Typing tool
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Typing tool
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Complete norovirus genomes
| PV276961 | GII.17 | |
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| GII.P17 |
ORF1: 1..5091
ORF2: 5072..6688
ORF3: 6688..7451
LOCUS PV276961 7451 bp RNA linear VRL 01-JAN-2026
DEFINITION Norovirus GII isolate 581240 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION PV276961
VERSION PV276961.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7451)
AUTHORS Dinu,S., Popa,L.I., Albu,O.C., Rusu,L.C. and Oprea,M.
TITLE Norovirus GII.P17-GII.17 detected in children
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7451)
AUTHORS Dinu,S., Popa,L.I., Albu,O.C., Rusu,L.C. and Oprea,M.
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2025) Molecular Epidemiology for Communicable
Diseases Laboratory, Cantacuzino National Military Medical
Institute for Research and Development, 103 Splaiul Independentei,
Bucharest 050096, Romania
COMMENT ##Assembly-Data-START##
Assembly Method :: Bowtie2 v. 2.3.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7451
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="581240"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Romania"
/collection_date="Sep-2024"
/note="genotype: GII.P17-GII.17"
gene <1..5091
/gene="ORF1"
CDS <1..5091
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="XPU94646.1"
/translation="DASVAVAGKNNNNDNVKSSSDSLFSNMTVTFKKALGARSKQPPP
GETKQTLRPPRPPTPELVKKIPPPPPNGEDEPKVTYKVGEGVSGLPDLTTVAQPDAQN
TAYSVPPLSQREVGEAREPLPGSILEMWDGEIYHYGLYVDRGHVLGVHKPPAAISLAK
IELTPLSLYWRVVYTPQYLIAPETLKNLNGETFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMVQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKP
LNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAIIAPLLGDYEMQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDALATYIRTLDLEEEKARKLSSKSA
SPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKK
VASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKR
DFPGQPDMWKDHYRPDFSHIKLQLAPQGGFDKSGNTPHGKGVVKSLTIGSLIARASGL
LHERMDEFELQGPNLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDEL
KQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALHHLRSAR
IRYYVKCFQEAIYSILQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKGGCPKP
RDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLF
ITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVV
SILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGN
APKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGE
SFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM
IRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYG
LKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHE
DPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..981
/gene="ORF1"
/product="p48"
mat_peptide 982..2079
/gene="ORF1"
/product="NTPase"
mat_peptide 2080..2616
/gene="ORF1"
/product="p22"
mat_peptide 2617..3015
/gene="ORF1"
/product="VPg"
mat_peptide 3016..3558
/gene="ORF1"
/product="Pro"
mat_peptide 3559..5088
/gene="ORF1"
/product="RdRp"
gene 5072..6688
/gene="ORF2"
CDS 5072..6688
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XPU94647.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
ASQRNVGNDAPGSTRSHEAVISTYSPRFVPKLGSVNFKSNDDDFQLQPTRFTPVGIND
DGNQPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLFFRSSVPCSGGYNQGIIDCL
IPQEWIQHFYQESAPSQSEVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6688..>7451
/gene="ORF3"
CDS 6688..>7451
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XPU94648.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPSVPQSKPAKPKSLGSSSSSSSVYSMSTQLT
SLRSGPSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRG"
ORIGIN
1 gacgcttccg ttgccgttgc tggcaaaaac aacaacaacg acaatgtaaa atcttcaagt
61 gacagcttgt tttctaacat gactgttact tttaagaaag ccctcggggc gcggtctaag
121 cagccgcccc cgggagaaac aaaacaaaca ctaagaccac caaggccgcc aacaccggaa
181 ttggtgaaga agataccccc accccccccc aatggcgagg atgaaccaaa ggtaacgtat
241 aaggtgggag aaggtgtgtc tgggctgccc gacttaacaa ccgtggcaca acctgacgca
301 cagaacacag cctatagtgt ccccccactt agccagagag aggtcggcga agctagagaa
361 ccgttgcctg gctccattct ggaaatgtgg gatggtgaga tctaccacta tgggctgtat
421 gttgatcggg ggcatgtgct gggagtgcac aaaccacctg ctgcaataag ccttgccaaa
481 attgagttaa caccgctgtc tctctactgg agagtggtct acactcccca gtacttgata
541 gctccagaga ccctcaagaa tttaaatgga gagactttcc catacacggc ctttgacaac
601 aactgttatg ccttctgttg ttgggttcta gacctcaacg actcctggct tagcagaaga
661 atggtccaaa gaacaaccgg attcttcaga ccgtatcagg actggaacag aaaaccctta
721 ccaaccatgg atgaaccaaa aatcaagaag gccgcgaatg ctgttctgtg tgctctctcc
781 tcactcttca ctaggcccat caaagatgtt attggaaagc ttaaaccact aaacattatg
841 aacatactgg caacttgtga ttggactttt gcgggcatag tggaatccat gatccttctt
901 gctgaactct ttggggtgtt ctggacgccc ccagatgtgt ctgcaataat tgctccctta
961 ctcggtgact acgagatgca aggccccgaa gacctggccg tggaacttgt gcccgtggta
1021 atgggaggaa taggtttggt gttaggattc accaaggaaa agatcggcaa gatgctttca
1081 tcagctgcaa ccacactcag ggcctgtaag gatctaggat cttatgggtt ggagatactc
1141 aaactggtca tgaagtggtt cttccccaag aaggaggagg ccaacgagtt agccatggtg
1201 agggccattg aggatgcagt actggatttg gaggcaatag aaaacaacca catgaccact
1261 ctccttaagg acaaagacgc cctggccaca tacataagga ctcttgactt ggaagaagaa
1321 aaagcaagga aactatcttc caaatcggcg tcacctgaca tcgtgggcac agtaaacgca
1381 ttattggcaa gaatagcagc cgccaggtca ctggtccaca aggctaagga ggagctctcg
1441 agcagacaga gacctgttgt tgtaatgata tcaggtaggc caggtatagg aaagacccat
1501 ctggccagag agctagccaa gaaggttgcg tcaacactgt caggcgacca aaggattgga
1561 ctgataccca gaaatggcgt cgaccattgg gacgcctaca aaggagagcg ggtggttctg
1621 tgggatgact atggcatgag caaccctata caggacgcac tgaggctcca agaattggct
1681 gacacctgtc ctctgaccct aaattgtgac agaattgaaa acaaaggaaa agtgttcgac
1741 agtgacgcca taatcataac gaccaacctt gcaaacccag caccattgga ttatgtcaac
1801 tttgaggctt gttccagacg catagacttc ttggtgtatg cagacgcacc tgacatcgag
1861 aaggctaagc gtgacttccc tggccaacca gatatgtgga aagaccatta cagaccagac
1921 ttctcacaca ttaaacttca gctcgcacca cagggaggct ttgataagag tggcaacacc
1981 ccacatggca aaggtgtggt taagtctctg acgattggtt ctctgatcgc cagggcttct
2041 ggcttgctcc atgagagaat ggatgaattc gagctccaag gccccaactt accaaccttc
2101 aattttgacc gtaacaaagt cgccgccttc agacaattag cagctgaaaa caaatatggt
2161 cttatggaca cactgagggt cggcaaccaa ctgaaaagtg tcaaaaccct ggatgagctg
2221 aagcaggcta taaagaacat caccatcaag aagtgccaga tagtgtacaa tggatgcacc
2281 tacactatgg aatctgatgg gaggaacaag gttgtggttg aaaaggttca aaatgcaaca
2341 gtccaaacca acaatgaact tgcaggagca ctccaccacc tgagatctgc aagaataagg
2401 tattatgtca aatgtttcca agaagctatt tactctatac tccaaattgc tggtgcagcc
2461 ttcgtcacca cacgcatcgt gaggcgcatg aacatctcaa acctctggtc gaagccaccc
2521 gtcgaagagg gtgatgagcc tgaagacaaa ggggggtgcc ccaagcccag ggatgaagat
2581 gacctcacta ttgactccaa agacattaaa gcagaaggta agaagggcaa gaacaaatct
2641 ggccggggca agaaacacac agctttctca tccaagggcc tcagtgatga agagtacgat
2701 gagtacaaga gaatcaggga ggagagaaat ggcaagtact caatagaaga atacctccag
2761 gatagggata gatactatga agagcttgcc attgctaagg ccactgagga agacttctgt
2821 gaagaggagg aaatcaaaat tcgccagaga atcttccggc ccaccaggaa gcagcggaaa
2881 gaggaaagag ccacgcttgg gctcgtcaca ggatcggaaa tcagaaagag gaacccagat
2941 gattttaagc caaaaggaaa attgtgggct gatgacaaca ggagtgtgga ctacaatgag
3001 aggatagatt ttgaggctcc cccaagtgtt tggtctagga tagtcaactt tggtacagga
3061 tggggattct gggtctcccc aagtctcttt ataacttcaa cacatgtcat accaaaagga
3121 atcactgagg cctttggagt tcccattaac caaattcaaa ttcacaaatc tggagagttt
3181 tgccgcttgc ggtttccaaa accaatcagg ccagacgtga gtggaatgat cttggaagag
3241 ggtgcccctg aaggcactgt tgtttccatt ctcatcaaga ggacgacagg ggaactgatg
3301 cctctcgcag tcagaatggg aactcatgcc acaatgaaaa tccaaggtag aacggtgggc
3361 ggtcaaatgg gcatgcttct cactggctca aacgccaaaa gcatggacct aggcacaaca
3421 ccaggtgact gtgggtgccc atacatatac aaaaggggca atgacttcgt ggtcattggg
3481 gtgcacactg cagcagcccg tggaggtaac acggtcatat gtgccacaca ggggagtgaa
3541 ggcgaagcca ccctcgaagg aggtgacaac aagggcacct attgtggagc ccccatcttg
3601 ggtcctggca acgcaccaaa attgagcaca aaaacaaaat tctggagatc ttctaacgcg
3661 ccgctcccgc caggcaccta tgaaccagca taccttggtg gaaaagaccc gcgtgtgaag
3721 ggaggcccat ctctacaaca ggttatgaga gaccaactca aaccttttac agagcccaga
3781 gggaagccac caaaaccaag tgtcctagaa tcagcaaaga agaccatcat taatgttctg
3841 gaacaaacca ttgacccccc tgaaaagtgg tcatatgccc aagcttgtgc atccctcgac
3901 aagacaacct ccagtggata cccgcatcac gtccggaaga atgactactg gagtggtgaa
3961 tccttcacgg ggaaacttgc agatcaggcc tcaaaagcaa atctcatgta tgaggaaggt
4021 aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa aactgacaaa
4081 atttatggca agatcaagaa aagactcctg tggggctctg acctatccac catgattcga
4141 tgcgccaggg catttggtgg cctcatggac gagctcaaag caaattgtat cacactccct
4201 atcagagttg gtatgaacat gaatgaagat ggtcccataa tatttgaaaa gcactccagg
4261 tataggtacc actatgatgc tgattattcc cgctgggatt ccacacaaca gcgggcagtg
4321 ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagtt ggcacaaata
4381 gtggcagagg acctgctatc accaagtgtg gttgatgtgg gcgatttcaa aattactatt
4441 aatgaaggcc taccatctgg cgtgccttgc acttcacaat ggaattctat tgcccactgg
4501 ttactcaccc tatgtgccct gtctgaagtg acaggactag gccctgacat catacaagcc
4561 aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat aaaattagac
4621 ccagagaaat tgactgcaaa actcaaagaa tatggtctta aacccactcg gcctgacaag
4681 actgaggggc cactggtaat tagtgaggac ctgaatgggt tgactttcct ccgccgaaca
4741 gtcacccgcg atccagcggg ttggtttgga aagttggacc aaaactccat cctcagacag
4801 ctgtactgga caaggggacc caaccatgaa gaccccagtg agactatgat accacacgca
4861 cagagacctg tgcagctcat ggcattgcta ggagaatcct ccctacatgg accctcattt
4921 tacagcaagg ttagcaagct ggttatatct gaacttaaag agggaggaat ggatttttat
4981 gtgcccagac aagagtcaat gttcaggtgg atgaggttct cagatctaag cacatgggag
5041 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc
5101 atctaatgat ggtgctgctg gtctcgtacc agagggcaat aacgagaccc ttcccctaga
5161 accagttgcg ggcgcagcca tagccgcacc cgtcactggc caaaataata taattgaccc
5221 ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt cacccagaaa
5281 ctctcctgga gaaattttac taaacctaga gttgggccct gatctgaacc cttatttggc
5341 tcatttgtca aggatgtata atggatatgc tggtggagtt gaagtccagg ttctcctggc
5401 agggaacgcg ttcactgccg ggaagatcct cttcgccgct gtcccgccaa attttccggt
5461 ggagttctta agcccagccc agattacaat gctcccacat ataatagtag atgttaggac
5521 tcttgaacca attatgatcc cattacctga tgttaggaat acattcttcc actataataa
5581 tcagcccaac agtcgcatga gattagtggc tatgctctac acccccctta gatctaatgg
5641 ctcaggtgat gatgttttca ctgtttcttg tagggttttg actaggccta ctcctgattt
5701 tgagttcact tatctagtgc caccctctgt tgaatctaag actaaaccct tttctttacc
5761 cattctaacc ctttctgagc tcacaaattc gaggttcccg gtccccatcg attcgctttt
5821 caccgcccaa aataatgtgt tgcaggtgca gtgtcaaaat ggcaggtgca cacttgacgg
5881 tgagctacaa ggcacaaccc agttgctccc atctggcatc tgtgcgttca ggggacgggt
5941 gacagcagaa actgacaatc ctgacaagtg gcacatgcaa ctgcaaaacc ttaatggcac
6001 aacatatgac ccaactgatg atgtgccagc cccactgggt acacctgact tcaagggcgt
6061 cgtgtttggg atggcaagcc aaagaaatgt gggtaacgac gcgcccggct caaccaggtc
6121 ccatgaggcg gtgatttcaa cctacagccc cagatttgtt cctaaattag gctctgtcaa
6181 tttcaaaagc aatgacgatg atttccaatt gcagccaaca agattcacac cagtgggcat
6241 taatgatgat ggcaaccaac cattcagaca atgggaacta ccagattatt caggggtgct
6301 taccttgaat atgaaccttg ccccccctgt tgctccaaat ttccctggcg aacaattgct
6361 attcttcaga tcttctgtgc catgttcagg aggttacaac caaggtatta tagattgcct
6421 tatcccccaa gaatggatcc aacacttcta ccaggaatca gcaccttctc agtcagaagt
6481 ggccctaatc aggtacgtca accccgacac gggtcgtaca ctgtttgagg caaaattgca
6541 taggtcaggc tatatcactg tggctcattc tggagactat cctcttgttg ttccggctaa
6601 tggatacttt agatttgact cttgggtaaa tcagttttac tcactcgccc caatgggaac
6661 tgggaatggg cgaaggaggg ctcagtaatg gctggagctt tcattgcagg attggcgggt
6721 gacatgctca cgtcatccgt gggctccctg gtgaacgcag gggcaaacgc catcaaccaa
6781 aagatagact ttgaaaacaa caaacaactc cagtctgctt cctttcaaca tgataaagag
6841 atgcttcaag cgcaggtgaa cgcaaccaag cagctgcaat ctgagatgat agccctaaaa
6901 cagggggttt tggccgcagg cggcttttcc cccactgatg cagcgagggg ggccatcggt
6961 gcacccatga caaaggtgct tgactggtct ggcactcgat actgggctcc caattccaca
7021 aagacaactg gttattcggg gcaattcacc tcttcacctg tgcacatgcc cagcccgagt
7081 gtcccacaat caaaacccgc aaagcccaag tctctaggtt cttcttcttc ttctagtagt
7141 gtttacagta tgtctaccca attaacttct ctaagatctg gcccttctag taatgcttct
7201 tctgcttcta caaaattgac aaatttgagc tccggctctt ctcaaaacag aacagcagag
7261 tgggtgaacc aacagagaag tctcagccct ttcatgagtg gcgcactcaa tatctcgcat
7321 gtcacgccac cttcaagtag ggcctccagt tctgggacgg tctcaaccgt gcccaaggaa
7381 gttttggact cctggacatc tgcattcaac acacgcagac agccgctctt cgcacacctc
7441 agagtgaggg g
//