcatg tagtggtgga
5521 tgtgaggcag cttgaaccaa tcttgctgcc catgccagac atccgcaaca cattcttcca
5581 ttacaaccag agcaatgggc caaaacttag attagtagct atgctttata cacccctaag
5641 ggctaataat gctggtgatg atgtctttac agtttcctgc agggttttga ctcgcccatc
5701 accagatttt gaatttaatt ttcttgtccc cccatctgtt gaatctaaga ctaaagcttt
5761 taccctccca attcttaaga tatctgaaat gacaaattca agatttccca taccagttga
5821 ccagatgtac actagtagga atgaaaatat agttgttcaa ccacagaatg gtagggtgac
5881 acttgatgga gagctacagg gcacaaccac actccaaccg gtgtccattt gtggcttccg
5941 agggacgctg cagaccaggc tggcagatca accaaattac acataccaag cgcaccttga
6001 gaatttggac ggctcacccg tcgacccgac agatgaagtt ccagcccccc tggggacacc
6061 agattttcag gcccagctat ttggagttgt aagccaaagg agtagtgaca atgccaccag
6121 ggcacatgag gccagggtca acaccaacga tcctgccttc gcgccccaga tcgcccaggt
6181 gcgtttcaaa tcaccatccc acgacttctt tgacaatgaa cccatcaaat tcacaccagt
6241 tggaatcagt gttgatagtg aaaacagcta caaccaatgg ctcctaccca ggtatggtgg
6301 acacctgaca aacaacaccc atctggcccc ctctgtgtcc ccaatgttcc ctggtgaaca
6361 gattctcttc ttccgctcgt tcatgccagg tgccagtggt cacactgatg gtgctattga
6421 ctgcctttta ccacaagagt gggttgccca cttctatcag gaggccgcaa ctgcgcaaac
6481 agatgtggct ctgattagat ttgtgaaccc tgactcaggc agagtgttat ttgaagggaa
6541 gttacacaag cagggtttta taaccatctc caacagtggg gatcacccca ttgttatgcc
6601 tgctaatgga tacttcaggt ttgaggcatg ggtcaaccaa ttttactctc tcgcccccgt
6661 gggaactgga agtgggcgca gaagagttca ataatggctg gagcttttct tgctggtctg
6721 gctggtgatg tggtgacctc tggcatcggg tcgctcatca atgcaggtgc caatgcagtg
6781 aaccaaaaga ttgaatatga cttcaatagg caactccaag aagcttcttt taaacatgac
6841 aaggagatgt tgaatgctca aattaatgcc acaaccaaat tgcaaaggga catgattgcc
6901 attaagcagg gggttttgac cgctggcggc ttttccccca ctgatgctgc aaggggttcc
6961 atcaacgctc caaccaccaa aattcttgac tggaacggat ctaggtactg ggcaccagga
7021 tcaatgagaa caacagcgta ctctggcaat tttatatcac agggagttaa gcagcccaca
7081 cccattgtta ggtctgtgaa acctcaagta cagcaacctc ctgccccttc ttctgtttat
7141 tctgtaggtt ctgttaggtc acaatcaaca caatcaaccc aattaacagg gtcagggact
7201 gtatcaaggg cacccacccc ctcaacaacc acaacactgt ccagaacaag tgagtgggtg
7261 aggagccaga atgataggtt gagccccttt atgggaggcg cactccagac agctttcatc
7321 acgcccccat cgagtaaggc ttcatcctca tcaggaacag tctcaaccgt tcctagagaa
7381 attttggact cctggactcc tgcatttaac acgcgcaggc agccgctctt cgctcacata
7441 cgtaagcgag gggagtcacg ggct
//