Typing tool
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Typing tool
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Complete norovirus genomes
| PV282513 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5090
ORF2: 5071..6693
ORF3: 6693..7499
LOCUS PV282513 7560 bp RNA linear VRL 28-JUL-2025
DEFINITION Norovirus GII isolate TCH15-123-AP nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PV282513
VERSION PV282513.1
DBLINK BioProject: PRJNA1195114
BioSample: SAMN45209633
Sequence Read Archive: SRR31712887
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7560)
AUTHORS Bhamidipati,S.V., Surathu,A., Ramani,S., Atmar,R.L., Estes,M.K.,
Muzny,D.M., Cregeen,S.J. and Doddapaneni,H.
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2025) Molecular Virology and Microbiology, Baylor
College of Medicine, Alkek Center for Metagenomics and Microbiome
Research, 1 Baylor Plaza, Houston, TX 77030, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: VirMap v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7560
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="TCH15-123-AP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: Houston"
/collection_date="07-Mar-2015"
/note="genotype: GII.4"
gene <1..5090
/gene="ORF1"
CDS <1..5090
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XPY62806.1"
/translation="SNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPP
PKEIPPRPPRPPTPELIKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEEANT
AFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKV
ELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSR
RMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPL
NILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE
LVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSAS
PDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKV
AASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLK
QALKNIAIKKCQIVYNGSTYTLEADGKGSVKVDKVQSTTVQTNNELAGALHHLRCARI
RYYVKCAQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVGDTEEMTNKDGCLKPK
NDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE
IRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVAT
LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKNMDLGTTPGDCGCP
YIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSA
PKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PRPDVLEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGHPHHMRKNDCWNGES
FTGKLADQASKANLMFEERKNMTPVYTGALKDELVKTDKVYGKIKKRLLWGSDLATMI
RCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQ
RDVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGL
KPTRPDKTEGPLVISENLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED
PFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..980
/gene="ORF1"
/product="p48"
mat_peptide 981..2078
/gene="ORF1"
/product="NTPase"
mat_peptide 2079..2615
/gene="ORF1"
/product="p22"
mat_peptide 2616..3014
/gene="ORF1"
/product="VPg"
mat_peptide 3015..3557
/gene="ORF1"
/product="Pro"
mat_peptide 3558..5087
/gene="ORF1"
/product="RdRp"
gene 5071..6693
/gene="ORF2"
CDS 5071..6693
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XPY62807.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLERLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSAEFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSIMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6693..7499
/gene="ORF3"
CDS 6693..7499
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XPY62808.1"
/translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSNPQPLGALPRRANLRDAVPARGSSSKSS
NSSTATTVYSNQTTSTRLGSTAGSGTSVSSLPSAARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 cgtctaacga cgcttccgct gccgctgttg ccaacagcaa caacgacatc gcaaaatctt
61 caagtgacgg tgtgttttct aacatggctg tcacttttaa gcgggccctc ggggcgcggc
121 ctaagcagcc gcccccgaag gagataccac ccagaccccc gcgaccaccc acaccagaat
181 tgatcaaaaa gatccctcct cccccaccca acggggagga tgaactagtg gtctcttaca
241 gcgccaaaga tggcgtttcc ggactgcctg agctcaccac tgtcagacaa ccggaggaag
301 ccaacacggc gttcagtgtc cccccactca accaaaggga gagcagggac gccaaggagc
361 cactaactgg aacaattatt gaaatgtggg atggagaaat ttaccattac ggcctgtacg
421 tggagcgagg tcttatactt ggtgtacaca agccaccagc agccatcagc cttgccaagg
481 tcgagctaac accgctctct ttgttctgga gacctgtata caccccccag tatctcatct
541 ctccagacac tcttaggaga ttacatggag agtcattccc ttacactgca tttgacaaca
601 attgctacgc cttttgttgt tgggtgttag acctaaacga ctcatggcta agcaggagaa
661 tgattcagag aacaacaggt ttcttcaggc cgtaccagga ttggaacagg aaacccctcc
721 ccactatgga tgattccaaa ttaaagaagg tggccaacat attcttgtgc actttatctt
781 cactattcac cagacccatt aaggacataa tagggaagtt gaaacctctt aacatcctta
841 acattctggc tacatgtgac tggaccttcg caggcatagt ggaatcttta atactcttag
901 cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc gcccccttgc
961 taggtgatta tgaactgcaa ggacctgagg accttgcagt ggaactggtc ccaatagtga
1021 tgggggggat aggtttggtg ctaggattta ccaaagagaa aattggaaag atgctatcat
1081 ccgctgcatc cactttaaga gcttgtaaag accttggtgc atacggactg gaaatcttaa
1141 aattggtcat gaagtggttc ttcccaaaga aagaggaagc aaatgaactg gctatggtga
1201 gatccatcga ggatgcagtg ctagacctcg aggcaattga aaacaaccac atgaccaccc
1261 tactcaaaga caaagatagt ttggcaacct atatgagaac ccttgacctt gaggaggaga
1321 aagctaggaa actctcaacc aaatctgctt cacccgatat tgtgggcaca atcaactctc
1381 ttctggcaag aatcgctgct gcacgctccc tagtgcatcg ggcgaaagag gagctctcca
1441 gcaggccgag acctgtcgtt gtgatgatat cgggaagacc agggataggg aagactcacc
1501 ttgccaggga gctggccaag aaggtcgcgg cctccctcac aggggaccag cgtgtgggtc
1561 ttatcccacg caatggtgtc gatcactggg acgcatacaa gggcgaaaga gttgtcctat
1621 gggacgacta tggaatgagc aaccccatcc atgatgccct caggttgcag gagcttgctg
1681 acacttgccc tctcacgcta aattgtgaca gaattgagaa caaagggaaa gtctttgaca
1741 gtgatgccat aattatcacc accaatctgg ccaacccagc accactggat tatgtcaact
1801 ttgaagcgtg ctcgagacgt attgacttcc tcgtgtacgc agaagcccct gaggtggaga
1861 aggcaaagcg cgacttccca ggtcaacctg acatgtggaa gaacgctttc agtcctgact
1921 tctcacacat aaaactgtca ttggctccac agggtggttt tgacaagaac ggcaacaccc
1981 cgcatggaaa aggggtcatg aagaccctca ccactggctc cctcatcgcc cgagcatcag
2041 ggttgctcca tgagaggcta gacgaatatg aactgcaagg cccagccctc accactttca
2101 actttgaccg caacaagata cttgctttta ggcagctcgc tgctgaaaac aagtatgggc
2161 tgatggacac aatgagagtt ggaaaacagc tcaaggatgt caagaccatg tcagacctca
2221 aacaagcact caagaacatc gcgatcaaga agtgccagat agtgtacaat ggtagcacct
2281 atacacttga ggccgatggc aagggtagtg tgaaagttga caaagtgcaa agtaccactg
2341 tgcagaccaa caatgaacta gccggtgccc tacaccacct aaggtgcgct agaatcagat
2401 actatgtcaa gtgcgcccag gaggcactat actccatcat ccaaatcgct ggggctgcat
2461 tcgtcaccac gcgcatcgct aagcgcatga atatacagaa tctctggtcc aagccacagg
2521 tgggagacac agaagagatg accaacaaag atggttgcct aaaacccaaa aatgatgaag
2581 agtttgtcgt ctcgtccgat gacatcaaaa ctgagggcaa gaaagggaag aacaagtccg
2641 gccgtggcaa gaagcacaca gccttttcaa gcaaagggct cagtgatgag gagtacgatg
2701 agtacaagag aatcagagaa gaaaggaatg gtaagtactc catagaagag tatcttcagg
2761 acagagacag gtactacgag gaggtggcca ttgccagggc aaccgaagag gacttctgtg
2821 aagaagaaga ggccaaaatc cggcagagaa ttttcagacc aacaaggaag caacgcaaag
2881 aggagagggc ctctctcggc ttggtcacag gctctgaaat caggaagaga aacccagaag
2941 acttcaaacc caagggaaag ctgtgggctg atgatgacag aagtgttgac tacaatgaga
3001 aactcaactt tgaggcccca ccaagcattt ggtcgcggat agtcaacttt ggttcaggct
3061 ggggcttctg ggtctccccc agtctgttta taacatcaac ccatgtcata ccccaaggtg
3121 caaaagagtt cttcggagtc cctatcaagc agatccagat acacaaatca ggtgaattct
3181 gccggttgag attcccaaag ccaatcagaa ctgatgtgac gggcatgatt ctagaagaag
3241 gtgcgcccga ggggaccgtg gccacgctgc tcatcaagag accaactgga gaactcatgc
3301 ctctggcagc cagaatgggg acccatgcaa ccatgaaaat tcaggggcgc acagttggag
3361 ggcaaatggg tatgctcctg acaggatcca acgccaagaa tatggaccta ggcacaacac
3421 caggcgactg cggctgcccc tacatctaca agagggggaa tgactacgtg gtcataggag
3481 tccatacggc cgctgcccgt ggaggaaaca ctgtcatatg tgccacccag gggagtgagg
3541 gagaagccac acttgaagga ggtgacagta aagggacata ctgtggcgca ccaatcttgg
3601 gcccagggag cgctccgaag ctcagtacca agactaagtt ttggcgatca tccacaacac
3661 cactcccacc tggcacctac gaaccagcct acctcggtgg caaagacccc agagtcaaag
3721 gtggcccttc attgcaacaa gttatgaggg accagctaaa gccattcaca gaacccagag
3781 gcaaaccacc aagaccagat gtgttggaag ctgccaagaa aaccatcatt aatgtccttg
3841 agcaaacaat tgatccaccc caaaaatgga catttgcgca agcttgcgca tcccttgaca
3901 aaaccacctc cagcggccac ccacaccaca tgcggaaaaa cgattgttgg aatggggaat
3961 ccttcacagg aaaattggct gatcaagcct ccaaggccaa cctaatgttt gaagagagaa
4021 agaacatgac tccagtctac acaggtgcac ttaaagatga gttggtaaag accgataaag
4081 tttatggtaa gatcaagaag aggcttctgt ggggttcaga tctggcgacc atgatacggt
4141 gcgcccgagc ttttggaggc cttatggatg agctcaaggc gcactgtgtc acacttcctg
4201 tcagagttgg tatgaacatg aatgaggatg gtcccatcat ctttgagaag cactccagat
4261 atagatatca ctatgatgct gattattctc ggtgggactc aacacaacaa agggatgtgc
4321 tagcagcagc actagaaatc atggttaagt tctctccaga accacacctg gcccaggtag
4381 ttgcagaaga cctcctttcc cctagcgtaa tggatgtagg tgactttcaa atatcaataa
4441 gtgagggtct tccctctggg gtaccttgca cctcccagtg gaattccatc gcccactggc
4501 tcctcactct ttgtgcactc tctgaagtca cggacctgtc ccctgacatc attcaggcca
4561 actctctttt ctccttctat ggtgatgatg agattgtgag cacagacata aagttggacc
4621 cagagaaact gacagcaaaa ctcaaggagt acgggctgaa accaacccgt cccgataaaa
4681 ctgaaggacc ccttgttatc tctgaaaacc tggatggcct gacattcctc cggagaactg
4741 tgacccgtga cccagctggt tggtttggaa aattggaaca aagttcaatt ctcagacaaa
4801 tgtactggac caggggtccc aaccatgaag atccatttga aacaatgata ccacactccc
4861 aaagacccat acaattgatg tccctgctgg gcgaggctgc actccacggc ccagcatttt
4921 atagcaagat tagcaaatta gtcattgcag agttgaagga aggtggcatg gatttttacg
4981 tgcccagaca agagccaatg tttagatgga tgaggttctc agatctgagc acgtgggagg
5041 gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga cgccaaccca
5101 tctgatgggt ccgcagccaa cctcgtccca gaggtcaaca atgaggttat ggctctggag
5161 cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt aattgacccc
5221 tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtatc ccctagaaac
5281 gctccaggtg aaatactatg gagcgcgccc ttgggacctg atctaaatcc ctacctatcc
5341 catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt aattctcgcg
5401 gggaacgcgt tcaccgccgg gaaggtcata tttgcagcag tcccaccaaa ttttccaact
5461 gaaggcttga gccccagcca ggtcactatg ttcccccata tagtagtgga tgttaggcaa
5521 ttagaacctg tgttgattcc cttacccgat gttaggaata atttttatca ttataatcaa
5581 tcaaatgacc ccaccattaa gttgatagca atgttgtata ccccactcag ggctaataat
5641 gctggggatg atgtcttcac agtttcttgc cgagttctca cgagaccatc ccccgatttt
5701 gatttcatat ttctagtgcc acccacagtt gagtcaagaa ctaaaccatt ctctgtccca
5761 gttttaactg ttgaggagat gaccaattca agattcccca ttcctctgga aaggctgttc
5821 acgggtccca gcagtgcctt tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc
5881 gtgctcctag gcaccaccca actgtctcct gtcaacatct gcaccttcag aggagatgtc
5941 acccacatca caggtagtca taattacaca atgaacttgg cttctcaaaa ttggaacaat
6001 tatgacccaa cagaagaaat cccagctccc ctaggaactc cagactttgt ggggaagatt
6061 caaggcatgc tcacccaaac cacaaggaca gatggctcaa cacgcggcca caaagccaca
6121 gtgtacactg ggagcgccga atttgctcca aagctgggta gagttcaatt tgaaactgac
6181 acaaaccatg attttgaagc taaccaaaac acaaaattca ccccagttgg tgtcatccaa
6241 gatggtagca ccacccaccg aaatgaaccc caacagtggg tactcccaag ttactcaggc
6301 agaaatactc ataatgtgca tctggccccc gctgtagccc ccacctttcc gggtgagcaa
6361 cttctcttct tcaggtccat catgcccgga tgcagcgggt accccaacat ggatttggac
6421 tgtctgctcc cccaggaatg ggtgcagtac ttctaccaag aggcagcccc agcacaatct
6481 gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggtcttgtt tgagtgtaag
6541 cttcataaat caggctatat tacagtggct cacactggcc aacatgattt ggttattccc
6601 cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacgct tgcccccatg
6661 ggaaatggaa cggggcgtag acgtgcagta taatggctgg agccttcttt gctggattgg
6721 catctgatgt ccttggctct ggacttggtt cccttatcag tgctggggct ggggccatca
6781 accaaaaagt tgagtttgaa aacaacagaa aattgcaaca agcatccttc caatttagca
6841 gcaatctaca acaggcttcc tttcaacatg acaaagagat gctccaagca caaattgagg
6901 ccaccaagaa gttacaacaa gaaatgatga aagttaagca ggcagtgctc ctagagggtg
6961 gattctctga gacggatgca gcccgcgggg caatcaacgc ccccatgaca aaaaccttgg
7021 actggagcgg gacaaggtac tgggctcccg atgctaggac tacaacatac aatgcaggcc
7081 gcttctccaa ccctcaacca ttgggggcac tgccaagaag agctaatctt agggatgctg
7141 tccctgctcg gggttcctcc agtaaatctt ctaactcttc tactgctact actgtgtatt
7201 caaatcaaac tacttcaacg agacttggtt ctacagctgg ttctggtacc agtgtctcga
7261 gcctcccgtc agctgcaagg actaggagct gggttgagga tcaaagtagg aatttgtcac
7321 ctttcatgag gggggcacac aacatatcgt ttgtcacccc accatctagc agatcctcta
7381 gccaaggcac agtctcaacc gtgcctaaag aggttttgga ctcctggact ggcgctttca
7441 acacgcgcag gcagccactc ttcgctcaca ttcgtaagcg aggggagtca cgggcgtaat
7501 gtgaaaagac aaaattgatt atctttcttt ttctttagtg tcttttaaaa aaaaaaaaaa
//