Typing tool
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Typing tool
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Complete norovirus genomes
| PV282524 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5095
ORF2: 5076..6698
ORF3: 6698..7498
LOCUS PV282524 7559 bp RNA linear VRL 28-JUL-2025
DEFINITION Norovirus GII isolate TCH15-82-AP nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PV282524
VERSION PV282524.1
DBLINK BioProject: PRJNA1195114
BioSample: SAMN45209629
Sequence Read Archive: SRR31712884
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Bhamidipati,S.V., Surathu,A., Ramani,S., Atmar,R.L., Estes,M.K.,
Muzny,D.M., Cregeen,S.J. and Doddapaneni,H.
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2025) Molecular Virology and Microbiology, Baylor
College of Medicine, Alkek Center for Metagenomics and Microbiome
Research, 1 Baylor Plaza, Houston, TX 77030, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: VirMap v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="TCH15-82-AP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: Houston"
/collection_date="16-Feb-2015"
/note="genotype: GII.4"
gene <1..5095
/gene="ORF1"
CDS <1..5095
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="XPY62839.1"
/translation="MASNDASAAAAANSNNDIAKSSSDGVLSSMAVTFKRALGARPKQ
PPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVIQPEET
NTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
KVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
PLNILNILATCDWTFPGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAK
KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMPD
LKQALKNVAIKKCQIVYNGNTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEETASKDGCPK
PKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGTKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
QQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
EDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..985
/gene="ORF1"
/product="p48"
mat_peptide 986..2083
/gene="ORF1"
/product="NTPase"
mat_peptide 2084..2620
/gene="ORF1"
/product="p22"
mat_peptide 2621..3019
/gene="ORF1"
/product="VPg"
mat_peptide 3020..3562
/gene="ORF1"
/product="Pro"
mat_peptide 3563..5092
/gene="ORF1"
/product="RdRp"
gene 5076..6698
/gene="ORF2"
CDS 5076..6698
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XPY62840.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHVTGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 6698..7498
/gene="ORF3"
CDS 6698..7498
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XPY62841.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNTGRFSTPQPSVALPGRARDTVPARGFSSKSSNS
STATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNISF
VTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gatggcgtct aacgacgctt ccgctgccgc tgctgccaac agcaacaacg acatcgcaaa
61 atcttctagt gacggcgtgc tttctagtat ggctgtcact tttaaacggg ccctcggggc
121 gcggcctaaa cagccgcccc cgaaggaaat accacccaga cccccacgac cacccacacc
181 agaattggtt aaaaagatcc ctcctccccc acccaacggg gaggatgaac tagtggtttc
241 ttacagcgcc aaagacggcg tttccgggtt gcctgagctt accactgtca tccaaccgga
301 agaaaccaat acggcgttca gtgttccccc actcaaccaa agggagaaca gggacgccaa
361 ggaaccacta actggaacaa ttattgaaat gtgggatgga gaaatctacc attacggcct
421 gtacgtggaa cgaggtctta tacttggtgt gcataagcca ccggcagcca tcagccttgc
481 caaggtcgag ctaacaccac tctctttgtt ctggagacct gtgtataccc cccagtacct
541 catctctcca gacactctta ggagactaca tggagagtca ttcccctaca ccgcatttga
601 caacaattgc tacgccttct gctgttgggt attagaccta aacgactcat ggctaagtag
661 gagaatgatt cagagaacaa caggtttctt cagaccatac caggaatgga acaggaaacc
721 cctccccact atggatgact ccaaattgaa gaaggtagct aacatattct tgtgcacctt
781 gtcttcacta ttcaccagac ccattaagga cataataggg aaattgaaac ctcttaacat
841 cctcaatatt ctggctacat gtgattggac cttcccaggc atagtggaat ccctaatact
901 cttggcagaa ctctttggag ttttctggac acccccagat gtgtctgcga tgatcgcccc
961 cttactaggt gattatgaat tgcaaggacc tgaggacctt gcagtagaac tggtcccagt
1021 ggtgatgggg gggataggtt tggtgctagg atttaccaaa gagaaaattg gaaagatgct
1081 gtcgtccgct gcatccactt tgagagcctg taaagacctt ggtgcatacg gactggaaat
1141 tttgaaattg gtcatgaaat ggttcttccc aaagaaagag gaagcaaatg aactggctat
1201 ggtgagatcc atcgaggacg cagtgctgga cctcgaggcg attgaaaaca accacatgac
1261 caccctgctc aaagacaaag acagcttggc aacctacatg agaacccttg accttgagga
1321 ggagaaagct agaaaactct caaccaagtc tgcttcacct gatattgtgg gcacaatcaa
1381 ctctcttctg gcacgaatcg cagctgcacg ctccctagtg catcgggcga aagaggagct
1441 ctccagcagg ccgagacctg tcgttgtgat gatatcggga agaccaggga tagggaaaac
1501 tcaccttgcc agggagttgg ccaagaagat cgcagcctcc ctcacagggg accagcgtgt
1561 gggcctgatc ccacgcaatg gcgtcgacca ctgggacgca tacaagggtg aaagagttgt
1621 cctatgggac gactatggga tgagcaaccc catacacgat gccctcaggt tgcaggaact
1681 tgctgacact tgccccctca cgctaaattg tgacagaatt gagaacaaag gaaaagtctt
1741 tgatagtgat gccataatta tcaccaccaa tctggccaac ccagcaccac tggattacgt
1801 caattttgaa gcgtgctcga ggcgcattga cttcctcgtg tacgcggaag ctcctgaggt
1861 ggagaaggca aaacgcgact tcccaggcca acctgacatg tggaagaacg ccttcagtcc
1921 tgacttctca cacataaaac tggcactggc tccacagggt ggttttgaca agaacggcaa
1981 caccccgcat ggaaaaggtg tcatgaagac cctcaccact ggctccctca tcgcccgagc
2041 atcagggttg ctccatgaga ggctagatga atatgaatta caaggcccag cccttactac
2101 tttcaacttt gaccgtaaca agatacttgc ttttagacag cttgctgctg aaaacaagta
2161 tgggctgatg gacacaatga gagttggaaa acagctcaag gatgtcaaga ccatgccaga
2221 cctcaaacaa gcactcaaga atgtcgcgat caagaaatgc cagatagtgt acaatggtaa
2281 cacctacaca cttgaggccg acggcaaggg tagtgtgaaa gttgacaaag tgcaaagtgc
2341 cactgtgcaa accaacaatg aactagccgg cgccctacac catctaaggt gcgccagaat
2401 caggtactat gttaagtgtg tccaggaggc actgtattcc atcatccaaa tcgctggggc
2461 tgcgtttgtc accacgcgca tcgccaagcg catgaacata caaaatctct ggtctaagcc
2521 acaggtggaa gacacagaag agacggccag taaagatggt tgcccaaaac ccaaagatga
2581 tgaagagttc gtcgtttcat ccgacgacat caaaactgag ggcaagaagg ggaagaacaa
2641 gtccggccgc ggcaagaagc acacagcctt ctcaagtaaa gggctcagtg atgaggagta
2701 cgatgagtac aagagaataa gagaagaaag gaatggtaag tactccatag aagagtacct
2761 ccaggacaga gacaagtact atgaggaggt ggccattgcc agggcaactg aggaggactt
2821 ttgtgaagaa gaagaggcca aaatccggca gagaattttc agaccaacaa ggaaacaacg
2881 taaagaagag agggcctctc taggcttggt cacaggctca gaaatcagga agagaaaccc
2941 agaagacttc aaacccaagg gaaagctgtg ggctgatgat gatagaagcg ttgactacaa
3001 cgagaaactc aactttgagg ccccaccaag catctggtcg cggatagtca actttggttc
3061 aggttggggc ttctgggtct cccccagtct gttcataaca tcaacccatg ttatacccca
3121 aggtacaaaa gagttcttcg gagtccccat caaacaaatc cagatacaca aatcaggtga
3181 attctgccga ttgagattcc caaaaccaat cagaactgat gtgacgggca tgattctgga
3241 agaaggtgcg ccagaaggaa ccgtggccac actgctcatc aagagaccaa ctggagagct
3301 tatgcctttg gcagccagga tgggaaccca tgcaaccatg aagattcagg ggcgcacagt
3361 tggaggacaa atgggtatgc tcttgacagg atccaacgcc aagagtatgg acttgggcac
3421 aacaccaggc gactgcggtt gtccctatat ctacaaaaga gggaatgact atgtggtcat
3481 aggagtccat acagccgctg ctcgtggggg aaacactgtc atctgtgcca cccagggtag
3541 tgagggagaa gccacacttg aaggaggtga caacaaagga acgtactgtg gtgcaccaat
3601 cttgggccca gggagcgctc cgaagctcag caccaagact aagttttgga gatcatccac
3661 aacgccactc ccaccaggca cctacgagcc agcctacctc ggtggcaagg atcccagagt
3721 caaaggtggc ccttcattgc aacaagttat gagggaccag ctaaagccat tcacagaacc
3781 cagaggcaaa ccaccaagac caaatgtgtt ggaagctgcc aagaaaacca tcattaatgt
3841 tcttgaacaa acaattgacc caccccaaaa atggtcattc gcgcaagctt gcgcatccct
3901 tgacaaaacc acctccagcg gccatccgca ccacatgcgg aaaaacgatt gctggaatgg
3961 ggagtccttt acaggaaaat tggcagatca ggcctccaag gccaacctaa tgtttgaaga
4021 gggaaagaac atgactccag tctacacagg tgcacttaaa gatgaattgg tgaagactga
4081 caaaatttat ggtaagatca agaagaggct cctgtggggc tcggacctgg cgactatgat
4141 acggtgcgcc cgggcttttg gaggccttat ggatgaactc aaggcgcact gtgtcaccct
4201 tcctgtcaga gttggtatga acatgaatga agatggcccc ataatctttg agaagcactc
4261 cagatataga tatcactatg atgctgatta ctccagatgg gactcgacac aacaaaggga
4321 tgtgctagca gcagcactag aaatcatggt taagttctct ccagaaccac acttggccca
4381 gatagttgca gaagacctcc tttcccctag tgtaatggat gtgggtgact ttcagatatc
4441 aataagtgag ggactcccct ccggggtgcc ttgcacctcc cagtggaatt ccatcgccca
4501 ctggctcctc accctttgtg cactctctga agtcacagac ctgtcccctg acatcatcca
4561 ggccaactcc cttttctcct tctatggtga tgacgagatt gtgagtacag acataaagtt
4621 ggacccagag aagctgacag caaaactcaa ggagtacgga ctaaagccaa cccgccccga
4681 caaaactgaa ggaccccttg ttatctctga agatctggat ggcctgacat tcctccggag
4741 gactgtgacc cgtgacccag ctggctggtt tggaaaattg gaacaaagct caattctcag
4801 gcaaatgtac tggaccaggg gtcccaacca tgaagatcca tctgaaacaa tgataccaca
4861 ctcccaaagg cccatacaat tgatgtcctt gctaggtgag gctgcactcc acggcccagc
4921 attttacagc aaaattagca aattggtcat tgcagaattg aaagaaggtg gcatggattt
4981 ttacgtgccc agacaagagc caatgtttag atggatgaga ttctcagatc tgagcacgtg
5041 ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca
5101 acccatctga tgggtccgca gccaacctcg tcccagaggt caataatgag gttatggctc
5161 tggagcccgt tgttggtgcc gctattgcgg cacctgtagc gggccaacaa aatgtaattg
5221 acccctggat tagaaacaat tttgtacaag cccctggtgg agagtttaca gtatccccta
5281 gaaacgctcc aggtgaaata ctatggagtg cgcccttagg ccctgattta aatccctacc
5341 tatcccattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtgattc
5401 tcgcggggaa cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaattttc
5461 caactgaagg cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta
5521 ggcaactcga acctgtgttg attcctttac ccgatgttag gaataatttc tatcattata
5581 atcaatcaaa tgaccccact attaagttga tagcaatgtt gtatacacca cttagggcta
5641 ataatgctgg ggacgatgtc ttcacagtct cttgccgggt cctcacgaga ccgtcccccg
5701 attttgattt catatttcta gtgccaccca cagttgagtc aagaactaag ccattctctg
5761 tcccggtttt aactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt
5821 tgttcacggg tcccagcagt gcctttgttg ttcaaccaca aaacggcagg tgcacgactg
5881 atggcgtgct cctaggcacc acccaactgt ctcctgtcaa catctgcacc ttcagagggg
5941 atgtcaccca cgtcacaggt agtcacaact acacaatgaa tttggcttct caaaattgga
6001 acaattacga cccaacagaa gaaatcccag cccctctagg aaccccagat tttgtgggga
6061 agattcaagg tatgctcacc caaaccacaa gggcagatgg ctcaacacgc ggccacaaag
6121 ctacagtgta cactgggagc gccgattttg ctccaaaact gggtagagtt caatttgaaa
6181 ctgacacaga ccatgatttt gaagctaacc aaaacacaaa gttcacccca gtcggcgtca
6241 tccaagatgg tagcaccacc caccgaaatg aaccccaaca gtgggtgctc ccaagttact
6301 caggcagaaa tactcataat gtgcacctgg cccccgctgt agcccccact ttcccgggtg
6361 agcaacttct cttcttcagg tccaccatgc ccggatgcag cgggtacccc aacatggatt
6421 tggattgtct gctcccccag gaatgggtgc agtacttcta ccaagaggca gccccagcac
6481 aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgagt
6541 gtaagcttca taaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta
6601 tcccccctaa tggttacttt aggtttgatt cctgggtcaa ccagttctac acgcttgccc
6661 ccatgggaaa tggaacgggg cgtagacgtg tagtataatg gctggagctt tctttgctgg
6721 attagcatct gatgtccttg gctctgggct tggttccctt atcaatgctg gggctggggc
6781 catcaaccaa aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt
6841 tagcagtaat ctacaacagg cttcctttca acatgataaa gaaatgctcc aggcacaaat
6901 tgaggccacc aaaaagttac aacaggaaat gatgaaagtt aagcaggcaa tgctcctaga
6961 gggtgggttc tctgagacag atgcagcccg cggggcaatc aacgccccca tgacaaaagc
7021 tctagactgg agcgggacaa ggtactgggc tcccgatgct aggattacaa catacaatac
7081 aggccgcttt tccacccctc aaccatcggt ggcactgcca ggaagagcta gggatactgt
7141 ccctgctcgg ggtttctcta gcaaatcttc taattcttct actgctactt ctgtgtattc
7201 aaatcaaacc atttcaacga gacttggttc tacagctggt tctggcacca gtgtctcgag
7261 cttcccgtca actgcaagga ctaggagctg ggttgaggat caaagtagga atttgtcacc
7321 ttttatgagg ggggcccaca atatatcatt tgtcacccca ccatctagca gatcctctag
7381 ccaaggcaca gtctcaaccg tgcctaaaga gattttggac tcctggactg gcgctttcaa
7441 cacgcgcagg cagcctctct tcgcccacat ccgtaagcga ggggagtcac gggtgtaatg
7501 tgaaaagaca aaattgatta tctttctttt tctttttctt tagtgtcttt taaaaaaaa
//