Typing tool
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Typing tool
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Complete norovirus genomes
| PV282526 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5093
ORF2: 5074..6696
ORF3: 6696..7502
LOCUS PV282526 7548 bp RNA linear VRL 28-JUL-2025
DEFINITION Norovirus GII isolate p1630-BCM16-1 nonstructural polyprotein
(ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes,
complete cds.
ACCESSION PV282526
VERSION PV282526.1
DBLINK BioProject: PRJNA1195114
BioSample: SAMN45209640
Sequence Read Archive: SRR31712880
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7548)
AUTHORS Bhamidipati,S.V., Surathu,A., Ramani,S., Atmar,R.L., Estes,M.K.,
Muzny,D.M., Cregeen,S.J. and Doddapaneni,H.
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2025) Molecular Virology and Microbiology, Baylor
College of Medicine, Alkek Center for Metagenomics and Microbiome
Research, 1 Baylor Plaza, Houston, TX 77030, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: VirMap v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7548
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="p1630-BCM16-1"
/isolation_source="Enteroids"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: Houston"
/collection_date="01-Dec-2022"
/note="genotype: GII.4"
gene <1..5093
/gene="ORF1"
CDS <1..5093
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XPY62845.1"
/translation="ASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQP
PPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETN
TAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAK
VELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAV
ELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE
EANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTVNSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKK
IAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDL
KQALKNIAIKKCQIVYNGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCAR
IRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMTNKDGCLKP
KDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGS
EIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLF
ITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVA
TLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGS
APKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGE
SFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKIKKRLLWGSDLATM
IRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRDVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYG
LKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHE
DPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..983
/gene="ORF1"
/product="p48"
mat_peptide 984..2081
/gene="ORF1"
/product="NTPase"
mat_peptide 2082..2618
/gene="ORF1"
/product="p22"
mat_peptide 2619..3017
/gene="ORF1"
/product="VPg"
mat_peptide 3018..3560
/gene="ORF1"
/product="Pro"
mat_peptide 3561..5090
/gene="ORF1"
/product="RdRp"
gene 5074..6696
/gene="ORF2"
CDS 5074..6696
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XPY62846.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHTTGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6696..7502
/gene="ORF3"
CDS 6696..7502
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XPY62847.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRDLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 tggcgtctaa cgacgcttcc gctgccgctg ttgccaacag caacaacgac atcgcaaaat
61 cttcaagtga cggtgtgttt tctaacatgg ctgtcacttt taagcgggcc ctcggggcgc
121 ggcctaaaca gccgcccccg aaggagatac cacccagacc cccgcgacca cccacaccgg
181 aattggtcaa aaagatccct cctcccccac ccaacgggga ggatgaacta gtggtctctt
241 acagcgccaa agatggcgtt tccggattgc ctgagctcac cactgtcaga caaccggaag
301 aaaccaacac ggcgttcagt gtccccccac tcaaccaaag ggagagcagg gacgccaagg
361 agccactaac tggaacaatt attgaaatgt gggatggaga aatctaccat tacggcctgt
421 acgtggaacg aggtcttata ctcggtgtgc acaagccacc ggcagccatc agccttgcca
481 aggtcgagct aacaccgctc tctttgttct ggagacctgt atacaccccc cagtatctca
541 tctctccaga cactcttagg agattacatg gagagtcatt cccctacact gcatttgaca
601 acaattgcta cgccttttgt tgttgggtat tagacctaaa cgactcatgg ctaagcagga
661 gaatgattca gagaacaaca ggtttcttca ggccgtacca ggattggaac aggaaacccc
721 tccccactat ggatgattcc aaattaaaga aggtagccaa catattcttg tgcactttgt
781 cttcactatt caccagaccc attaaggaca taatagggaa gttgaaaccc ctcaacatcc
841 ttaacattct ggctacatgt gattggacct tcgcaggcat agtggaatct ttaatactct
901 tagcagaact ctttggagtt ttctggacac ccccagatgt gtctgcgatg atcgccccct
961 tgctaggtga ttatgaactg caaggacctg aggaccttgc agtggagcta gtcccaatag
1021 tgatgggggg gataggtttg gtgctaggat ttaccaaaga gaaaattgga aagatgctat
1081 catccgctgc atccacttta agagcttgta aagaccttgg tgcatacgga ctggaaatct
1141 taaaattggt catgaagtgg ttcttcccaa agaaagagga agcaaatgaa ctggctatgg
1201 tgagatccat cgaggatgca gtgctagacc tcgaggcaat tgaaaacaac cacatgacca
1261 ccctactcaa agacaaagac agcttggcaa cctacatgag aacccttgac cttgaggagg
1321 agaaagccag aaaactctca accaaatctg cttcacccga tattgtgggc acagtcaact
1381 ctcttctggc aagaatcgct gctgcacgct ccctagtgca tcgggcgaaa gaagagctct
1441 ccagcaggcc gagacctgtc gttgtgatga tatcgggaag accagggata gggaaaactc
1501 accttgccag ggagctagcc aagaagatcg cggcctccct cacaggggac cagcgtgtgg
1561 gtcttatccc acgcaatggt gtcgatcact gggacgcata caagggcgaa agagttgtcc
1621 tatgggacga ctatggaatg agcaacccca tccatgatgc cctcaggttg caggagcttg
1681 ctgacacttg ccccctcacg ctaaattgtg acagaattga gaacaaaggg aaagtctttg
1741 acagtgatgc tataattatc accaccaatc tggccaaccc agcaccactg gattatgtca
1801 actttgaagc gtgctcgaga cgtattgact tcctcgtgta cgcagaagcc cctgaggtgg
1861 agaaggcaaa gcgcgacttc ccaggtcaac ctgacatgtg gaagaacgct ttcagtcctg
1921 acttctcaca cataaaactg tcattggctc cacagggtgg ttttgacaag aacggcaaca
1981 ccccgcatgg aaaaggggtc atgaagaccc tcaccactgg ctccctcatc gcccgagcat
2041 cagggttact ccatgagagg ctagatgaat atgaactgca aggcccagcc ctcaccactt
2101 tcaactttga ccgaaacaag atacttgctt ttagacagct tgctgctgaa aacaagtatg
2161 ggctgatgga cacaatgaga gttggaaaac agctcaagga tgtcaagacc atgtcagacc
2221 tcaaacaagc actcaagaac atcgcgatca agaaatgcca gatagtgtac aatggtagca
2281 cctacacact tgaggccgat ggcaagggta gtgtgaaagt tgacaaagtg caaagtgcca
2341 ctgtgcagac caacaatgaa ctagccggtg ccctacacca cctaaggtgc gctagaatca
2401 gatactatgt taagtgcgtc caggaggcac tgtattccat catccaaatc gctggggctg
2461 cattcgtcac cacgcgcatc gctaagcgca tgaatataca gaatctctgg tccaagccac
2521 aggtggaaga cacagaagag atgaccaaca aagatggttg cctaaaaccc aaagatgatg
2581 aagagtttgt cgtctcatcc gacgacatca aaactgaggg caagaaaggg aagaacaagt
2641 ccggccgtgg caagaaacac acagcctttt caagcaaagg gctcagtgat gaggagtacg
2701 atgagtacaa gagaatcaga gaagaaagga atggtaagta ctccatagaa gagtaccttc
2761 aggacagaga caggtactac gaggaggtgg ccattgccag ggcaaccgaa gaggacttct
2821 gtgaagaaga agaggccaaa atccggcaga gaatttttag accaacaagg aaacaacgca
2881 aagaagagag ggcctctctc ggcttggtca caggctctga aatcaggaag agaaacccag
2941 aagacttcaa acccaaggga aagctgtggg ctgatgatga cagaagtgtt gactacaatg
3001 agaaactcaa ctttgaggcc ccaccaagca tctggtcgcg gatagtcaac tttggttcag
3061 gctggggctt ctgggtctcc cccagtctgt ttataacatc aacccatgtc ataccccaag
3121 gtgcaaaaga gttcttcgga gtccctatca agcaaatcca gatacacaaa tcaggtgaat
3181 tctgccggtt gagattccca aagccaatca gaactgatgt gacgggcatg attctagaag
3241 aaggtgcgcc cgaggggacc gtggccacac tgctcatcaa gagaccaact ggagagctca
3301 tgcctctggc agccagaatg gggacccatg caaccatgaa aattcagggg cgcacagttg
3361 gagggcaaat gggtatgctc ctgacaggat ccaacgccaa gagtatggac ctaggcacaa
3421 caccaggcga ctgcggctgc ccctacatct acaagagggg gaatgactac gtggtcatag
3481 gagtccatac ggccgctgcc cgtggaggaa acaccgtcat atgtgccacc caggggagtg
3541 agggagaagc cacacttgaa ggaggtgaca gtaaagggac atactgtggc gcaccaatct
3601 tgggcccagg gagcgctccg aaactcagca ccaagactaa gttttggaga tcatccacaa
3661 caccactccc acctggcacc tacgaaccag cctacctcgg tggcaaagac cccagagtca
3721 aaggtggccc ttcattgcaa caagttatga gggaccagct aaagccattc acagaaccca
3781 gaggcaaacc accaagacca aacgtgttgg aagctgccaa gaaaaccatc atcaatgtcc
3841 ttgagcaaac aattgatcca ccccaaaaat ggtcatttgc gcaagcttgc gcatcccttg
3901 acaaaaccac ctccagcggc cacccgcacc acatgcggaa aaacgattgt tggaatgggg
3961 agtccttcac aggaaaattg gctgatcaag cctccaaggc caacctaatg tttgaagagg
4021 gaaagaacat gaccccagtc tacacaggtg cacttaaaga tgagttggta aagaccgata
4081 aagtttatgg taagatcaag aagaggcttc tgtggggttc agatctggcg accatgatac
4141 ggtgcgctcg agcttttgga ggccttatgg atgaactcaa ggcgcactgt gtcacacttc
4201 ctgtcagagt tggtatgaac atgaatgagg atggccccat catctttgag aagcactcca
4261 gatatagata tcactatgat gctgattatt cccggtggga ctcaacacaa caaagggatg
4321 tgctagcagc agcactagaa atcatggtta agttctcttc agaaccacac ctggcccagg
4381 tagttgcaga agacctcctt tcccctagcg taatggatgt aggtgacttt caaatatcaa
4441 taagtgaggg tcttccctct ggggtacctt gtacctccca gtggaattcc atcgcccact
4501 ggctcctcac tctttgtgca ctctctgaag tcacggacct gtcccctgac atcattcagg
4561 ccaactccct tttctccttc tacggtgatg atgagattgt aagcacagac ataaagttgg
4621 acccagagaa gctgacagca aaactcaagg agtacgggct gaaaccaacc cgccccgaca
4681 aaactgaagg accccttgtt atctctgaag acctggatgg cctgacattc ctccggagaa
4741 ctgtgacccg tgatccagct ggctggtttg gaaaattgga acaaagttca attctcagac
4801 aaatgtactg gaccaggggt cccaaccatg aagatccatt tgaaacaatg ataccacact
4861 cccaaagacc catacaattg atgtccttgc tgggcgaggc tgcactccat ggcccggcat
4921 tttatagcaa aattagcaag ttagtcattg cagagttgaa ggaaggtggc atggattttt
4981 acgtgcccag acaagagcca atgttcagat ggatgagatt ctcagatctg agcacgtggg
5041 agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag tgacgccaac
5101 ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt tatggctctg
5161 gagcccgttg ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa tgtaattgac
5221 ccctggatta gaaacaattt tgtacaagcc cctggtggag agtttacagt gtcccctaga
5281 aacgctccag gtgaaatact atggagcgcg cccttgggcc ctgatctaaa tccctaccta
5341 tcccatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca ggtaattctc
5401 gcggggaacg cgttcaccgc cgggaaggtc atatttgcag cagtcccacc aaattttcca
5461 actgaaggct tgagccccag ccaggtcact atgttccccc atatagtagt agatgttagg
5521 caactagaac ctgtgttgat tcccttaccc gatgttagga ataatttcta tcattataat
5581 cagtcaaatg accccaccat taagttgata gcaatgttgt acacaccact tagggctaat
5641 aatgctgggg atgatgtctt cacagtttct tgccgagttc tcacgagacc atcccccgat
5701 tttgatttca tatttctagt gccacccaca gttgagtcaa gaactaaacc attctctgtc
5761 ccagttttaa ctgttgagga gatgaccaat tcaagattcc ccattccttt ggaaaagttg
5821 ttcacgggtc ccagcagtgc ctttgttgtc caaccacaaa acggcaggtg cacgactgat
5881 ggcgtgctcc taggcaccac ccaactgtct cctgtcaaca tctgcacctt cagaggagat
5941 gtcacccata ccacaggtag tcgtaactac acaatgaatt tggcttctca aaattggaac
6001 aattatgacc caacagaaga aatcccagcc cctctaggaa ctccagactt tgtggggaag
6061 attcaaggcg tgctcaccca aaccacaagg acagatggct caacacgcgg ccacaaagcc
6121 acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtagagttca atttgaaact
6181 gacacagacc atgattttga agctaaccaa aacacaaagt tcaccccagt cggtgtcatc
6241 caagatggta gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc aagttactca
6301 ggcagaaata ctcctaatgt gcatctggcc cccgctgtag cccccacttt tccgggtgag
6361 caacttctct tcttcagatc caccatgccc ggatgcagcg gttaccccaa catggatttg
6421 gactgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc cccagcacaa
6481 tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagggtttt gtttgagtgt
6541 aagcttcata aatcaggcta tgttacagtg gctcacactg gccaacatga tttggttatt
6601 ccccccaatg gttattttag atttgattcc tgggtcaacc agttctacac gcttgccccc
6661 atgggaaatg gaacggggcg tagacgtgca gtataatggc tggagctttc tttgctggat
6721 tggcatctga tgtccttggc tctggacttg gttcccttat caatgctggg gctggggcca
6781 tcaaccaaaa agttgagttt gaaaataaca gaaaattgca acaagcatcc ttccaattta
6841 gcagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa gcacaaattg
6901 aggccaccaa aaagctacaa caggaaatga tgaaagttaa gcaggcaatg ctcctagaag
6961 gtgggttctc tgagacagat gcagcccgcg gggcaatcaa cgcccccatg acaaaagctt
7021 tggactggag cgggacaagg tactgggctc ccgatgctag gactacaaca tacaatgcag
7081 gccgcttttc cacccctcaa ccatcggggg cactgccagg aagagctaat tttagggatg
7141 ctgtccctgc tcggggttcc tccagtaaat cttctaactc ttctactgct acttctgtgt
7201 actcaaatca aactacttca acgagacttg gttctacagc tggttctggt accagtgtct
7261 cgagcctccc gtcaactgca aggactagga gctgggttga ggatcaaagt agggatttgt
7321 cacctttcat gaggggggcc cataacatat cgtttgtcac cccaccatct agcagatcct
7381 ctagccaagg cacagtctca accgtgccta aagaggtttt ggactcctgg actggcgctt
7441 tcaacacgcg caggcagcca ctcttcgctc acattcgtaa gcgaggggag tcacgggcgt
7501 aatgtgaaaa gacaaaattg attatctttc ttttcttttt ctttagtg
//