Typing tool
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Typing tool
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Complete norovirus genomes
| PV282515 | GII.17 | |
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| GII.P13 |
ORF1: 1..5101
ORF2: 5082..6707
ORF3: 6707..7486
LOCUS PV282515 7525 bp RNA linear VRL 28-JUL-2025
DEFINITION Norovirus GII isolate 1295-44-AP nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PV282515
VERSION PV282515.1
DBLINK BioProject: PRJNA1195114
BioSample: SAMN45209634
Sequence Read Archive: SRR31712877
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7525)
AUTHORS Bhamidipati,S.V., Surathu,A., Ramani,S., Atmar,R.L., Estes,M.K.,
Muzny,D.M., Cregeen,S.J. and Doddapaneni,H.
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2025) Molecular Virology and Microbiology, Baylor
College of Medicine, Alkek Center for Metagenomics and Microbiome
Research, 1 Baylor Plaza, Houston, TX 77030, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: VirMap v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7525
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="1295-44-AP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: Houston"
/collection_date="10-Sep-2005"
/note="genotype: GII.17"
gene <1..5101
/gene="ORF1"
CDS <1..5101
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="XPY62812.1"
/translation="ASNDASAAVAGKNNNNDNAKSSSDGLFSNMSVTFKKALGARPKQ
PPPGETKQISKPPRPPTPELVKRIPPPPPNGEDEPKVVYKVGEGVSGLPDLTTVTQPD
AQCTAYSVPPLSQREAGDAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAIS
LAKIELTPLSLYWRVVYTPQYLIAPDTLKNLNGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQEWNRKPLPTMDEPKIKKVANAVLCALSSLFTRPIKDIIGK
LKPMNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFEMQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAREL
AKKVATTLAGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLSNPAPLDYVNFEACSRRIDFLVYADAPDIEK
AKRDFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKSLTVGSLIARA
SGLLHERMDEFELQGPGLSTFNFDRNKVAAFRQLAAENKYGMLDTLRVGNQLKGVKTM
DELKRAINSITIKKCQIVYNGCTYTMESDGRGKVLVDKVQNTTVQTNNELAGALHHLR
SARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPAEDNDESEDKGGC
PKPRDEDEFTVDSKDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEAKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPRGKLWADDDRSVDYNEKISFEAPPSIWSRIVNFGSGWGFWVSS
SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEG
TVATILVKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPNPSVLESAKRTIINVLEQTIDPPQKWTYAQACASLDKTTSSGYPHHVRKNDYW
SGETFTGKLADQASKANLMYEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
STMIRCARAFGGLMDELKAHCITLPVRVGMNMNEDGPIIFEKHSRYNYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCT
SQWNSISHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTKGP
NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE
SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..991
/gene="ORF1"
/product="p48"
mat_peptide 992..2089
/gene="ORF1"
/product="NTPase"
mat_peptide 2090..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RdRp"
gene 5082..6707
/gene="ORF2"
CDS 5082..6707
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XPY62813.1"
/translation="MKMASNDAAPSNDGAAGLVPEINTETLPLEPVAGAALAAAVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEVLLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNRPSERMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTISELTNSRFPAPIDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
QLLPTGICAFRGKISADVQNSHQDRWHMQLTNLNGTPFDPTDDVPAPLGTPDFTGLLF
GVASQRNVGGTGNNTTRAHEVVIATTSTQFVPKLGSINFGSESDDFQVGPPTKFTPVG
IKVETGHPFRQWDLPNYSGALTLNMNLAPPVAPNFPGEQLLFFRSNVPCAGGVSEGII
DCLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPL
VVPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6707..7486
/gene="ORF3"
CDS 6707..7486
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XPY62814.1"
/translation="MAGAFIAGLAGDMLTSAVGSLANAGANAITQKIDFENNKQLQTA
SFQHDKDMLRAQVDATKQLQAEMIAIKQGILTAGGFSPADAARGAVGAPMTKVLDWSG
TRYWAPNSTKTTSYSGQFTSAPVHTPNFNSKPRPPAKTQPSSPSSGSVYSLSTQSTSL
PGPSSSGSSVSSVSTQSTKLSSVSSMSRTADWVNQQRSLSPYMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV"
ORIGIN
1 ggcgtctaac gacgcttccg ctgccgttgc tggcaaaaac aacaacaacg acaacgcaaa
61 atcttcaagt gacggattgt tttctaacat gtctgtcact tttaagaaag ccctcggggc
121 gcggcccaaa cagccgcccc cgggagaaac aaagcaaatc tctaaaccgc caagaccgcc
181 gacaccggaa ttggtgaaga gaataccccc acccccaccc aatggcgaag acgagccaaa
241 agtggtgtac aaggtgggag aaggtgtgtc tgggttgcct gacttaacaa ctgtcacgca
301 gcctgatgca caatgtacag cctatagcgt ccccccgctc agtcaaagag aggcgggtga
361 cgcgaaggaa ccattacctg gctccatctt ggagatgtgg gatggtgaga tctatcatta
421 tgggctgtac gtggagcgtg gccacgtgct tggggtacac aaaccacccg ctgcgataag
481 cctcgctaaa attgagttaa caccattgtc tctttattgg agggtggttt acacccccca
541 gtacttgata gctccagaca ctttgaagaa cctgaatgga gaatcattcc catacacggc
601 ttttgacaac aactgctatg ctttttgctg ctgggttttg gaccttaatg attcttggct
661 cagcaggaga atgatccaaa ggaccactgg tttcttcagg ccttaccagg agtggaacag
721 aaagccctta ccaaccatgg acgagcccaa gatcaagaaa gttgcaaacg ccgtcctatg
781 tgctctctct tcactcttca ccagacccat taaagacatc atcggcaagc taaaaccaat
841 gaacatcctc aacatactgg caacttgtga ctggaccttt gcaggcatag tggaatccct
901 tattcttctt gctgaactct ttggggtgtt ctggacgccc ccagatgtgt ctgcgatgat
961 cgctcccttg ctcggtgatt tcgaaatgca gggccctgaa gatcttgccg tggagctcgt
1021 gcccgtggta atgggaggga taggtctggt gttgggattc accaaggaaa agatcggcaa
1081 gatgctttca tcagctgcat ccacactcag ggcttgcaaa gatctagggg cttatggatt
1141 ggaaatactc aaattagtta tgaaatggtt ctttcctaag aaagaagagg ccaacgagct
1201 ggccatggta agggccattg aggatgctgt gttagacctg gaggcaatag agaacaacca
1261 tatgaccact ctcctcaagg acaaagacag tcttgccaca tacatgagaa ccctcgactt
1321 ggaggaagag aaagcaagaa agctctccac caaatctgca tcaccagaca tcgtgggcac
1381 aataaactca ctgttggcaa ggattgcagc agctcggtca ctagtccaca aagcaaaaga
1441 agagctgtca agcagacaaa ggcctgttgt cgttatgata tctggcaggc cgggcatagg
1501 gaaaactcac cttgccagag agctggccaa gaaagttgca acaacactgg caggtgacca
1561 aaggatcggc ctggtgccca ggaatggtgt ggatcattgg gacgcctaca aaggagaaag
1621 agtggtgctg tgggacgact atggcatgag caaccccata caggatgccc taagactcca
1681 agaactggct gacacctgcc ctctaacact taactgtgac agaattgaaa acaagggaaa
1741 ggtgtttgat agcgatgcca taataataac aaccaacctc tcaaatccag cacccttaga
1801 ctatgtcaac tttgaggcct gctccaggcg catagacttc ttagtgtatg cagatgcacc
1861 agatattgag aaggccaagc gagatttccc tggtcagcca gacatgtgga aagaccatta
1921 cagaccagac ttctcacaca tcaagctcca actggcccca cagggcggtt ttgacaagaa
1981 cggcaacacc ccacacggta agggtgtgat gaagtccttg actgttgggt cactgatcgc
2041 cagagcctct ggcctgcttc atgagagaat ggatgaattt gagctacagg gtcctggtct
2101 gtcaactttc aactttgacc gcaacaaggt cgctgccttt agacaactgg cagctgaaaa
2161 taagtatggc atgttggaca cactgagagt aggaaaccag ctaaagggtg tcaaaaccat
2221 ggatgagctg aaacgagcca tcaatagcat caccatcaaa aagtgccaga tagtgtataa
2281 tggatgcacc tacactatgg aatctgatgg acgtggcaaa gtgttagttg acaaagtgca
2341 aaacacaaca gttcaaacca acaatgagct cgcgggggcc ctgcaccacc tcaggtccgc
2401 aagaataaga tactatgtca agtgcttcca agaggcaatc tactccctac tccaaattgc
2461 tggtgcagct tttgtcacct cacgcatagt gaggcgcatg aacatctcaa acctatggtc
2521 gaagccacct gctgaagaca atgatgaatc agaggacaaa ggagggtgtc ccaaacccag
2581 agatgaggat gagttcaccg ttgattccaa agacatcaaa gtggaaggaa agaaaggcaa
2641 gaacaaatct gggagaggaa agaaacacac agctttctcc agcaagggcc tcagtgatga
2701 agaatatgat gagtacaaaa gaatcagaga agaaagaaat ggcaagtact cgatagaaga
2761 gtatctccaa gatagggaca ggtattatga ggaacttgcc attgctaaag ccactgagga
2821 agacttttgt gaagaggagg aggccaaaat ccgccagagg atcttccgtc ctaccaggaa
2881 acaacggaag gaggagagag ccactctcgg actcgtcacg gggtcagaaa tcaggaagag
2941 gaacccggat gacttcaaac caagaggaaa actgtgggct gatgatgaca ggagtgtgga
3001 ttataatgag aaaataagtt ttgaagcacc accaagcatc tggtcaagaa tagttaattt
3061 tggttcaggc tgggggttct gggtgtcctc aagccttttc ataacctcaa cccatgtgat
3121 accgaagggg atcacggagg cttttggtgt gcccatcaac caaatacaaa ttcacaagtc
3181 aggagagttc tgtcgcctga ggttcccaaa acccatcagg acggatgtga gtgggatgat
3241 cttggaggaa ggtgcccctg agggaaccgt cgcaactatc cttgtcaaac ggccgacagg
3301 ggagttgatg cccttggctg ctagaatggg aacccatgcc acaatgaaga tccaagggag
3361 aatggtgggt ggccagatgg gcatgttgct caccggctca aacgccaaga gcatggacct
3421 cggcacaaca ccaggtgatt gtgggtgccc ttacatatac aagagaggca acgactttgt
3481 ggtcatcggc gtgcacaccg cagcagcacg cggaggcaac acagtcatat gtgccacaca
3541 aggaagtgaa ggtgaagcca ctcttgaagg gggagacaac aagggtactt actgtggagc
3601 ccctatcctg ggtcctggca acgcaccaaa attgagcacc aaaacaaaat tctggagatc
3661 ttccaatgca ccactcccac caggtaccta tgagccagcg tatctaggtg gaaaagaccc
3721 acgagtgaag ggaggtccgt ccttgcaaca agtcatgaga gaccagctca agcctttcac
3781 tgaacccaga gggaaaccac caaacccaag tgttctggaa tcggcaaaga gaaccatcat
3841 caacgttttg gaacaaacta ttgacccacc ccaaaagtgg acatatgccc aggcatgtgc
3901 atctctcgac aaaacaactt ccagcggtta cccacatcat gttcgcaaga atgactactg
3961 gagtggtgag acattcacag gcaaactggc agatcaagct tcaaaggcaa atcttatgta
4021 tgaggaagga aaacacatga caccggtgta caccgcggcc ctcaaggatg aactagttaa
4081 aactgacaaa atctatggta agatcaagaa gaggctactg tggggttctg acctttccac
4141 catgatccga tgtgctaggg cattcggtgg cctcatggat gaactcaaag cacactgcat
4201 cacccttcct gtcagagttg gcatgaacat gaatgaagat ggaccaataa tatttgagaa
4261 acactccaga tacaactacc attatgatgc agactactcc cgttgggatt ctacacaaca
4321 acgggcggtg cttgcagcag cacttgaaat tatggtgaga ttttctgctg agccacaatt
4381 ggcgcagata gtggctgagg acctgctttc accaagtgtg gttgatgtgg gtgatttcaa
4441 aattacaatc aatgagggcc ttccatccgg cgtgccttgc acgtcccagt ggaactcaat
4501 ctcccactgg ttgctcacat tgtgtgcctt atctgaagtg acaggactag gtcctgacat
4561 catacaggcc aactccatgt actctttcta tggtgatgat gaaattgtga gcactgacat
4621 aaaattggac ccagaaaaat taactgcaaa actcaaagag tatggcctca agcccactcg
4681 tcctgacaaa actgaggggc cattggtgat tagtgaagac ttgaacgggt tgacattcct
4741 tcgccgcact gtgacccgtg atccagcagg ctggtttgga aaactagatc aaagctctat
4801 cctcaggcaa ttgtattgga caaaaggacc caaccatgaa gaccccagtg aaaccatgat
4861 accacatgca cagaggcccg tacaactcat ggcactacta ggagaatcct ccctacatgg
4921 accttcattt tacagcaaag ttagtaaatt ggttatatct gaacttaagg agggaggaat
4981 ggatttttat gtgcccagac aagagtcaat gttcagatgg atgaggttct cagatctaag
5041 cacatgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg
5101 acgccgctcc atctaatgat ggtgctgcgg gcctcgtccc agagatcaac accgagaccc
5161 ttcccctgga accagtggct ggtgcagctc ttgctgcggc tgtcactggt caaaataata
5221 taattgatcc ctggattaga acaaattttg tacaagcacc caatggggag ttcactgttt
5281 cacctaggaa ttccccagga gaagtcctcc taaatttaga attaggtcct gatttaaatc
5341 cttatttggc acacttatct agaatgtaca atgggtatgc tggtggagtg gaggtccagg
5401 ttctcctagc agggaacgcg ttcaccgctg gaaagatcct cttcgctgcc gtaccgccaa
5461 atttcccagt tgaattctta agtcctgccc aaatcactat gctcccacat ttgatagttg
5521 acgtcaggac ccttgagcca atcatgatac ccctccccga cgtgagaaac accttcttcc
5581 attacaataa taggccctct gagcgtatgc gtttggtggc catgttgtac acacccctga
5641 gatccaacgg ttcaggtgat gatgtcttca cagtctcatg cagagtgcta actagaccca
5701 ctccagattt tgaatttacc tacctagttc caccctcagt agagtctaag acaaagcctt
5761 tctctctccc catcttaacc atttctgaat tgactaattc aaggtttcca gcacccattg
5821 attcattgtt tactgcccaa aataacaatc ttaatgtcca atgtcagaat ggtcggtgca
5881 cactagatgg tgagttgcag ggaaccaccc agctgctccc aactggaata tgtgccttca
5941 gagggaaaat atcagcagat gtgcaaaaca gtcaccaaga caggtggcac atgcagttga
6001 caaatctcaa tggaacccca tttgacccaa cagatgatgt cccagctccg cttggcaccc
6061 ctgacttcac aggtctactg tttggggttg caagtcaaag aaacgttggt ggaacaggta
6121 acaacactac cagggcccac gaggtagtga tagcaacaac tagcacacaa tttgttccaa
6181 aattgggttc tattaatttt gggagtgaaa gtgatgattt tcaagtgggc ccaccaacca
6241 aattcacacc agttggaatc aaagttgaaa ccgggcatcc tttcagacaa tgggacctac
6301 ctaactattc tggagcactg accctcaaca tgaaccttgc cccacctgtt gccccaaact
6361 tcccaggtga gcagctgctc ttctttagat caaatgttcc ttgtgctggt ggtgtcagtg
6421 agggtatcat tgactgccta ctgcctcaag agtggataca acatttctac caggaatccg
6481 ctccatccca atcagatgtg gcactgatca gatatgtcaa ccctgacacg ggccgcactc
6541 tctttgaggc aaaactccac aggactggtt acattactgt tgctcactct ggtgactatc
6601 ctcttgttgt tccttccaat ggctatttca gatttgattc ttgggtaaat caattttact
6661 cactcgcccc catgggaact gggaatgggc gcaggagagt gcagtaatgg caggagcttt
6721 tatagcaggt cttgcaggtg acatgctcac ctctgctgta ggctcactgg cgaatgccgg
6781 agcaaatgcc ataacacaga aaattgactt tgaaaacaac aaacaacttc aaacagcctc
6841 ctttcaacat gacaaagata tgctccgcgc acaagtggat gcaaccaagc agctgcaggc
6901 agaaatgatt gccatcaaac aggggatctt gaccgctggc ggcttctccc ctgctgacgc
6961 agcaagaggg gctgtaggag cacccatgac caaggtgctt gactggtctg gcacacgcta
7021 ttgggcacca aattctacca aaacaacgag ttactccggg cagttcacat cagcgcctgt
7081 gcacacacca aatttcaaca gcaaacccag gcctcctgcc aaaacccagc cctcttctcc
7141 ttcttctggt agtgtttata gtctttcaac ccaatcaact tcgctccctg gaccctcttc
7201 ttcgggttca tctgtttctt ctgtctcaac acaatcaaca aaattgagtt cagtttcttc
7261 tatgagtaga acagcagatt gggtcaatca acaaaggagc ctcagccctt acatgagcgg
7321 ggcccttaat atttctcatg tgacacctcc atcaagcagg gcttcaagtt cgggaacagt
7381 ctcaactgta cccaaagaag ttttggactc ctggacatct gcattcaaca cacgcagaca
7441 gccgctcttc gcacacctca gagtgagggg ggagtcacgt gtttagtgaa aagaatcaat
7501 tagttttaat taggttaaat tttaa
//