Typing tool
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Typing tool
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Complete norovirus genomes
| PQ590551 | GII.17 | |
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| GII.P17 |
ORF1: 1..5091
ORF2: 5072..6694
ORF3: 6694..7473
LOCUS PQ590551 7534 bp RNA linear VRL 16-JUN-2025
DEFINITION Norovirus GII isolate GII/Hu/TH/2023/GII.17[P17]/B10503
nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION PQ590551
VERSION PQ590551.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7534)
AUTHORS Chuchaona,W., Izquierdo-Lara,R.W., Schapendonk,C.M.E.,
Khongwichit,S., Koopmans,M.P.G., de Graaf,M. and Poovorawan,Y.
TITLE The First Case Report of a Rare Enterovirus A76 Strain Co-infection
with Norovirus GI.6[P11] in an Acute Gastroenteritis Patient from
Thailand
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7534)
AUTHORS Chuchaona,W., Izquierdo-Lara,R.W., Schapendonk,C.M.E.,
Khongwichit,S., Koopmans,M.P.G., de Graaf,M. and Poovorawan,Y.
TITLE Direct Submission
JOURNAL Submitted (14-NOV-2024) Department of Pediatrics, Center of
Excellence in Clinical Virology, Chulalongkorn, Phayathai, Bangkok,
Bangkok 10330, Thailand
COMMENT ##Assembly-Data-START##
Assembly Method :: metaSPAdes v. 3.15.5
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7534
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/TH/2023/GII.17[P17]/B10503"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Thailand"
/collection_date="15-Oct-2023"
/note="genotype: GII.17[P17]"
gene <1..5091
/gene="ORF1"
CDS <1..5091
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="XKI05663.1"
/translation="DASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPP
GETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGVVYKVGEGVSGLPDLTTVAQPDAQN
TAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAK
IEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKE
EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKK
VASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKR
DFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGL
LHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDEL
KQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSAR
IRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKP
RDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGT
EIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLF
ITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVV
SILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGPGN
APKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGE
SFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM
IRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYG
LKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHE
DPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..981
/gene="ORF1"
/product="p48"
mat_peptide 982..2079
/gene="ORF1"
/product="NTPase"
mat_peptide 2080..2616
/gene="ORF1"
/product="p22"
mat_peptide 2617..3015
/gene="ORF1"
/product="VPg"
mat_peptide 3016..3558
/gene="ORF1"
/product="Pro"
mat_peptide 3559..5088
/gene="ORF1"
/product="RdRp"
gene 5072..6694
/gene="ORF2"
CDS 5072..6694
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XKI05664.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTAYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGSDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6694..7473
/gene="ORF3"
CDS 6694..7473
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XKI05665.1"
/translation="MAGAFIAGLAGDLLTSSVGSLVNAGANAINQKVDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSPVPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gacgcttccg ctgccgttgc tggcaaaaac aacaacaacg acaaggaaaa atcttcaagt
61 gacagcttgt ttgctaatat gtctgtcact tttaagaaag ccctcggggc gcggtctaaa
121 caaccgcccc cgggagaaac aaaacaaata caaaaaccac caaggccacc gacaccggaa
181 ttggtgaaga gaatacctcc acccccaccc aatggcgagg atgaaccagg ggtagtgtat
241 aaggtgggag agggtgtgtc tgggctgccc gacctaacaa ctgtggcaca acctgacgca
301 caaaacacag cttacagtgt tcccccactt agccagagag aagtcggcga agctaaagaa
361 ccgctgcctg gctccattct ggaaatgtgg gatggtgaga tctaccacta tgggctgtat
421 gttgagcggg ggcatgtgct cggagtacac aaaccacctg ctgcaataag ccttgccaaa
481 attgaaataa caccgctgtc tctctactgg agagtggtct acactcccca gtatttgata
541 gatccaggaa ctcttaagaa cttgagtgga gagactttcc catacacggc ctttgacaat
601 aactgctatg ccttctgttg ctgggtccta gacctcaacg actcctggct tagcaggagg
661 atgattcaaa gaacaactgg atttttcaaa ccttatcagg attggaacag aaaaccctta
721 ccaaccatgg atgaaccgaa aatcaagaag gccgcgaatg ctgtcctatg cgctctctcc
781 tcactcttca ctagacccat taaggacatc attgggaagc ttagaccact gaatattctt
841 aatatactgg caacctgcga ttggactttt gcaggcatag tggaatcctt gatccttctt
901 gctgaactct ttggggtgtt ctggacaccc ccagatgtgt ctgcgatgat tgctccctta
961 ctcggcgact acgagatgca aggccccgaa gacctagctg tggaacttgt acccgtggtg
1021 atgggaggaa taggtttggt gttaggattc accaaagaaa agatcggcaa gatgctttca
1081 tcagctgcga ccacacttag ggcctgcaag gatttaggat cttatggact ggagatactc
1141 aaattggtca tgaagtggtt cttccccaaa aaggaggagg ctaacgaact agccatggtg
1201 agggccattg aggatgcagt cctggatttg gaggcaatag agaacaatca catgaccacc
1261 cttctcaagg ataaagacag cctggccaca tacatgagga ctcttgactt ggaagaagag
1321 aaagcaagga aactgtcgac caaatcggcg tcacctgaca tcgtgggtac aataaacgca
1381 ctgttggcta ggatagcagc cgccagatca ctggtccaca aggctaagga ggagctctcg
1441 agcagacaga gacctgttgt tgtaatgata tcaggtagac caggtatagg aaagacccat
1501 ctggccagag agctagccaa gaaagttgcg tcaacactgt caggcgacca aagaatcgga
1561 ctggtaccta ggaatggtgt cgaccattgg gacgcctaca agggagaaag ggtggtcctg
1621 tgggatgatt atggtatgag caaccctata caggacgcac tgaggctcca agaattggct
1681 gacacctgtc ctctgaccct aaattgtgat aggattgaaa acaaaggaaa agtgttcgac
1741 agtgacgcca taattataac aaccaacctt gcaaacccag caccactaga ctatgtcaac
1801 tttgaggctt gctctagacg catagacttc ttggtgtatg cagacgcacc tgacattgag
1861 aaggctaagc gtgacttccc tggccaacca gatatgtgga aagaccattt cagaccagac
1921 ttctcacaca ttaaacttca gctggcacca cagggaggtt ttgacaaaaa tggcaacacc
1981 ccacatggca aaggtgtggt aaagtccctg acgattggtt ccctgatcgc cagggcctcc
2041 ggcttgctcc acgagagaat ggatgagttc gagctccaag gctctgacct gccaaccttc
2101 aattttgacc gcaataaagt cgctgccttc agacaattgg cagctgaaaa caaatatggt
2161 cttatggaca cattgagggt cggcaaccaa ttgaaaagtg ttaagaccct ggatgagctg
2221 aagcaggcca taaagaacat cagtatcaaa aagtgtcaaa tagtgtataa tggatgcacc
2281 tataccatgg aatctgatgg gaggggcaag gttgtggttg aaaaggtaca aaacgcaaca
2341 gttcaaacca acaatgaact cgtaggggca ctccaccacc tgaggtctgc aaggataaga
2401 tactatgtta aatgtttcca agaagccatt tactctctac tccaaattgc tggcgcagcc
2461 tttgtcacct cacgcatcgt gaggcgcatg aacatatcaa acctctggtc gaagccaccc
2521 attgaggagg gtgatgagcc tgaggataga ggagggtgcc ccaagcccag ggatgaagat
2581 gatctcacta ttgactccag agacattaaa gtggaaggga agaagggcaa gaacaagtct
2641 ggccggggca agaaacacac agccttctct tccaagggcc tcagtgatga agagtacgat
2701 gagtacaaga gaattagaga ggagaggaat ggcaaatact caatagagga atacctccaa
2761 gacagggaca ggtactatga agagcttgcc attgctaagg ccactgagga agacttctgt
2821 gaagaggagg agattaaaat ccgccagaga atcttccgac ccaccaggaa gcaacggaaa
2881 gaggaaaggg ccacgctcgg gcttgtcaca ggaacggaaa tcagaaagag gaatccagat
2941 gattttaaac caaaaggaaa attgtgggct gatgacaaca ggagcgtgga ttacaatgag
3001 aggatagatt ttgaggctcc cccgagtgtt tggtctagga tagtcaactt tggcacaggc
3061 tggggattct gggtctctcc aagtctcttt ataacttcaa cacacgtcat accaaaagga
3121 atcactgagg cctttggagt gcccataaac caaatccaaa tccacaaatc tggagaattt
3181 tgccgcttgc ggtttccaaa gccaattaga ccagacgtga gtgggatgat cttggaagag
3241 ggcgcccctg aaggcactgt tgtgtctatt ctcatcaaaa ggacaacagg ggagctgatg
3301 cctcttgcag tcagaatggg gactcatgcc acaatgaaaa tccaaggtag aacggtgggt
3361 ggtcagatgg gtatgcttct cactggctca aatgctaaag gcatggatct aggcacaacg
3421 ccaggtgact gcggatgtcc atacatatac aaaaggggca atgaccttgt ggtcattggg
3481 gtgcacactg cagcagctcg tggaggcaac acggtcatat gtgccacaca gggaagtgag
3541 ggtgaagcca ctcttgaagg agatgacaac aagggtacct attgtggagc ccccattttg
3601 ggacctggca atgcaccaaa attgagcaca aagacaaaat tctggagatc ctctaacgca
3661 ccgcttcccc caggtactta tgaaccagca taccttggtg ggagggaccc gcgcgtaaag
3721 ggaggcccat ctctgcaaca agttatgaga gatcaactca aaccttttac agagcccaga
3781 gggaagccac caaacccaaa tgtcttagag tcagcaaaga agactatcat caatgttctg
3841 gaacagacca ttgaccctcc tcaaaagtgg tcatatgccc aagcttgtgc atccctcgac
3901 aagacaacct ccagtggata cccacaccac gttcggaaga atgactactg gagtggtgaa
3961 tcattcacag gaaaacttgc agatcaggct tcaaaagcaa atctcatgta tgaggagggc
4021 aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa aactgacaaa
4081 atttatggca agatcaagaa aagactccta tggggctctg acctctccac aatgattcga
4141 tgcgccagag catttggtgg tctcatggat gaactcaaag caaattgtat cacactccct
4201 atcagagttg gtatgaatat gaatgaagat ggtcccataa tatttgagaa acactccagg
4261 tacaggtacc actatgatgc tgattactcc cgctgggact ccacacaaca gcgggcagtg
4321 ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagct ggcacaaata
4381 gtggcagagg acctgctgtc accaagtgtg gttgatgtgg gcgatttcaa aatcgctatc
4441 aatgaaggcc taccatctgg cgtgccttgc acctcacaat ggaattctat tgcccactgg
4501 ttacttacct tgtgtgccct ttctgaagtg acgggattag gtcctgacat cattcaagct
4561 aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat aaaattggac
4621 ccagagaaat taaccgcaaa gctcaaagaa tatggcctta aacccactcg gcccgacaaa
4681 actgaagggc cgttggtgat tagtgaggac ctgaatgggt taactttcct tcgccggaca
4741 gtcacccgtg atccagcagg ttggtttgga aagctggacc aaaactccat cctcaggcag
4801 ttgtactgga caagaggacc caaccatgaa gaccccagtg agaccatgat accacacgca
4861 caaagacctg tgcagctcat ggcacttcta ggagaatcct ctctacatgg accctcattt
4921 tacagcaagg ttagcaagtt agtaatatct gaacttaaag agggaggaat ggatttttat
4981 gtgcccagac aagaatcaat gttcagatgg atgaggttct cagatctaag cacatgggag
5041 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc
5101 atctaatgat ggtgctgctg gtctcgtacc agagggcaac aacgagaccc ttcccctaga
5161 accagttgcg ggcgcagcta tagccgcacc cgtcactggc caaaataata taattgaccc
5221 ctggattaga acaaattttg tgcaagcacc aaatggagag tttacagtgt cacccagaaa
5281 ctctcctgga gaaattttat taaatttaga gttgggccct gatttgaacc cttatttggc
5341 tcatttgtca aggatgtaca atgggtatgc tggtggagtg gaagttcagg ttctcctggc
5401 agggaacgcg ttcactgccg gaaagatcct cttcgccgcc gtcccgccaa atttcccagt
5461 ggaattctta agcccagccc agatcacaat gctcccacac ttaatagtag atgttaggac
5521 tcttgaacca atcatgatcc cactccctga tgttaggaat acattcttcc attataataa
5581 tcagcctaac agccgcatga gactagtggc tatgctctat accccactca gatctaatgg
5641 ttcaggtgat gatgtcttta ctgtctcttg tagggttttg actaggccta ctcctgattt
5701 tgagtttact tatttagtgc caccttctgt tgaatctaaa accaagcctt tttccctacc
5761 tattttaaca ctttctgagc tcacaaattc gaggtttcca gtccccatcg attcgctttt
5821 taccgcccag aataatgtgt tgcaggtgca gtgtcaaaat ggcaggtgca cacttgatgg
5881 tgagctacaa ggcacaaccc agttgctccc aaccggcatc tgtgcattca gaggacgggt
5941 gacagcacaa atcaaccaac gtgacaggtg gcacatgcaa ctgcaaaacc tcaatggcac
6001 agcatatgac ccaactgatg atgtgccagc cccgctgggt acacctgact tcaagggtgt
6061 cgtgtttgga atggtaagcc aaagaaatgt gggtagtgat gcgcctggct caaccagagc
6121 ccaacaggcg tgggtttcaa cctatagccc ccaatttgtc cccaaattag gttctgtcaa
6181 tcttagaatt agtaataatg atgacttcca attccagcca acaaaattca caccagtggg
6241 catcaatgat gatgatgatg atcacccgtt cagacagtgg gagctaccaa attattcagg
6301 ggagcttacc ctgaacatga atcttgcccc cccagttgct ccaaatttcc ctggtgaaca
6361 attgttattc ttcagatctt tcgtgccatg ctcaggaggt tacaaccaag gtattataga
6421 ctgtcttatt ccccaagaat ggatccaaca tttctatcag gaatcagcac cctcccagtc
6481 agatgtggcc ctaatcaggt atgtcaaccc cgatacggga cgtacactgt ttgaagcaaa
6541 attgcacaga tctggttaca ttactgtggc tcactctgga gattatcctc ttgttgttcc
6601 ggctaatgga cactttagat ttgattcttg ggtaaatcag ttttactcac tcgccccaat
6661 gggaactggg aatgggcgaa ggagggctca gtaatggctg gggctttcat tgcaggattg
6721 gcaggcgacc tgctcacgtc atctgtgggc tcccttgtga acgcaggggc aaacgccatc
6781 aaccaaaagg tagactttga aaacaataaa caactccagt ctgcttcctt tcagcatgat
6841 aaagagatgc tccaagcgca ggtgagggca accaagcagc tgcaatctga aatgatagcc
6901 ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc aaggggatcc
6961 attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg ggcgcctaat
7021 tccacaaaga caactggcta ttcgggacaa ttcacctctt cacctgtgca tatgtctagc
7081 ccaaatgctc cacaatcaaa acctgcaaag cctaggtctc cagttccttc ctcctcttct
7141 agtagtgttt atagtatgta tactcaatct actcatttga catctggctc ttctagtaat
7201 gcttcttctg cctctacaaa gttgacaaat ttaagctctg gctcctctca aaacagaaca
7261 gcagagtggg tgaatcaaca gagaagtctt agccctttca tgagtggcgc acttaacatc
7321 tcacatgtta cgccaccctc aagtagggct tccagttctg ggacggtctc aaccgtgccc
7381 aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc gctcttcgca
7441 cacctcaggg tgagggggga gtcacgtgtt tagtgaaaag aaataattgg ctataatgtg
7501 atttctttct aaatttggct aatttgtatc tttt
//