Typing tool
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Typing tool
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Complete norovirus genomes
| PV394760 | GII.16 | |
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| GII.P16 |
ORF1: 1..5072
ORF2: 5053..6675
ORF3: 6675..7144
LOCUS PV394760 7144 bp RNA linear VRL 30-APR-2025
DEFINITION Norovirus GII isolate Hu/IN/2025/GII.16[P16]/NIV-2510696
nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2)
gene, complete cds; and VP2 (ORF3) gene, partial cds.
ACCESSION PV394760
VERSION PV394760.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7144)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Characterization of Norovirus detected from GBS and Non-GBS
patients from Pune, India
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7144)
AUTHORS Sharma,V., Lavania,M. and Kumar,N.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2025) Bioinformatics Group, ICMR-National
Institute of Virology, Dr. Ambedkar Road, Pune, Maharashtra 411001,
India
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench software v. 20
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7144
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/IN/2025/GII.16[P16]/NIV-2510696"
/isolation_source="Human fecal"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="India"
/collection_date="24-Jan-2025"
/note="genotype: GII.16 [P16]"
gene <1..5072
/gene="ORF1"
CDS <1..5072
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XQO23110.1"
/translation="AVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAPRDKPQ
KPPRPPTPELVRRIPPPPPNGGEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSV
PPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVELTP
LSLYWRVVYTPQYLISPDTLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQ
RTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNILN
ILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEFQGPEDLAVELVPV
VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANEL
AMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDTEEEKARRLSTKSASPDIV
GTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKVASTL
TGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDR
IENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQ
PDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERM
DEFELQGPTITTFNFDRNRITAFRQLAAENKYGLMDTMKVGNQLKGVKTMEELKQAIR
NVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKSTTVQTNNELAGALHHLKHARIRYYV
KCVQEAIYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQSDSELKEEALKPEDDEFV
ISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQD
RDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNP
DDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVI
PAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKRP
TGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRG
NDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLSTK
TKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSVL
EAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGNPHHVRKNEFWNGETFIGKLA
DQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARSF
GGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAA
ALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWL
LTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPD
KTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHDDPNETMI
PHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSD
LSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..968
/gene="ORF1"
/product="p48"
mat_peptide 969..2066
/gene="ORF1"
/product="NTPase"
mat_peptide 2067..2597
/gene="ORF1"
/product="p22"
mat_peptide 2598..2996
/gene="ORF1"
/product="VPg"
mat_peptide 2997..3539
/gene="ORF1"
/product="Pro"
mat_peptide 3540..5069
/gene="ORF1"
/product="RdRp"
gene 5053..6675
/gene="ORF2"
CDS 5053..6675
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XQO23111.1"
/translation="MKMASSDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLARMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQSEPRMRLIAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFSVPVLTLNELTNSRFPVPIDALYTSPNDTIVVQPQNGRATIDGELLGTT
QLLPNGICSFRGRITAHLQEDNHLWHVQVTNLNGTPFDPTDDVPAPLGMPDFSGQIFG
VVSQRDLGSNNPANRSHDAVVPTYSAKFTPKLGSVQIGTWDTSDLQLQPVKFTPVGLN
EIGDGKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGLGNPYID
CLVPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHKEGFITVASTENRPVT
VPPNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
gene 6675..>7144
/gene="ORF3"
CDS 6675..>7144
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XQO23112.1"
/translation="MAGAFIAGLAGDIVTNSIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIAIRQGVLAAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGASRTTSFSGGFTNTTRARTVEPPKSSPPAHSASVSVSRPSSTVSSSST"
ORIGIN
1 ttgccgttgc ttgcaacaac aacaacgaca aggaaaaatc ttcaggtgaa ggcttattta
61 caaatatgtc ttccacctta aagaaagccc tcggggctag gcccaaacag cctgccccga
121 gagacaaacc acaaaagccc ccaagaccac caactcccga gttggtcagg aggatacccc
181 ctcctccacc taatggcgga gaggaagaag agccagtcat taggtatgaa gttaagagcg
241 ggatctctgg cctgcccgag ctcacaacag tcccccaacc ggacgtggcc aacacagcat
301 tcagtgttcc accactgagc ttgagagaaa atagggaggc caaggaaccg ctaacagggg
361 caatattaga gatgtgggat ggagagatat accactatgg cctatacgtg gagaaaggcc
421 tagtgttggg tgtacacaaa ccacctgcag ccataagcat ggcaagagtg gaactgacgc
481 cgctgtcatt atactggcgt gtagtgtaca ctccccaata cctcatctcc cctgatactc
541 tcaggaggct caacggagag gctttccctt acaccgcctt tgacaacaac tgctatgcct
601 tttgttgctg ggtgttagac cttaatgact catggcttag caggagaatg gtgcagagaa
661 caacgggctt cttcagacct taccaagagt ggaacagaaa acccctgcct accatggatg
721 actccaaaat caagaaggtg gcaaatatat tcctatgttc attgtctaca ttatttacca
781 ggcccataaa agatctcata ggaaaaatta aacctttaaa catattgaac attctggcaa
841 cgtgtgactg gacgtttgcc gggatagtgg agtctctgat attacttgct gaactcttcg
901 gagttttctg gacaccccca gatgtgtctg ctatgatcgc tcccttactc ggggactacg
961 agttccaagg gccagaagac ctcgccgttg aactcgtgcc tgtagtaatg ggagggattg
1021 gtttggtgtt gggattcacc aaagagaaaa ttggcaaaat gttgtcttca gcagcatcaa
1081 cactcagggc ttgcaaagat cttggtgcct atggcttaga gatactcaaa ttggtcatga
1141 agtggttctt cccaaagaaa gaggaggcca atgagttagc catggtgagg gccatagagg
1201 atgctgtact agatcttgag gcaatagaaa ataaccacat gacaaccctg ttgaaagaca
1261 aagacagcct agcaacatac atgaaaacac tagacacgga ggaggagaaa gccagaaggt
1321 tatccacaaa atctgcatcc cctgacatag ttgggacaat caacgcccta ctggctcgaa
1381 tagcagcggc cagatcatta gtccacaggg ccaaggaaga gctatccagc aggataagac
1441 cagtagtcgt tatgatatct ggtaaaccag gaataggcaa aactcatctg gccagggagg
1501 tggcaagaaa agtggcttcc actctcacag gggaccagag agtcgggctc ataccaagaa
1561 acggtgtgga ccattgggat gcatacaaag gcgagagagt cgtgctgtgg gacgactatg
1621 gcatgagtaa tcccattcat gatgctcttc gcatacaaga attggctgat acgtgtcccc
1681 ttaccttaaa ttgtgacaga attgaaaaca aaggaaaagt ttttgacagt gaagtcataa
1741 taatcacaac gaaccttgcc aatccagccc cacttgacta cgttaacttt gaagcctgtt
1801 ccaggagaat tgacttcctg gtgtacgctg aggcaccaga agtagagaag gcaaaacggg
1861 acttccctgg tcagccagat atgtggaagg acgcctttaa accggacttt tcacacatca
1921 agctgcaact tgcacctcag ggcggctttg acaagaatgg caacacccca catgggaaag
1981 gagtgatgaa gaccctcact accggctctc tgatcgctcg tgcatcaggc ctactgcatg
2041 agaggatgga tgaattcgaa ctccaaggcc ctacaatcac caccttcaat ttcgaccgga
2101 acagaatcac agcattcaga caactggctg cagaaaataa gtatggatta atggatacca
2161 tgaaagttgg taatcaatta aaaggagtga aaaccatgga agaactcaaa caggcaatca
2221 ggaatgtgac catcaagagg tgccggatca tttacggtgg ctccacatat gaccttgaat
2281 ctgacggcaa gggcaaagtt ttggtggaaa aggtcaagag caccactgtg cagaccaaca
2341 acgagctggc cggggccttg caccatctca aacacgcccg gatcaggtac tacgtcaaat
2401 gtgtgcaaga agcaatctat tccatcatac aaattgccgg cgctgcgttt gtcaccacgc
2461 gcattgcacg ccgcatgaac atacaggagc tctggtcgaa gccacaatta gatcaaagtg
2521 actcagagct taaggaagag gccctcaagc cagaggacga cgagttcgtc atatcttcta
2581 aggacatcaa ggaggaaggg aagaagggca aaaataaaac tggccgtggc aagaaacaca
2641 ctgcattttc cagtaagggc ttgagtgatg aagagtatga cgagtataag aggataagag
2701 aagagagaaa tgggaagtac tctatagagg agtatctcca agacagagac aggtattatg
2761 aggagctcgc cattgccaag gccacggaag aagacttctg tgaagaggaa gagatcaaaa
2821 tccgtcagag aattttccgt cccaccagga aacaaagaaa ggaagagagg gccacattgg
2881 ggttagtaac gggttcagaa atcagaaaga gaaaccctga tgacttcaaa cccaaaggga
2941 agctgtgggc cgatgacaac agaagtgttg actacaatga aaaactggac tttgaggccc
3001 ccccaagcat atggtctagg attgtgagct ttggttctgg ctggggcttc tgggtttcac
3061 caagcctgtt cataacatca actcatgtaa tccccgcagg cataacagaa gcatttggag
3121 tctccatcaa acaaattcag atccacaaat caggtgaatt ttgccgattc agattcccaa
3181 aaccaattag accagatgtg acaggaatga tcttggaaga gggtgcgcct gagggcaccg
3241 tggcaactgt gctcatcaaa cgccccaccg gagagctcat gcctcttgca gccagaatgg
3301 gaacgcacgc aaccatgaaa attcaaggcc gcatggttgg cgggcagatg ggcatgttgc
3361 tcactggatc aaatgctaaa ggaatggatt tgggaacaac tcctggtgac tgtggctgcc
3421 cctacatcta taaaagaggc aatgactaca tagtcattgg agtgcacact gcagcagccc
3481 gtggtggaaa caccgtcatc tgtgccacac agggaagcga aggtgaggca actcttgagg
3541 gtggagatga caaaggaaca tactgtgggg cacccattct gggccctggg ggcgcaccaa
3601 aattgagcac caaaaccaaa ttttggaggt catcgaacac gccccttcca ccagggacgt
3661 atgagcctgc ctacctcggc ggccgtgatc cgcgtgtcaa gggtgggccc tccttgcaac
3721 aggtaatgag agatcagctg aagccattca ctgaacccag gggcaaacct ccaagaccaa
3781 gtgtgttgga agcagccaaa caaaccatca tcaatgtcct cgaacaaacc ctggaccctc
3841 cacaaaaatg gacatacgcg caggcgtgtg cctcacttga caaaaccacc tccagcggga
3901 acccccatca cgtccgaaag aatgaattct ggaatggtga gacattcatt ggaaaattgg
3961 cagaccaagc atcaaaagca aacctaatgt ttgaggaagg gaaacatatg acaccagtgt
4021 acacagcagc actcaaggac gagctagtta agactgagaa aatctatgga aagatcaaga
4081 agaggctgct ctggggctct gacttgtcca ccatgatccg gtgtgctagg tcatttggtg
4141 ggctcatgga cgagatgaag gcacactgca tatcactccc agtccgagtt ggcatgaata
4201 tgaatgaaga tggtccaata atatttgaga aacattccag atataaatac cactatgatg
4261 cagactactc tcgttgggat tcaacacaac agagggcagt gctggcagca gctttggaaa
4321 tcatggtcag attctctgca gaaccacaat tggcacaaat agtcgctgag gatctgctgg
4381 cccctagtgt agtagatgta ggagacttta aaatcacaat aaatgaaggg ctcccctctg
4441 gtgttccatg cacttctcaa tggaactcca tcgcacactg gctactaact ctctgtgcct
4501 tgtctgaagt caccaaactg tcccctgaca ttatacaggc aaattccatg ttctcatttt
4561 acggtgatga cgagattgtc agcaccgaca taaaattaga ccctgaacag ttaaccgcca
4621 agttgaagga gtacggcctg aagccgaccc gcccagacaa aaccgaggga cccctgatca
4681 tcagtgaaga tttggacgga ctcactttcc tccgaaggac ggtgacccgt gacccagctg
4741 gctggtttgg taaactggac cagagctcca ttttgaggca gatgtactgg actagagggc
4801 caaatcatga tgatcccaat gagacaatga taccccactc tcagagaccc atacagctca
4861 tggcactgct tggtgaagcc tctcttcacg gaccctcttt ctatagtaaa atcagtaaat
4921 tggttataac tgaactcaaa gaaggtggga tggactttta cgtgccaaga caggaaccca
4981 tgttcaggtg gatgaggttt tctgacttga gcacgtggga gggcgatcgc aatctggctc
5041 ccaattttgt gaatgaagat ggcgtcgagt gacgccgctc catctaatga tggtgcagcc
5101 ggtctcgtac cagaggtcaa caacgagaca atggcacttg aaccagttgc gggagcttca
5161 atcgctgccc ccttaactgg tcaaaacaat gtaatagacc cctggatcag attaaatttt
5221 gtacaagccc caaatggtga gtttacagtc tccccccgaa actcacccgg tgaaattttg
5281 ctaaatttag aattaggacc tgaattgaat ccatatttgg ctcatttggc aagaatgtat
5341 aatggttatg caggtggggt cgaggtgcag gtactgcttg ctggaaatgc gtttacagca
5401 ggcaaattag tatttgcagc agtcccccct catttcccag ttgacaattt gagtcccggc
5461 caaattacca tgttccccca tgtgatcatt gatgttagaa cccttgaacc tgttttgtta
5521 ccactgcctg atgtaagaaa taatttcttt cattataatc aacagagtga acctcgcatg
5581 aggctcattg ctatgcttta tacccccctt agatctaatg gttcaggtga tgatgttttt
5641 actgtgtctt gtagggtctt aactagacca tcccctgatt ttgatttcaa ttatttggtt
5701 cccccaacag ttgagtctaa aaccaaacct ttctcagtgc cagtgctgac tcttaatgaa
5761 ctgaccaatt cccgtttccc tgtcccaatt gatgcgttgt ataccagccc caatgataca
5821 attgtggtcc aacctcagaa tgggagagca accatcgacg gtgaattgct tggcacgact
5881 cagctccttc ccaatggcat ctgctcattc agaggaagaa ttacagcaca tctgcaagaa
5941 gacaatcact tgtggcacgt ccaagtcacc aacttgaatg gcaccccttt tgacccaaca
6001 gatgatgtgc ccgctccttt gggcatgcca gacttttctg ggcagatatt tggggtggtg
6061 agccaaaggg atttaggcag caacaacccc gcaaataggt cccatgatgc tgtagttcca
6121 acctatagtg caaagttcac ccctaaactc ggctcagtcc aaattggaac atgggacacc
6181 agtgatctac aactccagcc tgtcaaattc acgcctgttg gtctcaatga aattggagat
6241 ggcaaacatt ttgaccaatg ggtgttgcca aattactctg gtgccctggg gctcaacatg
6301 cacctggccc ctgctgtgtc cccacttttt cctggagaga gattgctttt ctttagatca
6361 tatataccct taaaaggtgg ccttggaaac ccatacattg attgccttgt gccacaagaa
6421 tggatacaac atttctatca agaatcagcc ccagcacaat cctcggtggc tctactgagg
6481 tatgtgaacc cagacacagg gcgcaccctg tttgaggcca aattgcataa ggaaggattc
6541 attactgttg ctagtaccga aaacagacct gtgactgtcc ccccaaatgg ttattttagg
6601 tttgattctt gggtaaacca gttttactca ctcgccccca tgggaactgg caatgggcgc
6661 agaaggatgc agtaatggct ggagctttta tagcaggact tgctggtgac attgtcacca
6721 atagtattgg ctcacttgtg aacgctggag ctaatgctat aaaccaaaag gttgattttg
6781 agaacaacaa acagttgcaa caggcttctt ttaatcatga taaagagatg ctgcaagccc
6841 aaatccaagc caccaagcag ctgcaggctg acatgatagc aatcagacaa ggagttttgg
6901 ctgcgggcgg cttctcccct actgatgctg caagaggtgc ggttaacgca ccaatgaccc
6961 aggtgttgga ctggaatgga actagatact gggcccctgg ggcgtcaagg accaccagct
7021 tttctggtgg gttcaccaac accacccgtg ccagaactgt tgaaccaccc aaaagttccc
7081 cccctgctca tagtgcttca gtttctgttt ctaggcccag ttctactgtc tcatcttctt
7141 ctac
//