Typing tool
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Typing tool
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Complete norovirus genomes
| PV394766 | GII.16 | |
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|---|---|---|---|
| GII.P16 |
ORF1: 1..5091
ORF2: 5072..6694
ORF3: 6694..7491
LOCUS PV394766 7506 bp RNA linear VRL 30-APR-2025
DEFINITION Norovirus GII isolate Hu/IN/2025/GII.16[P16]/NIV-2510854
nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION PV394766
VERSION PV394766.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7506)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Characterization of Norovirus detected from GBS and Non-GBS
patients from Pune, India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7506)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2025) Bioinformatics Group, ICMR-National
Institute of Virology, Dr. Ambedkar Road, Pune, Maharashtra 411001,
India
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench software v. 20
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7506
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/IN/2025/GII.16[P16]/NIV-2510854"
/isolation_source="Human fecal"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="India"
/collection_date="28-Jan-2025"
/note="genotype: GII.16 [P16]"
gene <1..5091
/gene="ORF1"
CDS <1..5091
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="XQO23128.1"
/translation="ASSDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDKPQKPPRPPTPELVRRIPPPPPNGGEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELTPLSLYWRVVYTPQYLISPDTLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEFQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELVDTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLMDTMKVGNQLKGVKTME
ELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKSTTVQTNNELAGALHHLKH
ARIRYYVKCVQEAIYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQSDSELKEEALK
PEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGNPHHVRKNEFWNGE
TFIGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG
LKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHD
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..987
/gene="ORF1"
/product="p48"
mat_peptide 988..2085
/gene="ORF1"
/product="NTPase"
mat_peptide 2086..2616
/gene="ORF1"
/product="p22"
mat_peptide 2617..3015
/gene="ORF1"
/product="VPg"
mat_peptide 3016..3558
/gene="ORF1"
/product="Pro"
mat_peptide 3559..5088
/gene="ORF1"
/product="RdRp"
gene 5072..6694
/gene="ORF2"
CDS 5072..6694
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XQO23129.1"
/translation="MKMASSDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLARMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQSEPRMRLIAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFSVPVLTLNELTNSRFPVPIDALYTSPNDTIVVQPQNGRATIDGELLGTT
QLLPNGICSFRGRITAHLQEDNHLWHVQVTNLNGTPFDPTDDVPAPLGMPDFSGQIFG
VVSQRDLGSNNPANRSHDAVVPTYSAKFTPKLGSVQIGTWDTSDLQLQPVKFTPVGLN
EIGDGKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGLGNPYID
CLVPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHKEGFITVASTENRPVT
VPPNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
gene 6694..7491
/gene="ORF3"
CDS 6694..7491
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XQO23130.1"
/translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIAIRQGVLAAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGASRTTSFSGGFTNTTRARTVEPPKSSPPAHSASVSVSRPSSTVSSSSTRST
VVTNSSAASSTRSFVTRNSSRNTPQSVSFASSRTSDWVQNQNRMLEPYLKGSLQTAFV
SPPSSKASSNGTVSTVPKELLDSWTSAFNTRRQPLFAHLRRRGESQA"
ORIGIN
1 gcgtcgtcag acgctaccgt tgccgttgct tgcaacaaca acaacgacaa ggaaaaatct
61 tcaggtgaag gcttatttac aaatatgtct tccaccttaa agaaagccct cggggctagg
121 cccaaacagc ctgccccgag agacaaacca caaaagcccc caagaccacc aactcccgag
181 ttggtcagga ggataccccc tcctccacct aatggcggag aggaagaaga gccagtcatt
241 aggtatgaag ttaagagcgg gatctctggc ctgcccgagc tcacaacagt cccccaaccg
301 gacgtggcca acacagcatt cagtgttcca ccactgagct tgagagaaaa tagggaggcc
361 aaggaaccgc taacaggggc aatattagag atgtgggatg gagagatata ccactatggc
421 ctatacgtgg agaaaggcct agtgttgggt gtacacaaac cacctgcagc cataagcatg
481 gcaagagtgg aactgacgcc gctgtcatta tactggcgtg tagtgtacac tccccaatac
541 ctcatctccc ctgatactct caggaggctc aacggagagg ctttccctta caccgccttt
601 gacaacaact gctatgcctt ttgttgctgg gtgttagacc ttaatgactc atggcttagc
661 aggagaatgg tgcagagaac aacgggcttc ttcagacctt accaagagtg gaacagaaaa
721 cccctgccta ccatggatga ctccaaaatc aagaaggtgg caaatatatt cctatgttca
781 ttgtctacat tatttaccag gcccataaaa gatctcatag gaaaaattaa acctttaaac
841 atattgaaca ttctggcaac gtgtgactgg acgtttgccg ggatagtgga gtctctgata
901 ttacttgctg aactcttcgg agttttctgg acacccccag atgtgtctgc tatgatcgct
961 cccttactcg gggactacga gttccaaggg ccagaagacc tcgccgttga actcgtgcct
1021 gtagtaatgg gagggattgg tttggtgttg ggattcacca aagagaaaat tggcaaaatg
1081 ttgtcttcag cagcatcaac actcagggct tgcaaagatc ttggtgccta tggcttagag
1141 atactcaaat tggtcatgaa gtggttcttc ccaaagaaag aggaggccaa tgagttagcc
1201 atggtgaggg ccatagagga tgctgtacta gatcttgagg caatagaaaa taaccacatg
1261 acaaccctgt tgaaagacaa agacagccta gcaacataca tgaaaacact agacatggag
1321 gaggagaaag ccagaaggtt atccacaaaa tctgcatccc ctgacatagt tgggacaatc
1381 aacgccctac tggctcgaat agcagcggcc agatcattag tccacagggc caaggaagag
1441 ctatccagca ggataagacc agtagtcgtt atgatatctg gtaaaccagg aataggcaaa
1501 actcatctgg ccagggaggt ggcaagaaaa gtggcttcca ctctcacagg ggaccagaga
1561 gtcgggctca taccaagaaa cggtgtggac cattgggatg catacaaagg cgagagagtc
1621 gtgctgtggg acgactatgg catgagtaat cccattcatg atgctcttcg catacaagaa
1681 ttggttgata cgtgtcccct taccttaaat tgcgacagaa ttgaaaacaa aggaaaagtt
1741 tttgacagtg aagtcataat aatcacaacg aaccttgcca atccagcccc acttgactac
1801 gttaactttg aagcctgttc caggagaatt gacttcctgg tgtacgctga ggcaccagaa
1861 gtagagaagg caaaacggga cttccctggt cagccagata tgtggaagga cgcctttaaa
1921 ccggactttt cacacatcaa gctgcaactt gcacctcagg gcggctttga caagaatggc
1981 aacaccccac atgggaaagg agtgatgaag accctcacta ccggctctct gatcgctcgt
2041 gcatcaggcc tactgcatga gaggatggat gaattcgaac tccaaggccc tacaatcacc
2101 accttcaatt tcgaccggaa cagaatcaca gcattcagac aactggctgc agaaaataag
2161 tatggattaa tggataccat gaaagttggt aatcaattaa aaggagtgaa aaccatggaa
2221 gaactcaaac aggcaatcag gaatgtgacc atcaagaggt gccggatcat ttacggtggc
2281 tccacatatg accttgaatc tgacggcaag ggcaaagttt tggtggaaaa ggtcaagagc
2341 accactgtgc agaccaacaa cgagctggcc ggggccttgc accatctcaa acacgcccgg
2401 atcaggtact acgtcaaatg tgtgcaagaa gcaatctatt ccatcataca aattgccggc
2461 gctgcgtttg tcaccacgcg cattgcacgc cgcatgaaca tacaggagct ctggtcgaag
2521 ccacaattag atcaaagtga ctcagagctt aaggaagagg ccctcaagcc agaggacgac
2581 gagttcgtca tatcttctaa ggacatcaag gaggaaggga agaagggcaa aaataaaact
2641 ggccgtggca agaaacacac tgcattttcc agtaagggct tgagtgatga agagtatgac
2701 gagtataaga ggataagaga agagagaaat gggaagtact ctatagagga gtatctccaa
2761 gacagagaca ggtattatga ggagctcgcc attgccaagg ccacggaaga agacttctgt
2821 gaagaggaag agatcaaaat ccgtcagaga attttccgtc ccaccaggaa acaaagaaag
2881 gaagagaggg ccacattggg gttagtaacg ggttcagaaa tcagaaagag aaaccctgat
2941 gacttcaaac ccaaagggaa gctgtgggcc gatgacaaca gaagtgttga ctacaatgaa
3001 aaactggact ttgaggcccc cccaagcata tggtctagga ttgtgagctt tggttctggc
3061 tggggcttct gggtttcacc aagcctgttc ataacatcaa ctcatgtaat ccccgcaggc
3121 ataacagaag catttggagt ctccatcaaa caaattcaga tccacaaatc aggtgaattt
3181 tgccgattca gattcccaaa accaattaga ccagatgtga caggaatgat cttggaagag
3241 ggtgcgcctg agggcaccgt ggcaactgtg ctcatcaaac gccccaccgg agagctcatg
3301 cctcttgcag ccagaatggg aacgcacgca accatgaaaa ttcaaggccg catggttggc
3361 gggcagatgg gcatgttgct cactggatca aatgctaaag gaatggattt gggaacaact
3421 cctggtgact gtggctgccc ctacatctat aaaagaggca atgactacat agtcattgga
3481 gtgcacactg cagcagcccg tggtggaaac accgtcatct gtgccacaca gggaagcgaa
3541 ggtgaggcaa ctcttgaggg tggagatgac aaaggaacat actgtggggc acccattctg
3601 ggccctgggg gcgcaccaaa attgagcacc aaaaccaaat tttggaggtc atcgaacacg
3661 ccccttccac cagggacgta tgagcctgcc tacctcggcg gccgtgatcc gcgtgtcaag
3721 ggtgggccct ccttgcaaca ggtaatgaga gatcagttga agccattcac tgaacccagg
3781 ggcaaacctc caagaccaag tgtgttggaa gcagccaaac aaaccatcat caatgtcctc
3841 gaacaaaccc tggaccctcc acaaaaatgg acatacgcgc aggcgtgtgc ctcacttgac
3901 aaaaccacct ccagcgggaa cccccatcac gtccgaaaga atgaattctg gaatggtgag
3961 acattcattg gaaaattggc agaccaagca tcaaaagcaa acctaatgtt tgaggaaggg
4021 aaacatatga caccagtgta cacagcagca ctcaaggacg agctagttaa gactgagaaa
4081 atctatggaa agatcaagaa gaggctgctc tggggctctg acttgtccac catgatccgg
4141 tgtgctaggt catttggtgg gctcatggac gagatgaagg cacactgcat atcactccca
4201 gtccgagttg gcatgaatat gaatgaagat ggtccaataa tatttgagaa acattccaga
4261 tataaatacc actatgatgc agactactct cgttgggatt caacacaaca gagggcagtg
4321 ctggcagcag ctttggaaat catggtcaga ttctctgcag aaccacaatt ggcacaaata
4381 gtcgctgagg atctgctggc ccctagtgta gtagatgtag gagactttaa aatcacaata
4441 aatgaagggc tcccctctgg tgttccatgc acttctcaat ggaactccat cgcacactgg
4501 ctactaactc tctgtgcctt gtctgaagtc accaaactgt cccctgacat tatacaggca
4561 aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgacat aaaattagac
4621 cctgaacagt taaccgccaa gttgaaggag tacggcctga agccgacccg cccagacaaa
4681 accgagggac ccctgatcat cagtgaagat ttggacggac tcactttcct ccgaaggacg
4741 gtgacccgtg acccagctgg ctggtttggt aaactggacc agagctccat tttgaggcag
4801 atgtactgga ctagagggcc aaatcatgat gatcccaatg agacaatgat accccactct
4861 cagagaccca tacagctcat ggcactgctt ggtgaagcct ctcttcacgg accctctttc
4921 tatagtaaaa tcagtaaatt ggttataact gaactcaaag aaggtgggat ggacttttac
4981 gtgccaagac aggaacccat gttcaggtgg atgaggtttt ctgacttgag cacgtgggag
5041 ggcgatcgca atctggctcc caattttgtg aatgaagatg gcgtcgagtg acgccgctcc
5101 atctaatgat ggtgcagccg gtctcgtacc agaggtcaac aacgagacaa tggcacttga
5161 accagttgcg ggagcttcaa tcgctgcccc cttaactggt caaaacaatg taatagaccc
5221 ctggatcaga ttaaattttg tacaagcccc aaatggtgag tttacagtct ccccccgaaa
5281 ctcacccggt gaaattttgc taaatttaga attaggacct gaattgaatc catatttggc
5341 tcatttggca agaatgtata atggttatgc aggtggggtc gaggtgcagg tactgcttgc
5401 tggaaatgcg tttacagcag gcaaattagt atttgcagca gtcccccctc atttcccagt
5461 tgacaatttg agtcccggcc aaattaccat gttcccccat gtgatcattg atgttagaac
5521 ccttgaacct gttttgttac cactgcctga tgtaagaaat aatttctttc attataatca
5581 acagagtgaa cctcgcatga ggctcattgc tatgctttat acccccctta gatctaatgg
5641 ttcaggtgat gatgttttta ctgtgtcttg tagggtctta actagaccat cccctgattt
5701 tgatttcaat tatttggttc ccccaacagt tgagtctaaa accaaacctt tctcagtgcc
5761 agtgctgact cttaatgaac tgaccaattc ccgtttccct gtcccaattg atgcgttgta
5821 taccagcccc aatgatacaa ttgtggtcca acctcagaat gggagagcaa ccatcgacgg
5881 tgaattgctt ggcacgactc agctccttcc caatggcatc tgctcattca gaggaagaat
5941 tacagcacat ctgcaagaag acaatcactt gtggcacgtc caagtcacca acttgaatgg
6001 cacccctttt gacccaacag atgatgtgcc cgctcctttg ggcatgccag acttttctgg
6061 gcagatattt ggggtggtta gccaaaggga tttaggcagc aacaaccccg caaataggtc
6121 ccatgatgct gtagttccaa cctatagtgc aaagttcacc cctaaactcg gctcagtcca
6181 aattggaaca tgggacacca gtgatctaca actccagcct gtcaaattca cgcctgttgg
6241 tctcaatgaa attggagatg gcaaacattt tgaccaatgg gtgttgccaa attactctgg
6301 tgccctgggg ctcaacatgc acctggcccc tgctgtgtcc ccactttttc ctggagagag
6361 attgcttttc tttagatcat atataccctt aaaaggtggc cttggaaacc catacattga
6421 ttgccttgtg ccacaagaat ggatacaaca tttctatcaa gaatcagccc cagcacaatc
6481 ctcggtggct ctactgaggt atgtgaaccc agacacaggg cgcaccctgt ttgaggccaa
6541 attgcataag gaaggattca ttactgttgc tagtaccgaa aacaggcctg tgactgtccc
6601 cccaaatggt tattttaggt ttgattcttg ggtaaaccag ttttactcac tcgcccccat
6661 gggaactggc aatgggcgca gaaggatgca gtaatggctg gagcttttat agcaggactt
6721 gctggtgaca ttgtcaccaa tagtattggc tcacttgtga acgctggagc taatgctata
6781 aaccaaaagg ttgattttga gaacaacaaa cagttgcaac aggcttcttt taatcatgat
6841 aaagagatgc tgcaagccca aatccaagcc accaagcagc tgcaggctga catgatagca
6901 atcagacaag gagttttggc tgcgggcggc ttctccccta ctgatgctgc aagaggtgcg
6961 gttaacgcac caatgaccca ggtgttggac tggaatggaa ctagatactg ggcccctggg
7021 gcgtcaagga ccaccagctt ttctggtggg ttcaccaaca ccacccgtgc cagaactgtt
7081 gaaccaccca aaagttcccc ccctgctcat agtgcttcag tttctgtttc taggcccagt
7141 tctactgtct catcttcttc tactcggtcg acagtagtta ccaattcttc tgctgcctct
7201 tctactaggt cttttgtaac tagaaattca tcccgcaata ctcctcaatc tgtctccttt
7261 gcttcttcgc gtactagtga ttgggtacag aatcaaaata gaatgctgga gccatatctg
7321 aagggatctc tgcaaacagc ttttgtgtca ccgccctcca gtaaggcttc cagtaatggc
7381 actgtctcaa ctgtgccaaa agaacttttg gactcctgga catctgcgtt taacacccgc
7441 agacagccgc tcttcgcaca tctccgtcgg aggggggagt cacaagctta gtgaaaagac
7501 tgtgat
//