Typing tool
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Typing tool
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Complete norovirus genomes
| PV282520 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5092
ORF2: 5073..6695
ORF3: 6695..7501
LOCUS PV282520 7555 bp RNA linear VRL 28-JUL-2025
DEFINITION Norovirus GII isolate BTH19-9-PM nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PV282520
VERSION PV282520.1
DBLINK BioProject: PRJNA1195114
BioSample: SAMN45209636
Sequence Read Archive: SRR31712893
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7555)
AUTHORS Bhamidipati,S.V., Surathu,A., Ramani,S., Atmar,R.L., Estes,M.K.,
Muzny,D.M., Cregeen,S.J. and Doddapaneni,H.
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2025) Molecular Virology and Microbiology, Baylor
College of Medicine, Alkek Center for Metagenomics and Microbiome
Research, 1 Baylor Plaza, Houston, TX 77030, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: VirMap v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7555
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BTH19-9-PM"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: Houston"
/collection_date="17-Dec-2019"
/note="genotype: GII.4"
gene <1..5092
/gene="ORF1"
CDS <1..5092
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="XPY62827.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDEPQKPPRPPTPELVERIPPPPPNGEEEQEPVIRYEVKSGITGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELTPLSLYWRVVYTPQYLISPETLRRLNGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSALFTRPIKDLIGKI
RPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARKLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME
ELKQAIRNVTIRRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESEAKEETPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGIAEAFGVPIKQIQIHKSGEFCRFRFPKPIRSDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM
VRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVKFSAEPQLAQIVAEDLLAPSVVDVGDFKITISEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGRLDQSSILRQMYWTRGPNHE
DPSETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..988
/gene="ORF1"
/product="p48"
mat_peptide 989..2086
/gene="ORF1"
/product="NTPase"
mat_peptide 2087..2617
/gene="ORF1"
/product="p22"
mat_peptide 2618..3016
/gene="ORF1"
/product="VPg"
mat_peptide 3017..3559
/gene="ORF1"
/product="Pro"
mat_peptide 3560..5089
/gene="ORF1"
/product="RdRp"
gene 5073..6695
/gene="ORF2"
CDS 5073..6695
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XPY62828.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSSDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEVNQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRSTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVV"
gene 6695..7501
/gene="ORF3"
CDS 6695..7501
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XPY62829.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARATTYNAGRFSTLQPSGTLPGRTNLRDAAPARGPSNKSS
NSSTVTSVNSNQTISTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRDLSPFMRGAHNI
SFVTPPSSKSSSHGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 ggcgtctaac gacgctaccg ttgccgttgc ttgcaacaac aacaacgaca aggaaaaatc
61 ttcaggtgaa ggcttattca caaatatgtc ttccacctta aagaaagccc tcggggctag
121 gcctaaacag cctgccccga gagacgaacc acaaaagccc ccaagaccac caactcccga
181 gttggtcgag aggatacccc ctcctccacc taatggcgaa gaagaacaag aaccagtcat
241 taggtatgag gtcaaaagtg ggattactgg cctgcccgag ctcacaacag tcccccaacc
301 ggacgtggcc aacacagcat tcagtgttcc accactgagt ttgagagaaa acagggaggc
361 caaggaaccg ttgacagggg caatattaga gatgtgggac ggagagatat accactacgg
421 cctgtacgtg gagaaaggct tagtgttggg tgtgcacaaa ccacctgcag ccataagcat
481 ggcaagagtg gagctgacgc cgctgtcatt gtactggcgt gtggtgtaca ctccccaata
541 cctcatctcc cctgaaaccc tcaggaggct caacggagag acgttccctt acaccgcttt
601 cgacaacaac tgctatgcct tttgctgctg ggtgttagac ctcaatgact catggcttag
661 caggaggatg gtgcaaagaa caacgggctt cttcagacct taccaagagt ggaacagaaa
721 acccctgccc accatggatg actccaaaat taagaaggta gcaaatatat tcctatgttc
781 attgtctgca ttattcacca gacccataaa agacctcata ggaaaaatta gaccattaaa
841 catattgaac atcctggcaa cgtgtgactg gacgtttgcc ggaatagtgg agtctctgat
901 attacttgct gaactcttcg gagttttctg gacaccccca gatgtgtctg ctatgatcgc
961 tcccttactt ggggactacg agttgcaagg gccagaagac ctcgccgttg aactcgtacc
1021 tgtggtaatg ggagggattg gtttggtgtt gggattcacc aaagagaaaa ttggcaaaat
1081 gttgtcctca gcagcatcaa cactcagagc ttgcaaagac cttggtgcct atggcctgga
1141 gatactcaag ttggtcatga agtggttctt cccaaagaaa gaggaggcca atgagctagc
1201 catggtgagg gccatagagg atgccgtact agatcttgag gcaatagaaa ataaccacat
1261 gacaaccctg ttgaaagata aagacagctt agcaacatac atgaaaacac tggacatgga
1321 ggaggagaaa gccagaaagt tgtccacaaa atctgcatcc cctgacatag ttgggacaat
1381 caacgctctg ctggcccgaa tagcagcggc caggtcattg gtccacaggg ccaaggaaga
1441 gttgtctagc aggataagac cagtagttgt tatgatatct ggcaaaccag gaataggcaa
1501 aactcatctg gccagggagg tggcaagaaa ggtggcatcc actctcacag gggatcaaag
1561 agtcgggctc ataccaagaa acggagtgga ccattgggat gcatacaaag gtgagagagt
1621 cgtgctgtgg gacgattatg gcatgagtaa ccccattcat gatgctcttc gcatacaaga
1681 attggctgat acgtgtcccc ttaccttaaa ttgtgacaga attgaaaaca agggaaaagt
1741 ttttgacagt gaagttataa taataacaac aaaccttgcc aacccagccc cacttgatta
1801 tgtcaacttt gaggcctgtt ccaggagaat tgatttcctg gtgtacgctg aggcaccaga
1861 agtggaaaag gcaaaacggg actttcctgg tcagccagat atgtggaagg acgccttcaa
1921 gccggacttt tcacacatca agttacagct tgcacctcag ggcggctttg acaagaatgg
1981 caacaccccg catgggaaag gagtgatgaa gaccctcact accggttctc tgattgcccg
2041 tgcatcaggc ctattgcatg agaggatgga tgaatttgag ctccaaggcc ccacaatcac
2101 caccttcaat ttcgaccgaa acagaatcac agcattcaga caattggctg cagaaaacaa
2161 gtatggattg gtggacacca tgaaagttgg caatcaacta aaaggagtaa aaaccatgga
2221 agaactcaaa caagcaatta ggaatgtgac catcaggagg tgccggatca tctacggtgg
2281 ctccacgtat gaccttgaat ctgatggcaa gggcaaagtt ttggtggaaa aggtcaaaaa
2341 cacctctgta cagaccaaca acgagttggc cggggccttg caccatctca aacatgcccg
2401 aatcaggtac tatgtcaaat gtgtgcaaga agcagtctat tctatcatac aaattgccgg
2461 cgctgcgttt gtcaccacac gcattgcacg ccgcatgaac atacaagagc tctggtcgaa
2521 gccacaatta gatcaaaatg agtcagaggc taaggaagag acccccaagt cagaagatga
2581 cgagttcatc atatcttcta aggacatcaa ggaggaagga aagaagggca aaaacaaaac
2641 tggccgtggc aagaaacaca ctgcattctc cagcaagggc ttgagcgatg aggagtatga
2701 cgagtacaag aggataagag aagagagaaa tgggaagtac tctatagagg agtatcttca
2761 agacagagac aggtactatg aggagctcgc cattgccaag gccacggaag aagacttctg
2821 tgaagaggag gagatcaaaa tccgtcagag gattttccgt cccaccagga aacaaaggaa
2881 ggaagagaga gccacattag ggctagtgac aggttcagaa atcagaaaaa gaaaccctga
2941 tgacttcaag cccaaaggga agctatgggc cgatgacaac agaagtgttg actacaatga
3001 gaaactggac tttgaggccc ccccaagcat atggtctagg attgtgagct tcggttctgg
3061 ctggggcttc tgggtatcac caagcctgtt cataacatca acccatgtaa tccccgctgg
3121 catagcagaa gcatttggag tccccatcaa acaaatccaa atccacaaat caggtgaatt
3181 ttgccgattc agattcccaa aaccaattag atcagatgta acaggaatga tcttggaaga
3241 aggtgcgcct gaaggcaccg tggcgactgt gctcatcaaa cgccccaccg gagagctcat
3301 gcctcttgca gccagaatgg gaacacacgc aaccatgaaa attcaaggcc gcatggttgg
3361 cggacagatg ggcatgttgc tcactggatc aaatgctaaa ggaatggatt tgggaacaac
3421 tcccggtgat tgtggctgtc cttacatcta taaaaggggc aatgactata tagtcattgg
3481 ggtacacact gcggcagccc gtggtggaaa caccgtcatc tgtgccacac agggaagtga
3541 gggtgaggca actcttgagg gtggagatga caaaggaaca tactgtgggg cacccattct
3601 aggccctggg ggtgcaccaa aattgagtac caaaaccaaa ttttggaggt catcgaacac
3661 gcctctccca ccagggacat acgaacctgc ctacctcggt ggccgtgatc cgcgtgttaa
3721 gggtgggccc tccttgcagc aggtaatgag agaccagttg aagccattta ctgaacccag
3781 gggcaaacct ccaagaccaa gtgtattgga agcagccaaa caaaccatta tcaatgtcct
3841 cgaacaaacc ctggaccctc cacaaaaatg gacatacgca caggcgtgtg cctcacttga
3901 caaaaccacc tccagcgggc atccccatca cgtccgaaag aatgaattct ggaatggtga
3961 gacctttact ggtaaattgg cagaccaagc atcaaaagca aacctaatgt ttgaggaagg
4021 gaaacacatg acaccagtgt atacagcagc actcaaggac gagctagtca agactgagaa
4081 aatctatgga aagatcaaga aaagactgct ctggggttcc gacttgtcca ccatggtccg
4141 gtgcgctaga tcatttggtg ggctcatgga cgagatgaag gcacactgca tctcactccc
4201 agtacgagtt ggcatgaata tgaatgaaga tggcccaata atatttgaga aacattccag
4261 atacaaatat cattatgatg cagactactc ccgttgggat tcaacacaac agagggcggt
4321 actagcagca gccctggaaa tcatggtcaa attctctgca gaaccacaat tggcacaaat
4381 agtcgctgag gatctgctgg cccctagtgt agtagatgta ggagacttta aaatcacaat
4441 aagtgaaggg ctcccatctg gtgtgccatg cacttcccaa tggaattcca tcgcacactg
4501 gctgctaact ctctgtgcct tgtccgaagt caccaaactg tcccctgaca ttatacaagc
4561 aaattccatg ttctcatttt acggtgatga cgagattgtc agcaccgaca taaaattgga
4621 tcctgaacag ttaaccgcca aattgaagga gtacggcctg aaaccaaccc gcccagacaa
4681 gactgaggga cctctgatca ttagtgaaga tttgaacgga ctcactttcc tccgaaggac
4741 ggtgactcgt gacccagctg gctggtttgg aagactggac caaagctcaa ttttgagaca
4801 gatgtactgg actagaggac caaaccatga agaccccagt gagacaatga taccccactc
4861 tcaaagaccc atacagctca tggcattgct tggtgaagcc tctctccacg gaccctcttt
4921 ctacagtaaa atcagcaaat tggtcataac tgagctcaag gaaggtggga tggactttta
4981 cgtgccaagg caggaaccca tgttcaggtg gatgaggttt tctgacttga gcacgtggga
5041 gggcgatcgc aatctggctc ccaattttgt gaatgaagat ggcgtcgagt gacgccaacc
5101 catctgatgg gtccgcagcc aacctcgtgc cagaggtcaa caatgaggtt atggctttgg
5161 agcccgttgt tggtgccgct attgcggcac ctgtagcggg ccagcaaaat gtaattgacc
5221 cctggattag aaataatttt gtacaagccc ctggtgggga gtttacagtg tcccctagaa
5281 acgctccagg tgaaatacta tggagcgcgc ctctaggccc tgacctaaac ccctacctat
5341 cccatttggc cagaatgtac aatggttatg caggtggttt tgaagtgcag gtaatcctcg
5401 cggggaatgc gttcaccgcc gggaagatca tatttgcagc agtcccacca aactttccaa
5461 ctgaaggctt aagtcctagt caggttacta tgtttcccca tataatagta gatgttagac
5521 aattagaacc tgtgctgatt cccttacccg atgtcaggaa taatttctat cattacaatc
5581 agtcaagtga ttccactatt aagttgatag caatgttgta tacaccactt agggctaata
5641 atgctgggga tgatgttttc acagtttcgt gccgagttct cacgagacca tcccccgatt
5701 ttgatttcat atttttagtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc
5761 cagttctaac tgttgaggag atgaccaatt caagattccc cattcctttg gaaaagttgt
5821 tcacgggccc cagcagtgcc tttgttgttc aaccacaaaa cggaaggtgc acaactgatg
5881 gagtgctcct aggcaccacc cagctgtctc ctgtcaacat ctgcaccttc aggggggatg
5941 tcacccacat cacaggtagt cacaactaca caatgaattt ggcttctcaa aattggaata
6001 actatgaccc aacagaagaa atcccagccc ctctaggaac tccagatttt gtggggaaga
6061 ttcaaggcat gctcacccaa accacaagga cagatggttc aacacgcggc cacaaagcta
6121 cagtgtacac tgggagcgcc gactttgctc caaaactggg tagagttcaa tttgaaactg
6181 acacaaacca tgattttgaa gttaatcaaa acacaaagtt caccccagtc ggtgtcatcc
6241 aagatggtag caccacccac cgaaacgaac cccaacagtg ggtgctccca agttactcag
6301 gcagaagcac tcacaatgta cacctggccc ccgctgtagc ccccaccttt ccgggtgagc
6361 aacttctctt cttcagatcc accatgcccg gatgcagcgg gtatcccaac atggatttgg
6421 actgcctgct cccccaggaa tgggtgcagt acttctacca agaggcagcc ccagcacaat
6481 ctgatgtggc tctgctaaga tttgtgaacc cagacacagg tagggttttg tttgagtgca
6541 agctccacaa atcaggctat gttacagtgg ctcatactgg ccaacatgat ttggttatcc
6601 cccccaatgg ttactttaga tttgattctt gggtcaacca gttctacacg cttgccccca
6661 tgggaaatgg aacggggcgt agacgtgtag tataatggct ggagctttct ttgctggatt
6721 ggcatctgat gtccttggct ctggacttgg ttcccttatc aatgctgggg ctggggccat
6781 caaccaaaaa gttgagtttg aaaataatag aaaattgcaa caagcatcct tccaatttag
6841 cagcaatctg caacaggctt cctttcaaca tgataaagag atgctccaag cacaaattga
6901 ggccaccaaa aagctacaac aggaaatgat gaaggttaag caggcaatgc tcctagaggg
6961 tgggttctct gagacagatg cagcccgcgg ggcaattaac gctcccatga caaaagcttt
7021 ggactggagc gggacaaggt actgggctcc cgatgctagg gctacaacat acaatgcagg
7081 ccgcttttcc acccttcaac catcggggac actgccagga agaactaacc ttagggatgc
7141 tgcccctgct cggggaccct ccaacaaatc ttctaactct tctactgtca cctctgtgaa
7201 ctcaaatcaa actatttcaa cgagacttgg ttctacagct ggttctggga ccagtgtctc
7261 gagcctcccg tcaactgcaa ggactaggag ctgggttgag gatcaaagta gggacttgtc
7321 acctttcatg aggggggccc acaacatatc atttgtcacc ccaccatcca gcaaatcctc
7381 tagccacggc acagtctcaa ccgtgcctaa agagattttg gactcctgga ctggcgcttt
7441 caacacgcgc agacagcctc tcttcgctca cattcgtaag cgaggggagt cacgggtgta
7501 atgtgaaaag acaaaactga ctatttttct ttttctttag tgtcttttaa aaaaa
//