Typing tool
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Typing tool
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Complete norovirus genomes
| PV394767 | GII.16 | |
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| GII.P16 |
ORF1: 1..5081
ORF2: 5062..6684
ORF3: 6684..7481
LOCUS PV394767 7481 bp RNA linear VRL 30-APR-2025
DEFINITION Norovirus GII isolate Hu/IN/2025/GII.16[P16]/NIV-2511017
nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION PV394767
VERSION PV394767.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7481)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Characterization of Norovirus detected from GBS and Non-GBS
patients from Pune, India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7481)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2025) Bioinformatics Group, ICMR-National
Institute of Virology, Dr. Ambedkar Road, Pune, Maharashtra 411001,
India
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench software v. 20
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7481
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/IN/2025/GII.16[P16]/NIV-2511017"
/isolation_source="Human fecal"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="India"
/collection_date="29-Jan-2025"
/note="genotype: GII.16 [P16]"
gene <1..5081
/gene="ORF1"
CDS <1..5081
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XQO23131.1"
/translation="ATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAPRD
KPQKPPRPPTPELVRRIPPPPPNGGEEEEPVIRYEVKSGISGLPELTTVPQPDVANTA
FSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVE
LTPLSLYWRVVYTPQYLISPDTLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRR
MVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLN
ILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEFQGPEDLAVEL
VPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEA
NELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDTEEEKARRLSTKSASP
DIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKVA
STLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLN
CDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDF
PGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLH
ERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLMDTMKVGNQLKGVKTMEELKQ
AIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKSTTVQTNNELAGALHHLKHARIR
YYVKCVQEAIYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQSDSELKEEALKPEDD
EFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEY
LQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRK
RNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITST
HVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLI
KRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIY
KRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKL
STKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRP
SVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGNPHHVRKNEFWNGETFIG
KLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCA
RSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAV
LAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIA
HWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPT
RPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHDDPNE
TMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMR
FSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..977
/gene="ORF1"
/product="p48"
mat_peptide 978..2075
/gene="ORF1"
/product="NTPase"
mat_peptide 2076..2606
/gene="ORF1"
/product="p22"
mat_peptide 2607..3005
/gene="ORF1"
/product="VPg"
mat_peptide 3006..3548
/gene="ORF1"
/product="Pro"
mat_peptide 3549..5078
/gene="ORF1"
/product="RdRp"
gene 5062..6684
/gene="ORF2"
CDS 5062..6684
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XQO23132.1"
/translation="MKMASSDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLARMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQSEPRMRLIAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFSVPVLTLNELTNSRFPVPIDALYTSPNDTIVVQPQNGRATIDGELLGTT
QLLPNGICSFRGRITAHLQEDNHLWHVQVTNLNGTPFDPTDDVPAPLGMPDFSGQIFG
VVSQRDLGSNNPANRSHDAVVPTYSAKFTPKLGSVQIGTWDTSDLQLQPVKFTPVGLN
EIGDGKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGLGNPYID
CLVPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHKEGFITVASTENRPVT
VPPNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
gene 6684..7481
/gene="ORF3"
CDS 6684..7481
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XQO23133.1"
/translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIAIRQGVLAAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGASRTTSFSGGFTNTTRARTVEPPKSSPPAHSASVSVSRPSSTVSSSSTRST
VVTNSSAASSTRSFVTRNSSRNTPQSVSFASSRTSDWVQNQNRMLEPYLKGSLQTAFV
SPPSSKASSNGTVSTVPKEILDSWTSAFNTRRQPLFAHLRRRGESQA"
ORIGIN
1 acgctaccgt tgccgttgct tgcaacaaca acaacgacaa ggaaaaatct tcaggtgaag
61 gcttatttac aaatatgtct tccaccttaa agaaagccct cggggctagg cccaaacagc
121 ctgccccgag agacaaacca caaaagcccc caagaccacc aactcccgag ttggtcagga
181 ggataccccc tcctccacct aatggcggag aggaagaaga gccagtcatt aggtatgaag
241 ttaagagcgg gatctctggc ctgcccgagc tcacaacagt cccccaaccg gacgtggcca
301 acacagcatt cagtgttcca ccactgagct tgagagaaaa tagggaggcc aaggaaccgc
361 taacaggggc aatattagag atgtgggatg gagagatata ccactatggc ctatacgtgg
421 agaaaggcct agtgttgggt gtacacaaac cacctgcagc cataagcatg gcaagagtgg
481 aactgacgcc gctgtcatta tactggcgtg tagtgtacac tccccaatac ctcatctccc
541 ctgatactct caggaggctc aacggagagg ctttccctta caccgccttt gacaacaact
601 gctatgcctt ttgttgctgg gtgttagacc ttaatgactc atggcttagc aggagaatgg
661 tgcagagaac aacgggcttc ttcagacctt accaagagtg gaacagaaaa cccctgccta
721 ccatggatga ctccaaaatc aagaaggtgg caaatatatt cctatgttca ttgtctacat
781 tatttaccag gcccataaaa gatctcatag gaaaaattaa acctttaaac atattgaaca
841 ttctggcaac gtgtgactgg acgtttgccg ggatagtgga gtctctgata ttacttgctg
901 aactcttcgg agttttctgg acacccccag atgtgtctgc tatgatcgct cccttactcg
961 gggactacga gttccaaggg ccagaagacc tcgccgttga actcgtgcct gtagtaatgg
1021 gagggattgg tttggtgttg ggattcacca aagagaaaat tggcaaaatg ttgtcttcag
1081 cagcatcaac actcagggct tgcaaagatc ttggtgccta tggcttagag atactcaaat
1141 tggtcatgaa gtggttcttc ccaaagaaag aggaggccaa tgagttagcc atggtgaggg
1201 ccatagagga tgctgtacta gatcttgagg caatagaaaa taaccacatg acaaccctgt
1261 tgaaagacaa agacagccta gcaacataca tgaaaacact agacacggag gaggagaaag
1321 ccagaaggtt atccacaaaa tctgcatccc ctgacatagt tgggacaatc aacgccctac
1381 tggctcgaat agcagcggcc agatcattag tccacagggc caaggaagag ctatccagca
1441 ggataagacc agtagtcgtt atgatatctg gtaaaccagg aataggcaaa actcatctgg
1501 ccagggaggt ggcaagaaaa gtggcttcca ctctcacagg ggaccagaga gtcgggctca
1561 taccaagaaa cggtgtggac cattgggatg catacaaagg cgagagagtc gtgctgtggg
1621 acgactatgg catgagtaat cccattcatg atgctcttcg catacaagaa ttggctgata
1681 cgtgtcccct taccttaaat tgtgacagaa ttgaaaacaa aggaaaagtt tttgacagtg
1741 aagtcataat aatcacaacg aaccttgcca atccagcccc acttgactac gttaactttg
1801 aagcctgttc caggagaatt gacttcctgg tgtacgctga ggcaccagaa gtagagaagg
1861 caaaacggga cttccctggt cagccagata tgtggaagga cgcctttaaa ccggactttt
1921 cacacatcaa gctgcaactt gcacctcagg gcggctttga caagaatggc aacaccccac
1981 atgggaaagg agtgatgaag accctcacta ccggctctct gatcgctcgt gcatcaggcc
2041 tactgcatga gaggatggat gaattcgaac tccaaggccc tacaatcacc accttcaatt
2101 tcgaccggaa cagaatcaca gcattcagac aactggctgc agaaaataag tatggattaa
2161 tggataccat gaaagttggt aatcaattaa aaggagtgaa aaccatggaa gaactcaaac
2221 aggcaatcag gaatgtgacc atcaagaggt gccggatcat ttacggtggc tccacatatg
2281 accttgaatc tgacggcaag ggcaaagttt tggtggaaaa ggtcaagagc accactgtgc
2341 agaccaacaa cgagctggcc ggggccttgc accatctcaa acacgcccgg atcaggtact
2401 acgtcaaatg tgtgcaagaa gcaatctatt ccatcataca aattgccggc gctgcgtttg
2461 tcaccacgcg cattgcacgc cgcatgaaca tacaggagct ctggtcgaag ccacaattag
2521 atcaaagtga ctcagagctt aaggaagagg ccctcaagcc agaggacgac gagttcgtca
2581 tatcttctaa ggacatcaag gaggaaggga agaagggcaa aaataaaact ggccgtggca
2641 agaaacacac tgcattttcc agtaagggct tgagtgatga agagtatgac gagtataaga
2701 ggataagaga agagagaaat gggaagtact ctatagagga gtatctccaa gacagagaca
2761 ggtattatga ggagctcgcc attgccaagg ccacggaaga agacttctgt gaagaggaag
2821 agatcaaaat ccgtcagaga attttccgtc ccaccaggaa acaaagaaag gaagagaggg
2881 ccacattggg gttagtaacg ggttcagaaa tcagaaagag aaaccctgat gacttcaaac
2941 ccaaagggaa gctgtgggcc gatgacaaca gaagtgttga ctacaatgaa aaactggact
3001 ttgaggcccc cccaagcata tggtctagga ttgtgagctt tggttctggc tggggcttct
3061 gggtttcacc aagcctgttc ataacatcaa ctcatgtaat ccccgcaggc ataacagaag
3121 catttggagt ctccatcaaa caaattcaga tccacaaatc aggtgaattt tgccgattca
3181 gattcccaaa accaattaga ccagatgtga caggaatgat cttggaagag ggtgcgcctg
3241 agggcaccgt ggcaactgtg ctcatcaaac gccccaccgg agagctcatg cctcttgcag
3301 ccagaatggg aacgcacgca accatgaaaa ttcaaggccg catggttggc gggcagatgg
3361 gcatgttgct cactggatca aatgctaaag gaatggattt gggaacaact cctggtgact
3421 gtggctgccc ctacatctat aaaagaggca atgactacat agtcattgga gtgcacactg
3481 cagcagcccg tggtggaaac accgtcatct gtgccacaca gggaagcgaa ggtgaggcaa
3541 ctcttgaggg tggagatgac aaaggaacat actgtggggc acccattctg ggccctgggg
3601 gcgcaccaaa attgagcacc aaaaccaaat tttggaggtc atcgaacacg ccccttccac
3661 cagggacgta tgagcctgcc tacctcggcg gccgtgatcc gcgtgtcaag ggtgggccct
3721 ccttgcaaca ggtaatgaga gatcagttga agccattcac tgaacccagg ggcaaacctc
3781 caagaccaag tgtgttggaa gcagccaaac aaaccatcat caatgtcctc gaacaaaccc
3841 tggaccctcc acaaaaatgg acatacgcgc aggcgtgtgc ctcacttgac aaaaccacct
3901 ccagcgggaa cccccatcac gtccgaaaga atgaattctg gaatggtgag acattcattg
3961 gaaaattggc agaccaagca tcaaaagcaa acctaatgtt tgaggaaggg aaacatatga
4021 caccagtgta cacagcagca ctcaaggacg agctagttaa gactgagaaa atctatggaa
4081 agatcaagaa gaggctgctc tggggctctg acttgtccac catgatccgg tgtgctaggt
4141 catttggtgg gctcatggac gagatgaagg cacactgcat atcactccca gtccgagttg
4201 gcatgaatat gaatgaagat ggtccaataa tatttgagaa acattccaga tataaatacc
4261 actatgatgc agactactct cgttgggatt caacacaaca gagggcagtg ctggcagcag
4321 ctttggaaat catggtcaga ttctctgcag aaccacaatt ggcacaaata gtcgctgagg
4381 atctgctggc ccctagtgta gtagatgtag gagactttaa aatcacaata aatgaagggc
4441 tcccctctgg tgttccatgc acttctcaat ggaactccat cgcacactgg ctactaactc
4501 tctgtgcctt gtctgaagtc accaaactgt cccctgacat tatacaggca aattccatgt
4561 tctcatttta cggtgatgac gagattgtca gcaccgacat aaaattagac cctgaacagt
4621 taaccgccaa gttgaaggag tacggcctga agccgacccg cccagacaaa accgagggac
4681 ccctgatcat cagtgaagat ttggacggac tcactttcct ccgaaggacg gtgacccgtg
4741 acccagctgg ctggtttggt aaactggacc agagctccat tttgaggcag atgtactgga
4801 ctagagggcc aaatcatgat gatcccaatg agacaatgat accccactct cagagaccca
4861 tacagctcat ggcactgctt ggtgaagcct ctcttcacgg accctctttc tatagtaaaa
4921 tcagtaaatt ggttataact gaactcaaag aaggtgggat ggacttttac gtgccaagac
4981 aggaacccat gttcaggtgg atgaggtttt ctgacttgag cacgtgggag ggcgatcgca
5041 atctggctcc caattttgtg aatgaagatg gcgtcgagtg acgccgctcc atctaatgat
5101 ggtgcagccg gtctcgtacc agaggtcaac aacgagacaa tggcacttga accagttgcg
5161 ggagcttcaa tcgctgcccc cttaactggt caaaacaatg taatagaccc ctggatcaga
5221 ttaaattttg tacaagcccc aaatggtgag tttacagtct ccccccgaaa ctcacccggt
5281 gaaattttgc taaatttaga attaggacct gaattgaatc catatttggc tcatttggca
5341 agaatgtata atggttatgc aggtggggtc gaggtgcagg tactgcttgc tggaaatgcg
5401 tttacagcag gcaaattagt atttgcagca gtcccccctc atttcccagt tgacaatttg
5461 agtcccggcc aaattaccat gttcccccat gtgatcattg atgttagaac ccttgaacct
5521 gttttgttac cactgcctga tgtaagaaat aatttctttc attataatca acagagtgaa
5581 cctcgcatga ggctcattgc tatgctttat acccccctta gatctaatgg ttcaggtgat
5641 gatgttttta ctgtgtcttg tagggtctta actagaccat cccctgattt tgatttcaat
5701 tatttggttc ccccaacagt tgagtctaaa accaaacctt tctcagtgcc agtgctgact
5761 cttaatgaac tgaccaattc ccgtttccct gtcccaattg atgcgttgta taccagcccc
5821 aatgatacaa ttgtggtcca acctcagaat gggagagcaa ccatcgacgg tgaattgctt
5881 ggcacgactc agctccttcc caatggcatc tgctcattca gaggaagaat tacagcacat
5941 ctgcaagaag acaatcactt gtggcacgtc caagtcacca acttgaatgg cacccctttt
6001 gacccaacag atgatgtgcc cgctcctttg ggcatgccag acttttctgg gcagatattt
6061 ggggtggtta gccaaaggga tttaggcagc aacaaccccg caaataggtc ccatgatgct
6121 gtagttccaa cctatagtgc aaagttcacc cctaaactcg gctcagtcca aattggaaca
6181 tgggacacca gtgatctaca actccagcct gtcaaattca cgcctgttgg tctcaatgaa
6241 attggagatg gcaaacattt tgaccaatgg gtgttgccaa attactctgg tgccctgggg
6301 ctcaacatgc acctggcccc tgctgtgtcc ccactttttc ctggagagag attgcttttc
6361 tttagatcat atataccctt aaaaggtggc cttggaaacc catacattga ttgccttgtg
6421 ccacaagaat ggatacaaca tttctatcaa gaatcagccc cagcacaatc ctcggtggct
6481 ctactgaggt atgtgaaccc agacacaggg cgcaccctgt ttgaggccaa attgcataag
6541 gaaggattca ttactgttgc tagtaccgaa aacagacctg tgactgtccc cccaaatggt
6601 tattttaggt ttgattcttg ggtaaaccag ttttactcac tcgcccccat gggaactggc
6661 aatgggcgca gaaggatgca gtaatggctg gagcttttat agcaggactt gctggtgaca
6721 ttgtcaccaa tagtattggc tcacttgtga acgctggagc taatgctata aaccaaaagg
6781 ttgattttga gaacaacaaa cagttgcaac aggcttcttt taatcatgat aaagagatgc
6841 tgcaagccca aatccaagcc accaagcagc tgcaggctga catgatagca atcagacaag
6901 gagttttggc tgcgggcggc ttctccccta ctgatgctgc aagaggtgcg gttaacgcac
6961 caatgaccca ggtgttggac tggaatggaa ctagatactg ggcccctggg gcgtcaagga
7021 ccaccagctt ttctggtggg ttcaccaaca ccacccgtgc cagaactgtt gaaccaccca
7081 aaagttcccc ccctgctcat agtgcttcag tttctgtttc taggcccagt tctactgtct
7141 catcttcttc tactcggtcg acagtagtta ccaattcttc tgctgcctct tctactaggt
7201 cttttgtaac tagaaattca tcccgcaata ctcctcaatc tgtctccttt gcttcttcgc
7261 gtactagtga ttgggtacag aatcaaaata gaatgctgga gccatatctg aagggatctc
7321 tgcaaacagc ttttgtgtca ccgccctcca gtaaggcttc cagtaatggc actgtctcaa
7381 ctgtgccaaa agaaattttg gactcctgga catctgcgtt taacacccgc agacagccgc
7441 tcttcgcaca tctccgtcgg aggggggagt cacaagctta g
//