Typing tool
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Typing tool
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Complete norovirus genomes
| PV282507 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5090
ORF2: 5071..6693
ORF3: 6693..7499
LOCUS PV282507 7559 bp RNA linear VRL 28-JUL-2025
DEFINITION Norovirus GII isolate BCM16-2-AP nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PV282507
VERSION PV282507.1
DBLINK BioProject: PRJNA1195114
BioSample: SAMN45209624
Sequence Read Archive: SRR31712872
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Bhamidipati,S.V., Surathu,A., Ramani,S., Atmar,R.L., Estes,M.K.,
Muzny,D.M., Cregeen,S.J. and Doddapaneni,H.
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2025) Molecular Virology and Microbiology, Baylor
College of Medicine, Alkek Center for Metagenomics and Microbiome
Research, 1 Baylor Plaza, Houston, TX 77030, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: VirMap v. 1
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="BCM16-2-AP"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="USA: Houston"
/collection_date="08-May-2016"
/note="genotype: GII.4"
gene <1..5090
/gene="ORF1"
CDS <1..5090
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XPY62788.1"
/translation="SNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPP
PKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNT
AFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKV
ELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSR
RMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPL
NILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE
LVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSAS
PDIVGTVNSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKI
AASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLK
QALKNIAIKKCQIVYNGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARI
RYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMTNKDGCLKPK
DDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE
IRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVAT
LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSA
PKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGES
FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKIKKRLLWGSDLATMI
RCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQ
RDVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGL
KPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED
PFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..980
/gene="ORF1"
/product="p48"
mat_peptide 981..2078
/gene="ORF1"
/product="NTPase"
mat_peptide 2079..2615
/gene="ORF1"
/product="p22"
mat_peptide 2616..3014
/gene="ORF1"
/product="VPg"
mat_peptide 3015..3557
/gene="ORF1"
/product="Pro"
mat_peptide 3558..5087
/gene="ORF1"
/product="RdRp"
gene 5071..6693
/gene="ORF2"
CDS 5071..6693
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XPY62789.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHTTGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6693..7499
/gene="ORF3"
CDS 6693..7499
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XPY62790.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQSRDLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 cgtctaacga cgcttccgct gccgctgttg ccaacagcaa caacgacatc gcaaaatctt
61 caagtgacgg tgtgttttct aacatggctg tcacttttaa gcgggccctc ggggcgcggc
121 ctaaacagcc gcccccgaag gagataccac ccagaccccc gcgaccaccc acaccggaat
181 tggtcaaaaa gatccctcct cccccaccca acggggagga tgaactagtg gtctcttaca
241 gcgccaaaga tggcgtttcc ggattgcctg agctcaccac tgtcagacaa ccggaagaaa
301 ccaacacggc gttcagtgtc cccccactca accaaaggga gagcagggac gccaaggagc
361 cactaactgg aacaattatt gaaatgtggg atggagaaat ctaccattac ggcctgtacg
421 tggaacgagg tcttatactc ggtgtgcaca agccaccggc agccatcagc cttgccaagg
481 tcgagctaac accgctctct ttgttctgga gacctgtata caccccccag tatctcatct
541 ctccagacac tcttaggaga ttacatggag agtcattccc ctacactgca tttgacaaca
601 attgctacgc cttttgttgt tgggtattag acctaaacga ctcatggcta agcaggagaa
661 tgattcagag aacaacaggt ttcttcaggc cgtaccagga ttggaacagg aaacccctcc
721 ccactatgga tgattccaaa ttaaagaagg tagccaacat attcttgtgc actttgtctt
781 cactattcac cagacccatt aaggacataa tagggaagtt gaaacccctc aacatcctta
841 acattctggc tacatgtgat tggaccttcg caggcatagt ggaatcttta atactcttag
901 cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc gcccccttgc
961 taggtgatta tgaactgcaa ggacctgagg accttgcagt ggagctagtc ccaatagtga
1021 tgggggggat aggtttggtg ctaggattta ccaaagagaa aattggaaag atgctatcat
1081 ccgctgcatc cactttaaga gcttgtaaag accttggtgc atacggactg gaaatcttaa
1141 aattggtcat gaagtggttc ttcccaaaga aagaggaagc aaatgaactg gctatggtga
1201 gatccatcga ggatgcagtg ctagacctcg aggcaattga aaacaaccac atgaccaccc
1261 tactcaaaga caaagacagc ttggcaacct acatgagaac ccttgacctt gaggaggaga
1321 aagccagaaa actctcaacc aaatctgctt cacccgatat tgtgggcaca gtcaactctc
1381 ttctggcaag aatcgctgct gcacgctccc tagtgcatcg ggcgaaagaa gagctctcca
1441 gcaggccgag acctgtcgtt gtgatgatat cgggaagacc agggataggg aaaactcacc
1501 ttgccaggga gctagccaag aagatcgcgg cctccctcac aggggaccag cgtgtgggtc
1561 ttatcccacg caatggtgtc gatcactggg acgcatacaa gggcgaaaga gttgtcctat
1621 gggacgacta tggaatgagc aaccccatcc atgatgccct caggttgcag gagcttgctg
1681 acacttgccc cctcacgcta aattgtgaca gaattgagaa caaagggaaa gtctttgaca
1741 gtgatgctat aattatcacc accaatctgg ccaacccagc accactggat tatgtcaact
1801 ttgaagcgtg ctcgagacgt attgacttcc tcgtgtacgc agaagcccct gaggtggaga
1861 aggcaaagcg cgacttccca ggtcaacctg acatgtggaa gaacgctttc agtcctgact
1921 tctcacacat aaaactgtca ttggctccac agggtggttt tgacaagaac ggcaacaccc
1981 cgcatggaaa aggggtcatg aagaccctca ccactggctc cctcatcgcc cgagcatcag
2041 ggttactcca tgagaggcta gatgaatatg aactgcaagg cccagccctc accactttca
2101 actttgaccg aaacaagata cttgctttta gacagcttgc tgctgaaaac aagtatgggc
2161 tgatggacac aatgagagtt ggaaaacagc tcaaggatgt caagaccatg tcagacctca
2221 aacaagcact caagaacatc gcgatcaaga aatgccagat agtgtacaat ggtagcacct
2281 acacacttga ggccgatggc aagggtagtg tgaaagttga caaagtgcaa agtgccactg
2341 tgcagaccaa caatgaacta gccggtgccc tacaccacct aaggtgcgct agaatcagat
2401 actatgttaa gtgcgtccag gaggcactgt attccatcat ccaaatcgct ggggctgcat
2461 tcgtcaccac gcgcatcgct aagcgcatga atatacagaa tctctggtcc aagccacagg
2521 tggaagacac agaagagatg accaacaaag atggttgcct aaaacccaaa gatgatgaag
2581 agtttgtcgt ctcatccgac gacatcaaaa ctgagggcaa gaaagggaag aacaagtccg
2641 gccgtggcaa gaaacacaca gccttttcaa gcaaagggct cagtgatgag gagtacgatg
2701 agtacaagag aatcagagaa gaaaggaatg gtaagtactc catagaagag taccttcagg
2761 acagagacag gtactacgag gaggtggcca ttgccagggc aaccgaagag gacttctgtg
2821 aagaagaaga ggccaaaatc cggcagagaa tttttagacc aacaaggaaa caacgcaaag
2881 aagagagggc ctctctcggc ttggtcacag gctctgaaat caggaagaga aacccagaag
2941 acttcaaacc caagggaaag ctgtgggctg atgatgacag aagtgttgac tacaatgaga
3001 aactcaactt tgaggcccca ccaagcatct ggtcgcggat agtcaacttt ggttcaggct
3061 ggggcttctg ggtctccccc agtctgttta taacatcaac ccatgtcata ccccaaggtg
3121 caaaagagtt cttcggagtc cctatcaagc aaatccagat acacaaatca ggtgaattct
3181 gccggttgag attcccaaag ccaatcagaa ctgatgtgac gggcatgatt ctagaagaag
3241 gtgcgcccga ggggaccgtg gccacactgc tcatcaagag accaactgga gagctcatgc
3301 ctctggcagc cagaatgggg acccatgcaa ccatgaaaat tcaggggcgc acagttggag
3361 ggcaaatggg tatgctcctg acaggatcca acgccaagag tatggaccta ggcacaacac
3421 caggcgactg cggctgcccc tacatctaca agagggggaa tgactacgtg gtcataggag
3481 tccatacggc cgctgcccgt ggaggaaaca ccgtcatatg tgccacccag gggagtgagg
3541 gagaagccac acttgaagga ggtgacagta aagggacata ctgtggcgca ccaatcttgg
3601 gcccagggag cgctccgaaa ctcagcacca agactaagtt ttggagatca tccacaacac
3661 cactcccacc tggcacctac gaaccagcct acctcggtgg caaagacccc agagtcaaag
3721 gtggcccttc attgcaacaa gttatgaggg accagctaaa gccattcaca gaacccagag
3781 gcaaaccacc aagaccaaac gtgttggaag ctgccaagaa aaccatcatc aatgtccttg
3841 agcaaacaat tgatccaccc caaaaatggt catttgcgca agcttgcgca tcccttgaca
3901 aaaccacctc cagcggccac ccgcaccaca tgcggaaaaa cgattgttgg aatggggagt
3961 ccttcacagg aaaattggct gatcaagcct ccaaggccaa cctaatgttt gaagagggaa
4021 agaacatgac cccagtctac acaggtgcac ttaaagatga gttggtaaag accgataaag
4081 tttatggtaa gatcaagaag aggcttctgt ggggttcaga tctggcgacc atgatacggt
4141 gcgctcgagc ttttggaggc cttatggatg aactcaaggc gcactgtgtc acacttcctg
4201 tcagagttgg tatgaacatg aatgaggatg gccccatcat ctttgagaag cactccagat
4261 atagatatca ctatgatgct gattattccc ggtgggactc aacacaacaa agggatgtgc
4321 tagcagcagc actagaaatc atggttaagt tctcttcaga accacacctg gcccaggtag
4381 ttgcagaaga cctcctttcc cctagcgtaa tggatgtagg tgactttcaa atatcaataa
4441 gtgagggtct tccctctggg gtaccttgta cctcccagtg gaattccatc gcccactggc
4501 tcctcactct ttgtgcactc tctgaagtca cggacctgtc ccctgacatc attcaggcca
4561 actccctttt ctccttctac ggtgatgatg agattgtaag cacagacata aagttggacc
4621 cagagaagct gacagcaaaa ctcaaggagt acgggctgaa accaacccgc cccgacaaaa
4681 ctgaaggacc ccttgttatc tctgaagacc tggatggcct gacattcctc cggagaactg
4741 tgacccgtga tccagctggc tggtttggaa aattggaaca aagttcaatt ctcagacaaa
4801 tgtactggac caggggtccc aaccatgaag atccatttga aacaatgata ccacactccc
4861 aaagacccat acaattgatg tccttgctgg gcgaggctgc actccatggc ccggcatttt
4921 atagcaaaat tagcaagtta gtcattgcag agttgaagga aggtggcatg gatttttacg
4981 tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc acgtgggagg
5041 gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga cgccaaccca
5101 tctgatgggt ccgcagccaa cctcgtccca gaggtcaaca atgaggttat ggctctggag
5161 cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt aattgacccc
5221 tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtgtc ccctagaaac
5281 gctccaggtg aaatactatg gagcgcgccc ttgggccctg atctaaatcc ctacctatcc
5341 catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt aattctcgcg
5401 gggaacgcgt tcaccgccgg gaaggtcata tttgcagcag tcccaccaaa ttttccaact
5461 gaaggcttga gccccagcca ggtcactatg ttcccccata tagtagtaga tgttaggcaa
5521 ctagaacctg tgttgattcc cttacccgat gttaggaata atttctatca ttataatcag
5581 tcaaatgacc ccaccattaa gttgatagca atgttgtaca caccacttag ggctaataat
5641 gctggggatg atgtcttcac agtttcttgc cgagttctca cgagaccatc ccccgatttt
5701 gatttcatat ttctagtgcc acccacagtt gagtcaagaa ctaaaccatt ctctgtccca
5761 gttttaactg ttgaggagat gaccaattca agattcccca ttcctttgga aaagttgttc
5821 acgggtccca gcagtgcctt tgttgtccaa ccacaaaacg gcaggtgcac gactgatggc
5881 gtgctcctag gcaccaccca actgtctcct gtcaacatct gcaccttcag aggagatgtc
5941 acccatacca caggtagtcg taactacaca atgaatttgg cttctcaaaa ttggaacaat
6001 tatgacccaa cagaagaaat cccagcccct ctaggaactc cagactttgt ggggaagatt
6061 caaggcgtgc tcacccaaac cacaaggaca gatggctcaa cacgcggcca caaagccaca
6121 gtgtacactg ggagcgccga ctttgctcca aaactgggta gagttcaatt tgaaactgac
6181 acagaccatg attttgaagc taaccaaaac acaaagttca ccccagtcgg tgtcatccaa
6241 gatggtagca ccacccaccg aaatgaaccc caacagtggg tgctcccaag ttactcaggc
6301 agaaatactc ctaatgtgca tctggccccc gctgtagccc ccacttttcc gggtgagcaa
6361 cttctcttct tcagatccac catgcccgga tgcagcggtt accccaacat ggatttggac
6421 tgtctgctcc cccaggaatg ggtgcagtac ttctaccaag aggcagcccc agcacaatct
6481 gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt tgagtgtaag
6541 cttcataaat caggctatgt tacagtggct cacactggcc aacatgattt ggttattccc
6601 cccaatggtt attttagatt tgattcctgg gtcaaccagt tctacacgct tgcccccatg
6661 ggaaatggaa cggggcgtag acgtgcagta taatggctgg agctttcttt gctggattgg
6721 catctgatgt ccttggctct ggacttggtt cccttatcaa tgctggggct ggggccatca
6781 accaaaaagt tgagtttgaa aataacagaa aattgcaaca agcatccttc caatttagca
6841 gcaatctaca acaggcttcc tttcaacatg acaaagagat gctccaagca caaattgagg
6901 ccaccaaaaa gctacaacag gaaatgatga aagttaagca ggcaatgctc ctagaaggtg
6961 ggttctctga gacagatgca gcccgcgggg caatcaacgc ccccatgaca aaagctttgg
7021 actggagcgg gacaaggtac tgggctcccg atgctaggac tacaacatac aatgcaggcc
7081 gcttttccac ccctcaacca tcgggggcac tgccaggaag agctaatttt agggatgctg
7141 tccctgctcg gggttcctcc agtaaatctt ctaactcttc tactgctact tctgtgtact
7201 caaatcaaac tacttcaacg agacttggtt ctacagctgg ttctggtacc agtgtctcga
7261 gcctcccgtc aactgcaagg actaggagct gggttgagga tcaaagtagg gatttgtcac
7321 ctttcatgag gggggcccat aacatatcgt ttgtcacccc accatctagc agatcctcta
7381 gccaaggcac agtctcaacc gtgcctaaag aggttttgga ctcctggact ggcgctttca
7441 acacgcgcag gcagccactc ttcgctcaca ttcgtaagcg aggggagtca cgggcgtaat
7501 gtgaaaagac aaaattgatt atctttcttt tctttttctt tagtgtcttt taaaaaaaa
//