Typing tool
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Typing tool
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Complete norovirus genomes
| PV394763 | GII.16 | |
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| GII.P16 |
ORF1: 1..5085
ORF2: 5066..6688
ORF3: 6688..7442
LOCUS PV394763 7442 bp RNA linear VRL 30-APR-2025
DEFINITION Norovirus GII isolate Hu/IN/2025/GII.16[P16]/NIV-2510836
nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2)
gene, complete cds; and VP2 (ORF3) gene, partial cds.
ACCESSION PV394763
VERSION PV394763.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7442)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Characterization of Norovirus detected from GBS and Non-GBS
patients from Pune, India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7442)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2025) Bioinformatics Group, ICMR-National
Institute of Virology, Dr. Ambedkar Road, Pune, Maharashtra 411001,
India
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench software v. 20
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7442
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/IN/2025/GII.16[P16]/NIV-2510836"
/isolation_source="Human fecal"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="India"
/collection_date="28-Jan-2025"
/note="genotype: GII.16 [P16]"
gene <1..5085
/gene="ORF1"
CDS <1..5085
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="XQO23119.1"
/translation="RDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAP
RDKPQKPPRPPTPELVRRIPPPPPNGGEEEEPVIRYEVKSGISGLPELTTVPQPDVAN
TAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMAR
VELTPLSLYWRVVYTPQYLISPDTLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEFQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDTEEEKARRLSTKSA
SPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARK
VASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLT
LNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLMDTMKVGNQLKGVKTMEEL
KQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKSTTVQTNNELAGALHHLKHAR
IRYYVKCVQEAIYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQSDSELKEEALKPE
DDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEI
RKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFIT
STHVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATV
LIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPY
IYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAP
KLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
RPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGNPHHVRKNEFWNGETF
IGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIR
CARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQR
AVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLK
PTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHDDP
NETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..981
/gene="ORF1"
/product="p48"
mat_peptide 982..2079
/gene="ORF1"
/product="NTPase"
mat_peptide 2080..2610
/gene="ORF1"
/product="p22"
mat_peptide 2611..3009
/gene="ORF1"
/product="VPg"
mat_peptide 3010..3552
/gene="ORF1"
/product="Pro"
mat_peptide 3553..5082
/gene="ORF1"
/product="RdRp"
gene 5066..6688
/gene="ORF2"
CDS 5066..6688
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XQO23120.1"
/translation="MKMASSDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLARMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQSEPRMRLIAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFSVPVLTLNELTNSRFPVPIDALYTSPNDTIVVQPQNGRATIDGELLGTT
QLLPNGICSFRGRITAHLQEDNHLWHVQVTNLNGTPFDPTDDVPAPLGMPDFSGQIFG
VVSQRDLGSNNPANRSHDAVVPTYSAKFTPKLGSVQIGTWDTSDLQLQPVKFTPVGLN
EIGDGKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGFGNPYID
CLVPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHKEGFITVASTENRPVT
VPPNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
gene 6688..>7442
/gene="ORF3"
CDS 6688..>7442
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XQO23121.1"
/translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIAIRQGVLAAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGASRTTSFSGGFTNTTRARTVEPPKSSPPAHSASVSVSRPSTNSSAASSTRS
FVTRNSSRNTPQSVSFASSRTSDWVQNQNRMLEPYLKGSLQTAFVSPPSSKASSNGTV
STVPKEILDSWTSAFNTRRQPLFAHLRRRGESQA"
ORIGIN
1 cgtgacgcta ccgttgccgt tgcttgcaac aacaacaacg acaaggaaaa atcttcaggt
61 gaaggcttat ttacaaatat gtcttccacc ttaaagaaag ccctcggggc taggcccaaa
121 cagcctgccc cgagagacaa accacaaaag cccccaagac caccaactcc cgagttggtc
181 aggaggatac cccctcctcc acctaatggc ggagaggaag aagagccagt cattaggtat
241 gaagttaaga gcgggatctc tggcctgccc gagctcacaa cagtccccca accggacgtg
301 gccaacacag cattcagtgt tccaccactg agcttgagag aaaataggga ggccaaggaa
361 ccgctaacag gggcaatatt agagatgtgg gatggagaga tataccacta tggcctatac
421 gtggagaaag gcctagtgtt gggtgtacac aaaccacctg cagccataag catggcaaga
481 gtggaactga cgccgctgtc attatactgg cgtgtagtgt acactcccca atacctcatc
541 tcccctgata ctctcaggag gctcaacgga gaggctttcc cttacaccgc ctttgacaac
601 aactgctatg ccttttgttg ctgggtgtta gaccttaatg actcatggct tagcaggaga
661 atggtgcaga gaacaacggg cttcttcaga ccttaccaag agtggaacag aaaacccctg
721 cctaccatgg atgactccaa aatcaagaag gtggcaaata tattcctatg ttcattgtct
781 acattattta ccaggcccat aaaagatctc ataggaaaaa ttaaaccttt aaacatattg
841 aacattctgg caacgtgtga ctggacgttt gccgggatag tggagtctct gatattactt
901 gctgaactct tcggagtttt ctggacaccc ccagatgtgt ctgctatgat cgctccctta
961 ctcggggact acgagttcca agggccagaa gacctcgccg ttgaactcgt gcctgtagta
1021 atgggaggga ttggtttggt gttgggattc accaaagaga aaattggcaa aatgttgtct
1081 tcagcagcat caacactcag ggcttgcaaa gatcttggtg cctatggctt agagatactc
1141 aaattggtca tgaagtggtt cttcccaaag aaagaggagg ccaatgagtt agccatggtg
1201 agggccatag aggatgctgt actagatctt gaggcaatag aaaataacca catgacaacc
1261 ctgttgaaag acaaagacag cctagcaaca tacatgaaaa cactagacac ggaggaggag
1321 aaagccagaa ggttatccac aaaatctgca tcccctgaca tagttgggac aatcaacgcc
1381 ctactggctc gaatagcagc ggccagatca ttagtccaca gggccaagga agagctatcc
1441 agcaggataa gaccagtagt cgttatgata tctggtaaac caggaatagg caaaactcat
1501 ctggccaggg aggtggcaag aaaagtggct tccactctca caggggacca gagagtcggg
1561 ctcataccaa gaaacggtgt ggaccattgg gatgcataca aaggcgagag agtcgtgctg
1621 tgggacgact atggcatgag taatcccatt catgatgctc ttcgcataca agaattggct
1681 gatacgtgtc cccttacctt aaattgtgac agaattgaaa acaaaggaaa agtttttgac
1741 agtgaagtca taataatcac aacgaacctt gccaatccag ccccacttga ctacgttaac
1801 tttgaagcct gttccaggag aattgacttc ctggtgtacg ctgaggcacc agaagtagag
1861 aaggcaaaac gggacttccc tggtcagcca gatatgtgga aggacgcctt taaaccggac
1921 ttttcacaca tcaagctgca acttgcacct cagggcggct ttgacaagaa tggcaacacc
1981 ccacatggga aaggagtgat gaagaccctc actaccggct ctctgatcgc tcgtgcatca
2041 ggcctactgc atgagaggat ggatgaattc gaactccaag gccctacaat caccaccttc
2101 aatttcgacc ggaacagaat cacagcattc agacaactgg ctgcagaaaa taagtatgga
2161 ttaatggata ccatgaaagt tggtaatcaa ttaaaaggag tgaaaaccat ggaagaactc
2221 aaacaggcaa tcaggaatgt gaccatcaag aggtgccgga tcatttacgg tggctccaca
2281 tatgaccttg aatctgacgg caagggcaaa gttttggtgg aaaaggtcaa gagcaccact
2341 gtgcagacca acaacgagct ggccggggcc ttgcaccatc tcaaacacgc ccggatcagg
2401 tactacgtca aatgtgtgca agaagcaatc tattccatca tacaaattgc cggcgctgcg
2461 tttgtcacca cgcgcattgc acgccgcatg aacatacagg agctctggtc gaagccacaa
2521 ttagatcaaa gtgactcaga gcttaaggaa gaggccctca agccagagga cgacgagttc
2581 gtcatatctt ctaaggacat caaggaggaa gggaagaagg gcaaaaataa aactggccgt
2641 ggcaagaaac acactgcatt ttccagtaag ggcttgagtg atgaagagta tgacgagtat
2701 aagaggataa gagaagagag aaatgggaag tactctatag aggagtatct ccaagacaga
2761 gacaggtatt atgaggagct cgccattgcc aaggccacgg aagaagactt ctgtgaagag
2821 gaagagatca aaatccgtca gagaattttc cgtcccacca ggaaacaaag aaaggaagag
2881 agggccacat tggggttagt aacgggttca gaaatcagaa agagaaaccc tgatgacttc
2941 aaacccaaag ggaagctgtg ggccgatgac aacagaagtg ttgactacaa tgaaaaactg
3001 gactttgagg cccccccaag catatggtct aggattgtga gctttggttc tggctggggc
3061 ttctgggttt caccaagcct gttcataaca tcaactcatg taatccccgc aggcataaca
3121 gaagcatttg gagtctccat caaacaaatt cagatccaca aatcaggtga attttgccga
3181 ttcagattcc caaaaccaat tagaccagat gtgacaggaa tgatcttgga agagggtgcg
3241 cctgagggca ccgtggcaac tgtgctcatc aaacgcccca ccggagagct catgcctctt
3301 gcagccagaa tgggaacgca cgcaaccatg aaaattcaag gccgcatggt tggcgggcag
3361 atgggcatgt tgctcactgg atcaaatgct aaaggaatgg atttgggaac aactcctggt
3421 gactgtggct gcccctacat ctataaaaga ggcaatgact acatagtcat tggagtgcac
3481 actgcagcag cccgtggtgg aaacaccgtc atctgtgcca cacagggaag cgaaggtgag
3541 gcaactcttg agggtggaga tgacaaagga acatactgtg gggcacccat tctgggccct
3601 gggggcgcac caaaattgag caccaaaacc aaattttgga ggtcatcgaa cacgcccctt
3661 ccaccaggga cgtatgagcc tgcctacctc ggcggccgtg atccgcgtgt caagggtggg
3721 ccctccttgc aacaggtaat gagagatcag ttgaagccat tcactgaacc caggggcaaa
3781 cctccaagac caagtgtgtt ggaagcagcc aaacaaacca tcatcaatgt cctcgaacaa
3841 accctggacc ctccacaaaa atggacatac gcgcaggcgt gtgcctcact tgacaaaacc
3901 acctccagcg ggaaccccca tcacgtccga aagaatgaat tctggaatgg tgagacattc
3961 attggaaaat tggcagacca agcatcaaaa gcaaacctaa tgtttgagga agggaaacat
4021 atgacaccag tgtacacagc agcactcaag gacgagctag ttaagactga gaaaatctat
4081 ggaaagatca agaagaggct gctctggggc tctgacttgt ccaccatgat ccggtgtgct
4141 aggtcatttg gtgggctcat ggacgagatg aaggcacact gcatatcact cccagtccga
4201 gttggcatga atatgaatga agatggtcca ataatatttg agaaacattc cagatataaa
4261 taccactatg atgcagacta ctctcgttgg gattcaacac aacagagggc agtgctggca
4321 gcagctttgg aaatcatggt cagattctct gcagaaccac aattggcaca aatagtcgct
4381 gaggatctgc tggcccctag tgtagtagat gtaggagact ttaaaatcac aataaatgaa
4441 gggctcccct ctggtgttcc atgcacttct caatggaact ccatcgcaca ctggctacta
4501 actctctgtg ccttgtctga agtcaccaaa ctgtcccctg acattataca ggcaaattcc
4561 atgttctcat tttacggtga tgacgagatt gtcagcaccg acataaaatt agaccctgaa
4621 cagttaaccg ccaagttgaa ggagtacggc ctgaagccga cccgcccaga caaaaccgag
4681 ggacccctga tcatcagtga agatttggac ggactcactt tcctccgaag gacggtgacc
4741 cgtgacccag ctggctggtt tggtaaactg gaccagagct ccattttgag gcagatgtac
4801 tggactagag ggccaaatca tgatgatccc aatgagacaa tgatacccca ctctcagaga
4861 cccatacagc tcatggcact gcttggtgaa gcctctcttc acggaccctc tttctatagt
4921 aaaatcagta aattggttat aactgaactc aaagaaggtg ggatggactt ttacgtgcca
4981 agacaggaac ccatgttcag gtggatgagg ttttctgact tgagcacgtg ggagggcgat
5041 cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg agtgacgccg ctccatctaa
5101 tgatggtgca gccggtctcg taccagaggt caacaacgag acaatggcac ttgaaccagt
5161 tgcgggagct tcaatcgctg cccccttaac tggtcaaaac aatgtaatag acccctggat
5221 cagattaaat tttgtacaag ccccaaatgg tgagtttaca gtctcccccc gaaactcacc
5281 cggtgaaatt ttgctaaatt tagaattagg acctgaattg aatccatatt tggctcattt
5341 ggcaagaatg tataatggtt atgcaggtgg ggtcgaggtg caggtactgc ttgctggaaa
5401 tgcgtttaca gcaggcaaat tagtatttgc agcagtcccc cctcatttcc cagttgacaa
5461 tttgagtccc ggccaaatta ccatgttccc ccatgtgatc attgatgtta gaacccttga
5521 acctgttttg ttaccactgc ctgatgtaag aaataatttc tttcattata atcaacagag
5581 tgaacctcgc atgaggctca ttgctatgct ttataccccc cttagatcta atggttcagg
5641 tgatgatgtt tttactgtgt cttgtagggt cttaactaga ccatcccctg attttgattt
5701 caattatttg gttcccccaa cagttgagtc taaaaccaaa cctttctcag tgccagtgct
5761 gactcttaat gaactgacca attcccgttt ccctgtccca attgatgcgt tgtataccag
5821 ccccaatgat acaattgtgg tccaacctca gaatgggaga gcaaccatcg acggtgaatt
5881 gcttggcacg actcagctcc ttcccaatgg catctgctca ttcagaggaa gaattacagc
5941 acatctgcaa gaagacaatc acttgtggca cgtccaagtc accaacttga atggcacccc
6001 ttttgaccca acagatgatg tgcccgctcc tttgggcatg ccagactttt ctgggcagat
6061 atttggggtg gttagccaaa gggatttagg cagcaacaac cccgcaaata ggtcccatga
6121 tgctgtagtt ccaacctata gtgcaaagtt cacccctaaa ctcggctcag tccaaattgg
6181 aacatgggac accagtgatc tacaactcca gcctgtcaaa ttcacgcctg ttggtctcaa
6241 tgaaattgga gatggcaaac attttgacca atgggtgttg ccaaattact ctggtgccct
6301 ggggctcaac atgcacctgg cccctgctgt gtccccactt tttcctggag agagattgct
6361 tttctttaga tcatatatac ccttaaaagg tggctttgga aacccataca ttgattgcct
6421 tgtgccacaa gaatggatac aacatttcta tcaagaatca gccccagcac aatcctcggt
6481 ggctctactg aggtatgtga acccagacac agggcgcacc ctgtttgagg ccaaattgca
6541 taaggaagga ttcattactg ttgctagtac cgaaaacaga cctgtgactg tccccccaaa
6601 tggttatttt aggtttgatt cttgggtaaa ccagttttac tcactcgccc ccatgggaac
6661 tggcaatggg cgcagaagga tgcagtaatg gctggagctt ttatagcagg acttgctggt
6721 gacattgtca ccaatagtat tggctcactt gtgaacgctg gagctaatgc tataaaccaa
6781 aaggttgatt ttgagaacaa caaacagttg caacaggctt cttttaatca tgataaagag
6841 atgctgcaag cccaaatcca agccaccaag cagctgcagg ctgacatgat agcaatcaga
6901 caaggagttt tggctgcggg cggcttctcc cctactgatg ctgcaagagg tgcggttaac
6961 gcaccaatga cccaggtgtt ggactggaat ggaactagat actgggcccc tggggcgtca
7021 aggaccacca gcttttctgg tgggttcacc aacaccaccc gtgccagaac tgttgaacca
7081 cccaaaagtt ccccccctgc tcatagtgct tcagtttctg tttctaggcc cagtaccaat
7141 tcttctgctg cctcttctac taggtctttt gtaactagaa attcatcccg caatactcct
7201 caatctgtct cctttgcttc ttcgcgtact agtgattggg tacagaatca aaatagaatg
7261 ctggagccat atctgaaggg atctctgcaa acagcttttg tgtcaccgcc ctccagtaag
7321 gcttccagta atggcactgt ctcaactgtg ccaaaagaaa ttttggactc ctggacatct
7381 gcgtttaaca cccgcagaca gccgctcttc gcacatctcc gtcggagggg ggagtcacaa
7441 gc
//