Typing tool
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Typing tool
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Complete norovirus genomes
| PV394762 | GII.16 | |
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| GII.P16 |
ORF1: 1..5089
ORF2: 5070..6692
ORF3: 6692..7485
LOCUS PV394762 7485 bp RNA linear VRL 30-APR-2025
DEFINITION Norovirus GII isolate Hu/IN/2025/GII.16[P16]/NIV-2510791
nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2)
gene, complete cds; and VP2 (ORF3) gene, partial cds.
ACCESSION PV394762
VERSION PV394762.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7485)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Characterization of Norovirus detected from GBS and Non-GBS
patients from Pune, India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7485)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2025) Bioinformatics Group, ICMR-National
Institute of Virology, Dr. Ambedkar Road, Pune, Maharashtra 411001,
India
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench software v. 20
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7485
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/IN/2025/GII.16[P16]/NIV-2510791"
/isolation_source="Human fecal"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="India"
/collection_date="27-Jan-2025"
/note="genotype: GII.16 [P16]"
gene <1..5089
/gene="ORF1"
CDS <1..5089
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="XQO23116.1"
/translation="SSDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPA
PRDKPQKPPRPPTPELVRRIPPPPPNGGEEEEPVIRYEVKSGISGLPELTTVPQPDVA
NTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMA
RVELTPLSLYWRVVYTPQYLISPDTLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIK
PLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEFQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDTEEEKARRLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAR
KVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPL
TLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLMDTMKVGNQLKGVKTMEE
LKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKSTTVQTNNELAGALHHLKHA
RIRYYVKCVQEAIYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQSDSELKEEALKP
EDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSE
IRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFI
TSTHVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVAT
VLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCP
YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGA
PKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGNPHHVRKNEFWNGET
FIGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMI
RCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGL
KPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHDD
PNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..985
/gene="ORF1"
/product="p48"
mat_peptide 986..2083
/gene="ORF1"
/product="NTPase"
mat_peptide 2084..2614
/gene="ORF1"
/product="p22"
mat_peptide 2615..3013
/gene="ORF1"
/product="VPg"
mat_peptide 3014..3556
/gene="ORF1"
/product="Pro"
mat_peptide 3557..5086
/gene="ORF1"
/product="RdRp"
gene 5070..6692
/gene="ORF2"
CDS 5070..6692
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XQO23117.1"
/translation="MKMASSDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLARMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQSEPRMRLIAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFSVPVLTLNELTNSRFPVPIDALYTSPNDTIVVQPQNGRATIDGELLGTT
QLLPNGICSFRGRITAHLQEDNHLWHVQVTNLNGTPFDPTDDVPAPLGMPDFSGQIFG
VVSQRDLGSNNPANRSHDAVVPTYSAKFTPKLGSVQIGTWDTSDLQLQPVKFTPVGLN
EIGDGKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGFGNPYID
CLVPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHKEGFITVASTENRPVT
VPPNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
gene 6692..>7485
/gene="ORF3"
CDS 6692..>7485
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XQO23118.1"
/translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIAIRQGVLAAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGASRTTSFSGGFTNTTRARTVEPPKSSPPAHSASVSVSRPSSTVSSSSTRST
VVTNSSAASSTRSFVTRNSSRNTPQSVSFASSRTSDWVQNQNRMLEPYLKGSLQTAFV
SPPSSKASSNGTVSTVPKEILDSWSSAFNTRRQPLFAHLRRRGESQA"
ORIGIN
1 gtcgtcagac gctaccgttg ccgttgcttg caacaacaac aacgacaagg aaaaatcttc
61 aggtgaaggc ttatttacaa atatgtcttc caccttaaag aaagccctcg gggctaggcc
121 caaacagcct gccccgagag acaaaccaca aaagccccca agaccaccaa ctcccgagtt
181 ggtcaggagg ataccccctc ctccacctaa tggcggagag gaagaagagc cagtcattag
241 gtatgaagtt aagagcggga tctctggcct gcccgagctc acaacagtcc cccaaccgga
301 cgtggccaac acagcattca gtgttccacc actgagcttg agagaaaata gggaggccaa
361 ggaaccgcta acaggggcaa tattagagat gtgggatgga gagatatacc actatggcct
421 atacgtggag aaaggcctag tgttgggtgt acacaaacca cctgcagcca taagcatggc
481 aagagtggaa ctgacgccgc tgtcattata ctggcgtgta gtgtacactc cccaatacct
541 catctcccct gatactctca ggaggctcaa cggagaggct ttcccttaca ccgcctttga
601 caacaactgc tatgcctttt gttgctgggt gttagacctt aatgactcat ggcttagcag
661 gagaatggtg cagagaacaa cgggcttctt cagaccttac caagagtgga acagaaaacc
721 cctgcctacc atggatgact ccaaaatcaa gaaggtggca aatatattcc tatgttcatt
781 gtctacatta tttaccaggc ccataaaaga tctcatagga aaaattaaac ctttaaacat
841 attgaacatt ctggcaacgt gtgactggac gtttgccggg atagtggagt ctctgatatt
901 acttgctgaa ctcttcggag ttttctggac acccccagat gtgtctgcta tgatcgctcc
961 cttactcggg gactacgagt tccaagggcc agaagacctc gccgttgaac tcgtgcctgt
1021 agtaatggga gggattggtt tggtgttggg attcaccaaa gagaaaattg gcaaaatgtt
1081 gtcttcagca gcatcaacac tcagggcttg caaagatctt ggtgcctatg gcttagagat
1141 actcaaattg gtcatgaagt ggttcttccc aaagaaagag gaggccaatg agttagccat
1201 ggtgagggcc atagaggatg ctgtactaga tcttgaggca atagaaaata accacatgac
1261 aaccctgttg aaagacaaag acagcctagc aacatacatg aaaacactag acacggagga
1321 ggagaaagcc agaaggttat ccacaaaatc tgcatcccct gacatagttg ggacaatcaa
1381 cgccctactg gctcgaatag cagcggccag atcattagtc cacagggcca aggaagagct
1441 atccagcagg ataagaccag tagtcgttat gatatctggt aaaccaggaa taggcaaaac
1501 tcatctggcc agggaggtgg caagaaaagt ggcttccact ctcacagggg accagagagt
1561 cgggctcata ccaagaaacg gtgtggacca ttgggatgca tacaaaggcg agagagtcgt
1621 gctgtgggac gactatggca tgagtaatcc cattcatgat gctcttcgca tacaagaatt
1681 ggctgatacg tgtcccctta ccttaaattg tgacagaatt gaaaacaaag gaaaagtttt
1741 tgacagtgaa gtcataataa tcacaacgaa ccttgccaat ccagccccac ttgactacgt
1801 taactttgaa gcctgttcca ggagaattga cttcctggtg tacgctgagg caccagaagt
1861 agagaaggca aaacgggact tccctggtca gccagatatg tggaaggacg cctttaaacc
1921 ggacttttca cacatcaagc tgcaacttgc acctcagggc ggctttgaca agaatggcaa
1981 caccccacat gggaaaggag tgatgaagac cctcactacc ggctctctga tcgctcgtgc
2041 atcaggccta ctgcatgaga ggatggatga attcgaactc caaggcccta caatcaccac
2101 cttcaatttc gaccggaaca gaatcacagc attcagacaa ctggctgcag aaaataagta
2161 tggattaatg gataccatga aagttggtaa tcaattaaaa ggagtgaaaa ccatggaaga
2221 actcaaacag gcaatcagga atgtgaccat caagaggtgc cggatcattt acggtggctc
2281 cacatatgac cttgaatctg acggcaaggg caaagttttg gtggaaaagg tcaagagcac
2341 cactgtgcag accaacaacg agctggccgg ggccttgcac catctcaaac acgcccggat
2401 caggtactac gtcaaatgtg tgcaagaagc aatctattcc atcatacaaa ttgccggcgc
2461 tgcgtttgtc accacgcgca ttgcacgccg catgaacata caggagctct ggtcgaagcc
2521 acaattagat caaagtgact cagagcttaa ggaagaggcc ctcaagccag aggacgacga
2581 gttcgtcata tcttctaagg acatcaagga ggaagggaag aagggcaaaa ataaaactgg
2641 ccgtggcaag aaacacactg cattttccag taagggcttg agtgatgaag agtatgacga
2701 gtataagagg ataagagaag agagaaatgg gaagtactct atagaggagt atctccaaga
2761 cagagacagg tattatgagg agctcgccat tgccaaggcc acggaagaag acttctgtga
2821 agaggaagag atcaaaatcc gtcagagaat tttccgtccc accaggaaac aaagaaagga
2881 agagagggcc acattggggt tagtaacggg ttcagaaatc agaaagagaa accctgatga
2941 cttcaaaccc aaagggaagc tgtgggccga tgacaacaga agtgttgact acaatgaaaa
3001 actggacttt gaggcccccc caagcatatg gtctaggatt gtgagctttg gttctggctg
3061 gggcttctgg gtttcaccaa gcctgttcat aacatcaact catgtaatcc ccgcaggcat
3121 aacagaagca tttggagtct ccatcaaaca aattcagatc cacaaatcag gtgaattttg
3181 ccgattcaga ttcccaaaac caattagacc agatgtgaca ggaatgatct tggaagaggg
3241 tgcgcctgag ggcaccgtgg caactgtgct catcaaacgc cccaccggag agctcatgcc
3301 tcttgcagcc agaatgggaa cgcacgcaac catgaaaatt caaggccgca tggttggcgg
3361 gcagatgggc atgttgctca ctggatcaaa tgctaaagga atggatttgg gaacaactcc
3421 tggtgactgt ggctgcccct acatctataa aagaggcaat gactacatag tcattggagt
3481 gcacactgca gcagcccgtg gtggaaacac cgtcatctgt gccacacagg gaagcgaagg
3541 tgaggcaact cttgagggtg gagatgacaa aggaacatac tgtggggcac ccattctggg
3601 ccctgggggc gcaccaaaat tgagcaccaa aaccaaattt tggaggtcat cgaacacgcc
3661 ccttccacca gggacgtatg agcctgccta cctcggcggc cgtgatccgc gtgtcaaggg
3721 tgggccctcc ttgcaacagg taatgagaga tcagttgaag ccattcactg aacccagggg
3781 caaacctcca agaccaagtg tgttggaagc agccaaacaa accatcatca atgtcctcga
3841 acaaaccctg gaccctccac aaaaatggac atacgcgcag gcgtgtgcct cacttgacaa
3901 aaccacctcc agcgggaacc cccatcacgt ccgaaagaat gaattctgga atggtgagac
3961 attcattgga aaattggcag accaagcatc aaaagcaaac ctaatgtttg aggaagggaa
4021 acatatgaca ccagtgtaca cagcagcact caaggacgag ctagttaaga ctgagaaaat
4081 ctatggaaag atcaagaaga ggctgctctg gggctctgac ttgtccacca tgatccggtg
4141 tgctaggtca tttggtgggc tcatggacga gatgaaggca cactgcatat cactcccagt
4201 ccgagttggc atgaatatga atgaagatgg tccaataata tttgagaaac attccagata
4261 taaataccac tatgatgcag actactctcg ttgggattca acacaacaga gggcagtgct
4321 ggcagcagct ttggaaatca tggtcagatt ctctgcagaa ccacaattgg cacaaatagt
4381 cgctgaggat ctgctggccc ctagtgtagt agatgtagga gactttaaaa tcacaataaa
4441 tgaagggctc ccctctggtg ttccatgcac ttctcaatgg aactccatcg cacactggct
4501 actaactctc tgtgccttgt ctgaagtcac caaactgtcc cctgacatta tacaggcaaa
4561 ttccatgttc tcattttacg gtgatgacga gattgtcagc accgacataa aattagaccc
4621 tgaacagtta accgccaagt tgaaggagta cggcctgaag ccgacccgcc cagacaaaac
4681 cgagggaccc ctgatcatca gtgaagattt ggacggactc actttcctcc gaaggacggt
4741 gacccgtgac ccagctggct ggtttggtaa actggaccag agctccattt tgaggcagat
4801 gtactggact agagggccaa atcatgatga tcccaatgag acaatgatac cccactctca
4861 gagacccata cagctcatgg cactgcttgg tgaagcctct cttcacggac cctctttcta
4921 tagtaaaatc agtaaattgg ttataactga actcaaagaa ggtgggatgg acttttacgt
4981 gccaagacag gaacccatgt tcaggtggat gaggttttct gacttgagca cgtgggaggg
5041 cgatcgcaat ctggctccca attttgtgaa tgaagatggc gtcgagtgac gccgctccat
5101 ctaatgatgg tgcagccggt ctcgtaccag aggtcaacaa cgagacaatg gcacttgaac
5161 cagttgcggg agcttcaatc gctgccccct taactggtca aaacaatgta atagacccct
5221 ggatcagatt aaattttgta caagccccaa atggtgagtt tacagtctcc ccccgaaact
5281 cacccggtga aattttgcta aatttagaat taggacctga attgaatcca tatttggctc
5341 atttggcaag aatgtataat ggttatgcag gtggggtcga ggtgcaggta ctgcttgctg
5401 gaaatgcgtt tacagcaggc aaattagtat ttgcagcagt cccccctcat ttcccagttg
5461 acaatttgag tcccggccaa attaccatgt tcccccatgt gatcattgat gttagaaccc
5521 ttgaacctgt tttgttacca ctgcctgatg taagaaataa tttctttcat tataatcaac
5581 agagtgaacc tcgcatgagg ctcattgcta tgctttatac cccccttaga tctaatggtt
5641 caggtgatga tgtttttact gtgtcttgta gggtcttaac tagaccatcc cctgattttg
5701 atttcaatta tttggttccc ccaacagttg agtctaaaac caaacctttc tcagtgccag
5761 tgctgactct taatgaactg accaattccc gtttccctgt cccaattgat gcgttgtata
5821 ccagccccaa tgatacaatt gtggtccaac ctcagaatgg gagagcaacc atcgacggtg
5881 aattgcttgg cacgactcag ctccttccca atggcatctg ctcattcaga ggaagaatta
5941 cagcacatct gcaagaagac aatcacttgt ggcacgtcca agtcaccaac ttgaatggca
6001 ccccttttga cccaacagat gatgtgcccg ctcctttggg catgccagac ttttctgggc
6061 agatatttgg ggtggttagc caaagggatt taggcagcaa caaccccgca aataggtccc
6121 atgatgctgt agttccaacc tatagtgcaa agttcacccc taaactcggc tcagtccaaa
6181 ttggaacatg ggacaccagt gatctacaac tccagcctgt caaattcacg cctgttggtc
6241 tcaatgaaat tggagatggc aaacattttg accaatgggt gttgccaaat tactctggtg
6301 ccctggggct caacatgcac ctggcccctg ctgtgtcccc actttttcct ggagagagat
6361 tgcttttctt tagatcatat atacccttaa aaggtggctt tggaaaccca tacattgatt
6421 gccttgtgcc acaagaatgg atacaacatt tctatcaaga atcagcccca gcacaatcct
6481 cggtggctct actgaggtat gtgaacccag acacagggcg caccctgttt gaggccaaat
6541 tgcataagga aggattcatt actgttgcta gtaccgaaaa cagacctgtg actgtccccc
6601 caaatggtta ttttaggttt gattcttggg taaaccagtt ttactcactc gcccccatgg
6661 gaactggcaa tgggcgcaga aggatgcagt aatggctgga gcttttatag caggacttgc
6721 tggtgacatt gtcaccaata gtattggctc acttgtgaac gctggagcta atgctataaa
6781 ccaaaaggtt gattttgaga acaacaaaca gttgcaacag gcttctttta atcatgataa
6841 agagatgctg caagcccaaa tccaagccac caagcagctg caggctgaca tgatagcaat
6901 cagacaagga gttttggctg cgggcggctt ctcccctact gatgctgcaa gaggtgcggt
6961 taacgcacca atgacccagg tgttggactg gaatggaact agatactggg cccctggggc
7021 gtcaaggacc accagctttt ctggtgggtt caccaacacc acccgtgcca gaactgttga
7081 accacccaaa agttcccccc ctgctcatag tgcttcagtt tctgtttcta ggcccagttc
7141 tactgtctca tcttcttcta ctcggtcgac agtagttacc aattcttctg ctgcctcttc
7201 tactaggtct tttgtaacta gaaattcatc ccgcaatact cctcaatctg tctcctttgc
7261 ttcttcgcgt actagtgatt gggtacagaa tcaaaataga atgctggagc catatctgaa
7321 gggatctctg caaacagctt ttgtgtcacc gccctccagt aaggcttcca gtaatggcac
7381 tgtctcaact gtgccaaaag aaattttgga ctcctggtca tctgcgttta acacccgcag
7441 acagccgctc ttcgcacatc tccgtcggag gggggagtca caagc
//