Typing tool
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Typing tool
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Complete norovirus genomes
| PV394770 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5090
ORF2: 5071..6693
ORF3: 6693..7499
LOCUS PV394770 7554 bp RNA linear VRL 30-APR-2025
DEFINITION Norovirus GII isolate Hu/IN/2025/GII.4Sydney[P16]/NIV-2511452
nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION PV394770
VERSION PV394770.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7554)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Characterization of Norovirus detected from GBS and Non-GBS
patients from Pune, India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7554)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2025) Bioinformatics Group, ICMR-National
Institute of Virology, Dr. Ambedkar Road, Pune, Maharashtra 411001,
India
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench software v. 20
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7554
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/IN/2025/GII.4Sydney[P16]/NIV-2511452"
/isolation_source="Human fecal"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="India"
/collection_date="06-Feb-2025"
/note="genotype: GII.4Sydney[P16]"
gene <1..5090
/gene="ORF1"
CDS <1..5090
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XQO23140.1"
/translation="SLDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPA
PRDKPQKPPRPPTPELVKKIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVLQPDVA
NTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMA
RVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDSNCYAFCCWVLDLNDSWL
SRRMVQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIK
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAR
KVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPL
TLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVERAK
RDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERMDEFELQGPTITTFNFDRNRIAAFRQLAAENKYGLVDTMKIGNQLKGVKTMEE
LKQSIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKHA
RIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQSEPETKEEALKS
EDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSE
IRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFI
TSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVAT
VLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCP
YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGA
PKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRIKGGPSLQQVMRDQLKPFTEPRGKP
PRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGNPHHVRKNEFWNGET
FTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMV
RCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGL
KPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHED
PNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..986
/gene="ORF1"
/product="p48"
mat_peptide 987..2084
/gene="ORF1"
/product="NTPase"
mat_peptide 2085..2615
/gene="ORF1"
/product="p22"
mat_peptide 2616..3014
/gene="ORF1"
/product="VPg"
mat_peptide 3015..3557
/gene="ORF1"
/product="Pro"
mat_peptide 3558..5087
/gene="ORF1"
/product="RdRp"
gene 5071..6693
/gene="ORF2"
CDS 5071..6693
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XQO23141.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6693..7499
/gene="ORF3"
CDS 6693..7499
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XQO23142.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGALPGRANFRDAVPARGPSTRPS
NSSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cgtcgttaga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag gaaaaatctt
61 caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc ggggctaggc
121 ccaaacagcc tgccccgaga gacaaaccac aaaagccccc aagaccacca actcctgagt
181 tggtcaagaa gataccccct cctccaccta atggtgaaga agaagaagaa ccagtcatta
241 ggtatgaggt taagagcgga atctctggcc tgcccgagct cacaacagtc ctccaaccgg
301 atgtagccaa cacagcattc agtgttccac cactgagttt gagagaaaac agggaggcca
361 aggaaccgct aacaggggca atattagaga tgtgggatgg agagatttat cactatggtc
421 tatacgtgga gaaaggccta gtgttgggtg tgcacaaacc acctgcagcc ataagcatgg
481 caagagtgga actaacgccg ctgtcattat actggcgtgt agtgtacact ccccaatacc
541 tcatctcccc tgaaactctt aggaggctca acggagaggc tttcccttac accgcctttg
601 acagcaactg ctatgccttt tgttgctggg tgttagacct caacgactca tggcttagca
661 ggagaatggt gcagagaaca acgggcttct tcagacctta ccaagattgg aacagaaaac
721 ccctgcctac catggatgac tccaaaatca agaaggtggc aaacatattc ctatgttcat
781 tgtctacatt attcaccagg cccataaaag atctcatagg aaaaattaaa ccattaaaca
841 tactgaacat tctggcaacg tgtgactgga cgtttgctgg gatagtggag tctctaatac
901 tacttgctga actcttcgga gttttctgga cacccccaga tgtgtctgct atgatcgctc
961 ccttgctcgg ggactacgag ttgcaggggc cagaggacct cgccgttgag ctcgtgcctg
1021 tggtgatggg agggattggt ttggtgttgg gattcaccaa agagaaaatt ggcaaaatgt
1081 tgtcttcagc agcatcaaca ctcagggctt gcaaagatct tggtgcctat ggcttagaga
1141 tactaaaatt ggtcatgaag tggttcttcc caaagaaaga ggaggccaat gagctagcca
1201 tggtgagggc catagaggat gctgtactag accttgaggc aatagaaaat aaccacatga
1261 caaccttgtt gaaagacaaa gacagcttag caacatacat gaagacacta gacatggagg
1321 aggagaaagc cagaaggttg tccacaaaat ctgcatcccc tgacatagtt gggacaatca
1381 acgccctact ggctcgaata gcagcggcca ggtcattagt ccacagggcc aaggaagagc
1441 tatctagcag gataagacca gtagttgtta tgatatctgg caaaccagga ataggcaaaa
1501 cccatctggc cagggaggtg gcaagaaagg tggcttccac tcttacaggg gaccagagag
1561 tcggactcat tccaagaaac ggtgtggacc attgggatgc atacaaaggc gagagagtcg
1621 tgctgtggga cgactatggc atgagtaatc ccatccatga tgctcttcgc atacaagaat
1681 tggctgatac gtgtcccctc accttaaact gtgacagaat tgaaaataaa ggaaaagttt
1741 ttgacagtga agtcataata attacaacaa accttgccaa cccagcccct cttgattatg
1801 tcaactttga ggcttgttcc aggagaattg acttcctggt gtacgctgag gcaccagaag
1861 tagagagggc aaaacgggac ttccctggtc agccagatat gtggaaggac gcctttaagc
1921 cggacttttc acacatcaag ctgcaacttg cacctcaggg cggctttgac aagaatggca
1981 acaccccaca tgggaaagga gtgatgaaga ccctcactac cggctctctg atcgctcgtg
2041 catcaggcct actgcatgag aggatggatg aatttgaact ccaaggcccc acaatcacca
2101 ccttcaattt cgaccggaac agaatcgcag cattcagaca actggctgca gaaaacaagt
2161 atggattagt ggacaccatg aaaattggca atcaattaaa aggagtgaaa accatggaag
2221 aactcaaaca atcaatcagg aatgtgacca tcaagaggtg ccgaatcatt tacggtggct
2281 ctacatatga ccttgaatct gacggtaagg gcaaagtttt ggtggaaaag gtcaagaaca
2341 cttctgtaca gaccaacaac gagttggccg gggccttaca ccatctcaaa cacgcccgaa
2401 tcagatacta tgtcaaatgc gtgcaagaag cagtctattc catcatacaa attgccggcg
2461 ctgcgtttgt caccacgcgc attgcacgcc gcatgaacat acaagaactc tggtcgaagc
2521 ctcaattaga tcaaagtgaa ccagagacta aggaggaggc cctcaagtca gaagacgacg
2581 agtttgtcat atcttctaag gacatcaagg aggaaggaaa gaagggcaaa aataaaactg
2641 gccgtggcaa gaaacacact gcattctcca gcaagggctt gagtgatgag gagtatgatg
2701 agtataagag gataagagaa gagagaaatg ggaagtactc tatagaggag tatcttcaag
2761 acagagacag gtactatgag gagctcgcca ttgccaaggc cacggaagaa gacttctgtg
2821 aagaggagga gatcaaaatc cgtcagagaa ttttccgccc caccaggaaa caaagaaagg
2881 aagagagggc tacattaggg ctagtaacgg gttcagaaat tagaaaaaga aaccctgatg
2941 acttcaaacc caaagggaag ctgtgggccg acgacaacag aagcgttgac tacaatgaaa
3001 aactggactt tgaggccccc ccaagcatat ggtctaggat cgtaagcttt ggttctggct
3061 ggggcttctg ggtatcacca agcctgttta taacatcaac tcatgtgatc cccgcgggca
3121 taacagaagc atttggagtc cccatcaaac aaattcagat ccacaaatca ggtgaatttt
3181 gccggttcag gttcccaaaa ccaattagac cagatgttac aggaatgatc ttggaagaag
3241 gtgcgcctga gggtaccgtg gcaactgtgc tcatcaaacg ccccaccgga gagctcatgc
3301 ctcttgcagc cagaatggga acacacgcaa ccatgaaaat tcaaggccgc atggttggtg
3361 ggcagatggg tatgttgctc actggatcaa atgctaaagg aatggatttg gggacaaccc
3421 ctggtgactg tggctgcccc tacatctata aaagaggcaa cgattatata gtcattgggg
3481 tgcacactgc agcagcccgt ggtggaaaca ccgtcatctg tgccacccag ggaagtgagg
3541 gtgaggcaac ccttgagggt ggagatgaca aaggaacata ctgtggggca cccattctgg
3601 gccctggggg cgcaccaaaa ttgagcacca aaaccaaatt ttggaggtca tcgaacacgc
3661 cccttccacc agggacgtat gagcctgcct acctcggcgg ccgtgatcca cgtatcaagg
3721 gcgggccctc cttgcagcag gtaatgagag atcagttgaa gccattcact gaacccaggg
3781 gaaaacctcc aagaccaagt gtactagaag cagccaaaca aaccatcatc aatgtcctcg
3841 aacaaaccct ggatcctcca caaaaatgga catacgcaca ggcgtgtgcc tcacttgaca
3901 aaaccacctc cagtgggaac ccccatcacg tccgaaagaa tgaattctgg aatggtgaga
3961 cctttactgg aaaattggca gaccaagcat caaaagcaaa tctaatgttt gaggaaggga
4021 aacatatgac accagtgtat acagcagcac tcaaggacga gctagttaag actgagaaaa
4081 tctatggaaa gatcaagaag aggctgctct ggggctctga cttgtccacc atggtccggt
4141 gtgctaggtc atttggtggg ctcatggacg agatgaaggc acactgcata tcactcccag
4201 tccgagttgg catgaatatg aatgaagatg gcccaataat atttgagaaa cattccagat
4261 ataagtacca ctatgatgca gactactctc gttgggattc aacacaacag agggcagtac
4321 tggcagcagc cttggaaatc atggtcagat tctctgcaga accacaactg gcacaaatag
4381 tcgctgagga tctgttggcc cctagtgtag tagatgtagg agacttcaaa attacaataa
4441 atgaagggct cccctctggt gttccatgca cttctcaatg gaactccatt gcacactggc
4501 tgctaactct ctgtgccttg tctgaagtca ccaaactgtc ccctgacatt atacaggcaa
4561 attccatgtt ctcattttac ggtgatgacg agattgtcag caccgatata aaattagacc
4621 ctgaacagtt aaccgccaaa ttgaaggagt acggcctgaa accaacccgc ccagacaaaa
4681 ccgaggggcc cctgatcatc agtgaagatt tggacggact cactttcctc cgaaggacgg
4741 tgactcgtga cccagctggc tggtttggta aactggacca gagctccatt ttgaggcaga
4801 tgtactggac tagagggcca aatcatgaag accccaatga aacaatgata ccccattctc
4861 agagacccat acagctcatg gcactgcttg gtgaagcctc tcttcacgga ccctctttct
4921 atagtaaaat cagcaaattg gtcataactg aactcaagga aggtgggatg gacttttacg
4981 tgccaagaca ggaacccatg ttcaggtgga tgaggttttc tgacttgagc acgtgggagg
5041 gcgatcgcaa tctggctccc aattttgtga atgaagatgg cgtcgagtga cgccaaccca
5101 tctgatgggt ccgcagccaa cctcgtacca gaggtcaaca atgaggttat ggctttggag
5161 cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt aattgacccc
5221 tggattagaa ataattttgt acaagcccct ggtggggagt ttacagtgtc ccctagaaat
5281 gctccaggtg aaatactatg gagcgcgccc ttaggccctg acctaaatcc ctacctatcc
5341 catttggcca ggatgtacaa tggttatgca ggtggctttg aagtgcaggt aattctcgcg
5401 gggaatgcgt tcaccgctgg gaagattata tttgcagcag tcccaccaaa ttttccaact
5461 gaaggcttaa gccctagcca ggtcactatg ttcccccata taatagtaga tgttagacaa
5521 ttggaacctg tgctgatccc cttacccgat gttaggaata atttctatca ttacaaccag
5581 tcaaatgatt ccactattaa attgatagca atgttgtaca caccacttag ggctaataat
5641 gctggagatg atgttttcac agtctcgtgc cgagttctca cgagaccatc ccccgatttt
5701 gatttcatat tcttagtacc acccacagtt gagtcaagaa ctaaaccatt ctctgtccca
5761 gttttaactg ttgaggagat gaccaattca agattcccca tccctttgga aaagttgttc
5821 acaggcccca gcagtgcatt tgttgttcaa ccacaaaacg gcagatgcac aactgatggc
5881 gtgctcctag gcaccaccca actttctcct gtcaacatct gcaccttcag aggggatgtc
5941 acccacatca caggtagtca caactacact atgaatttgg cttctcaaaa ttggaacaac
6001 tacgacccaa cagaagaaat cccagctccc ctaggaactc cagattttgt ggggaagatt
6061 caaggcatgc tcacccaaac cacaaggaca gatggttcaa cacgcggtca caaagctaca
6121 gtgtacactg ggagcgccga ctttgctcca aaattgggta gagttcaatt tgaaactgac
6181 acaaaccatg attttgaagc caatcaaaac acaaagttca ccccagtcgg tgtcatccaa
6241 gacggtagca ccacacaccg aaacgaaccc caacagtggg tgcttccaag ttactcaggc
6301 agaaacactc acaatgtaca tttggccccc gctgtagccc ccacctttcc gggtgagcaa
6361 cttctcttct ttagatctac catgcccgga tgtagcgggt accccaacat ggatttggac
6421 tgtctactcc cccaggaatg ggtgcagtat ttctaccaag aggcagcccc agcacaatct
6481 gatgtggctc tgctaaggtt tgtgaatcca gacacaggta gggttttgtt tgagtgcaag
6541 cttcacaaat caggctatgt tacagtggct cacactggcc aacatgattt ggttatcccc
6601 cccaatggtt actttaggtt tgattcctgg gtcaaccagt tctacacgct tgcccccatg
6661 ggaaatggaa cggggcgtag acgtgcagta taatggctgg agctttcttt gctggattgg
6721 catctgatgt ccttggctcc ggacttggtt cccttatcaa tgctggggct ggggccatca
6781 accaaaaagt tgagtttgaa aataacagaa aattgcaaca agcatccttc caatttagca
6841 gcaatttgca acaggcttcc tttcaacatg ataaagagat gctccaagca caaattgagg
6901 ccaccaaaaa gctacaacag gaaatgatga gagttaagca ggcaatgctc ctggagggtg
6961 ggttctctga gacagatgcg gcccgcgggg caattaacgc ccccatgaca aaggctttgg
7021 actggagcgg cacaaggtac tgggctccag atgctagaat tacaacatac aatgcaggcc
7081 acttttccac ccctcaacca tcgggggcac tgccaggaag agctaatttt agggatgctg
7141 tccctgctcg gggaccctcc accagacctt ctaactcttc tactgccacc tctgtgtatt
7201 caaatcagac tgtttcaacg agacttggtt ctacagctgg ttctggaacc agtgtctcga
7261 gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaaatagg aacttgtctc
7321 ctttcatgag gggggcccac aatatatcat ttgtcacccc accatctagc agatcctcta
7381 gccaaggcac agtctcaacc gtgcctaaag aaattttgga ctcctggact ggcgctttca
7441 acacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca cgggtgtaat
7501 gtgaaaagac aaaactgatc attttctttt tcttttcttt agtgtctttt aaaa
//