Typing tool
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Typing tool
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Complete norovirus genomes
| PQ557608 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7493
LOCUS PQ557608 7505 bp RNA linear VRL 15-JUN-2025
DEFINITION Norovirus GII isolate KM G2-152 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PQ557608
VERSION PQ557608.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7505)
AUTHORS Xu,S.
TITLE Direct Submission
JOURNAL Submitted (04-NOV-2024) Digestive System Department, The Kunming
Children's Hospital, No. 288 Qianxing Road, The Kunming Children's
Hospital, Kunming, Yunnan 650228, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7505
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="KM G2-152"
/isolation_source="soil"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="2022-03-09"
/note="genotype: GII"
gene <1..5084
/gene="ORF1"
CDS <1..5084
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XJU66294.1"
/translation="DASAAAVANSNNDTAKSSSDGMFSNMAVTFKRALGARPKQPPPK
EIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNTAF
SVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVEL
APLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLRPLNI
LNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN
ELAMVRSIEDAVLDLEAIENNHLTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAA
SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC
DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP
GQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE
RLDEYELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQA
LKNIAIKKCQIVYNGGTYTLEADGKGSVRVDKVQSATVQTNNELAGALHHLRCARIRY
YVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDD
EEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEEVAIARATEEDFCEEEEVKIRQRIFRPTRKQRKEERASLGLVTGSEIR
KRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS
THVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLL
IKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPK
LSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR
PNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT
GKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRC
ARAFGGFMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRD
VLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP
TRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPF
ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..974
/gene="ORF1"
/product="p48"
mat_peptide 975..2072
/gene="ORF1"
/product="NTPase"
mat_peptide 2073..2609
/gene="ORF1"
/product="p22"
mat_peptide 2610..3008
/gene="ORF1"
/product="VPg"
mat_peptide 3009..3551
/gene="ORF1"
/product="Pro"
mat_peptide 3552..5081
/gene="ORF1"
/product="RdRp"
gene 5065..6687
/gene="ORF2"
CDS 5065..6687
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XJU66295.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6687..7493
/gene="ORF3"
CDS 6687..7493
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XJU66296.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQNRSLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 acgacgcttc cgctgccgct gttgccaaca gcaacaacga caccgcaaaa tcttcaagtg
61 acggtatgtt ttctaacatg gctgtcactt ttaagcgggc cctcggggcg cggcctaaac
121 agccgccccc gaaggaaata ccacccagac ccccgcgacc acccacacca gaattggtca
181 aaaagatccc tcctccccca cccaacgggg aggatgaact ggtggtctct tacagcgcca
241 aagatggcgt ttccgggctg cctgagctca ccactgtcag acaaccggaa gaaaccaaca
301 cggcgttcag tgtcccccca ctcaaccaaa gggagagcag ggacgccaag gagccactaa
361 ctggaacaat cattgaaatg tgggatggag aaatctacca ttacggcctg tacgtggaac
421 gaggtcttat acttggcgtg cacaagccac cggcagccat tagccttgct aaggtcgagc
481 tagcaccgct ctctttgttc tggaggcctg tatacacccc ccagtatctc atctccccag
541 acactcttag gagattacat ggagagtcat tcccctacac tgcatttgac aacaattgct
601 acgccttttg ttgctgggta ttagacctaa acgactcatg gctaagtagg agaatgattc
661 agaggacaac aggcttcttc aggccgtacc aggattggaa caggaaaccc ctccccacta
721 tggatgattc caaattaaag aaggtagcca acatattctt gtgcactttg tcttcactat
781 tcaccagacc cattaaggac ataataggga agctgagacc tcttaacatc ctcaatatcc
841 tggctacatg tgattggacc ttcgcaggca tagtggaatc cttgatactc ttggcagaac
901 tctttggagt tttctggaca cccccagatg tgtctgcgat gatcgccccc ctgctgggtg
961 actatgaatt gcaaggacct gaggaccttg cagtggaact ggtcccagta gtgatggggg
1021 ggataggttt ggtgctagga tttaccaaag agaaaatcgg aaagatgcta tcatccgctg
1081 catccacttt aagagcttgt aaagaccttg gtgcatacgg actggaaatc ttaaaactgg
1141 tcatgaagtg gttcttccca aagaaagagg aagcaaatga actggctatg gtgagatcca
1201 tcgaggacgc agtgctagac ctcgaggcaa ttgaaaacaa ccacttgacc accctactca
1261 aagacaaaga tagcttggca acctacatga gaactcttga ccttgaggag gagaaagcca
1321 gaaaactctc aaccaaatct gcttcacccg acattgtagg cactatcaac tctcttctgg
1381 cgagaatcgc tgctgcgcgc tccctggtgc accgggcgaa agaagagctc tccagcaggc
1441 cgagacctgt cgttgtgatg atatcgggaa gaccagggat agggaaaact caccttgcca
1501 gggagctggc caagaagatc gcggcctccc tcacagggga ccagcgtgtg ggccttatcc
1561 cacgcaatgg tgtcgaccac tgggacgcat acaagggcga aagagttgtc ctatgggacg
1621 actatggaat gagcaacccc atccacgacg ccctcaggtt gcaggagctt gctgacactt
1681 gccccctcac gctaaattgt gacagaattg agaacaaagg gaaagtcttt gacagtgatg
1741 ccataattat caccaccaat ctggccaacc cagcaccgct ggactatgtc aactttgaag
1801 cgtgctcgag acgtattgat ttcctcgtgt acgcagaagc ccctgaggtg gagaaggcaa
1861 agcgcgactt cccaggtcaa cctgacatgt ggaagaacgc tttcagtcct gacttctcac
1921 acataaaact gtcattggct ccacagggtg gttttgacaa gaacggcaac accccgcatg
1981 gaaaaggggt catgaagacc ctcaccactg gctccctcat cgcccgagca tcagggttac
2041 tccacgagag gctagatgaa tacgaactgc agggcccagc cctcaccact ttcaactttg
2101 accgcaacaa ggtacttgct tttagacagc ttgctgctga aaacaagtat gggctgatgg
2161 acacaatgag agttggaaaa cagctcaagg atgtcaagac catgtcagac ctcaaacaag
2221 cactcaagaa catcgcgatc aagaagtgcc agatagtgta caatggtgga acctacacac
2281 ttgaggctga tggcaagggt agtgtgagag ttgacaaagt gcaaagtgcc actgtgcaga
2341 ccaacaatga actagccggt gccctacacc acctaaggtg tgctagaatc aggtactatg
2401 tcaagtgcgt ccaggaggca ctgtattcca tcatccagat cgctggggct gcattcgtca
2461 ccacgcgcat cgctaagcgc atgaatatac agaatctctg gtccaaacca caggtggaag
2521 acacagaaga gatggccaac aaagatggtt gcctaaaacc caaagatgat gaagagtttg
2581 tcgtctcatc cgacgacatc aaaactgagg gcaagaaagg gaagaacaag tccggccgtg
2641 gcaagaagca cacagccttt tcaagtaaag ggctcagtga tgaggagtac gatgagtaca
2701 agagaatcag agaagaaagg aatggtaagt actccataga agagtacctt caggacagag
2761 acaggtacta cgaggaggtg gctattgcca gggcaaccga agaggacttc tgtgaagaag
2821 aagaggtcaa aatccggcag agaattttca gaccaacaag gaaacaacgc aaagaagaga
2881 gggcctctct cggcttggtc acaggctctg aaatcaggaa aagaaaccca gaagacttca
2941 aacccaaggg aaagctgtgg gctgatgatg acaggagtgt tgactacaat gagaaactca
3001 gctttgaggc cccaccaagc atctggtcgc ggatagtcaa ctttggttca ggctggggct
3061 tctgggtctc ccccagtctg tttataacat caacccatgt cataccccaa ggtgcaaaag
3121 agttcttcgg agtccccatc aagcaaatcc agatacacaa gtcaggtgag ttttgccggt
3181 tgagatttcc aaagccaatc agaactgatg tgacgggcat gattctagaa gaaggtgcgc
3241 ccgaggggac cgtggccaca ctgctcatca agagaccaac tggagagctc atgcctctgg
3301 cagccagaat ggggacccat gcaaccatga aaattcaggg gcgcacagtt ggagggcaaa
3361 tgggtatgct cctgacagga tccaacgcca agagtatgga cctaggcaca acaccaggcg
3421 actgcggctg cccctacatc tacaagaggg ggaatgacta cgtggtcata ggagtccata
3481 cggccgctgc ccgtggagga aacactgtca tatgcgccac ccaggggagt gagggagaag
3541 ccacacttga aggaggtgac agtaaaggga catactgtgg cgcaccaatc ttgggcccag
3601 ggagcgctcc gaagctcagc accaagacta agttttggag atcatccaca acaccactcc
3661 cacctggcac ctacgaacca gcctacctcg gtggcaaaga ccctagagtc aaaggtggcc
3721 cttcattgca acaagttatg agggaccagc tgaagccatt cacagagccc agaggcaaac
3781 caccaagacc aaatgtgttg gaagctgcca agaaaaccat catcaatgtc cttgagcaaa
3841 caattgatcc accccaaaaa tggtcatttg cgcaagcttg tgcatccctt gacaaaacca
3901 cctccagcgg ccacccgcac cacatgcgga aaaacgactg ttggaatggg gagtccttca
3961 caggaaaatt ggctgatcaa gcctccaagg ccaacctaat gtttgaggaa ggaaagaaca
4021 tgactccagt ttacacaggt gcacttaaag atgagttggt aaagaccgat aaagtttatg
4081 gtaaggtcaa gaagaggctt ctgtggggtt cagatctggc gaccatgata cggtgcgccc
4141 gagcttttgg aggctttatg gatgaactca aggcacactg tgtcacgctt cctgtcagag
4201 ttggtatgaa catgaatgaa gatggcccca tcatctttga gaagcactcc agatatagat
4261 atcactatga tgctgattat tcccggtggg actcaacaca acaaagggat gtactagcag
4321 cagcactaga aatcatggtt aagttctctc cagaaccaca cctggcccag atagttgcag
4381 aagacctcct ttcccctagc gtgatggatg tgggtgactt tcaaatatca ataagtgagg
4441 gtctcccctc tggagtaccg tgtacctccc agtggaattc catcgcccac tggctcctca
4501 ctctgtgtgc actctctgaa gtcacggacc tgtcccctga tatcattcag gccaactccc
4561 ttttctcctt ctatggtgat gatgagattg taagcacaga tataaagttg gacccagaaa
4621 agctgacagc aaaactcaag gagtacgggc tgaaaccaac ccgccccgac aaaactgagg
4681 gaccccttgt tatctctgaa gacctggatg gcctgacatt tctccggaga actgtgaccc
4741 gtgatccagc tggctggttc ggaaaattgg aacaaagttc aattctcagg caaatgtact
4801 ggaccagggg tcccaaccat gaagacccat ttgagacaat gataccacac tcccaaagac
4861 ccatacaatt gatgtccttg ctaggcgagg ctgcactcca cggcccggca ttctatagca
4921 aaattagcaa attagtcatt gcagagttga aagaaggtgg catggacttt tacgtgccca
4981 gacaagagcc aatgtttaga tggatgagat tctccgatct gagcacgtgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat
5101 gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttatggctct ggagcccgtt
5161 gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atataattga cccctggatt
5221 agaaataatt ttgtacaagc ccctggtgga gagttcacag tatcccccag aaacgctcca
5281 ggtgaaatac tatggagcgc gcccctgggc cctgatctaa atccctactt atcccacttg
5341 gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaattct cgcggggaac
5401 gcgttcaccg ccgggaaggt catatttgca gcagtcccac caaattttcc aactgaaggc
5461 ttgagcccca gccaggtcac tatgtttccc catatagtag tagatgttag gcaactagaa
5521 cctgtgttga ttcccttacc cgatgttagg aataatttct atcattacaa tcaatcaaat
5581 gaccccacca ttaagttgat agcaatgttg tacacaccac ttagggctaa taatgctggg
5641 gatgatgtct tcacagtttc ctgccgagtc ctcacgaggc catcccccga ttttgatttc
5701 atatttctag tgccacccac agttgagtca agaactaaac cattctctgt cccagtttta
5761 actgttgagg agatgaccaa ttcaagattc cccattcctt tggaaaagct gttcacgggc
5821 cccagcagtg cctttgttgt ccagccacaa aacggcaggt gcacaactga tggcgtgctc
5881 ctgggcacca cccaactgtc tcctgtcaac atctgcactt tcagaggaga tgtcacccat
5941 attacaggta gtcataacta cacaatgaat ttggcttctc aaaattggag caattatgac
6001 ccaacagaag aaatcccagc ccctctagga actccagatt ttgtggggaa gattcagggc
6061 gtgctcaccc agaccacaag gacagatggc tcaacacgcg gccacaaagc cacggtgtac
6121 actgggagcg ccgactttgc tccaaaactg ggtagagttc aatttgaaac tgacacaaac
6181 catgattttg aagctaacca aaacacaaag ttcaccccag ttggtgtcat ccaagatggt
6241 ggcaccaccc accgaaatga accccaacag tgggtgctcc caagttactc aggcagaaac
6301 actcctaatg tgcatctggc ccccgctgta gcccccactt tcccgggtga gcaacttctc
6361 ttcttcagat ccaccatgcc cggatgcagc gggtacccca acatggattt ggactgtctg
6421 ctcccccagg aatgggtgca gtacttctac caagaggcag ccccagcaca atctgatgtg
6481 gctctgctaa gatttgtgaa tccagacaca ggtagggttt tgtttgagtg taaacttcat
6541 aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat tccccccaat
6601 ggttatttta ggtttgattc ctgggtcaac cagttttaca cgcttgcccc catgggaaat
6661 ggaacggggc gtagacgtgc actataatgg ctggagcttt ctttgctgga ttggcatctg
6721 atgtccttgg ctctgggctt ggttccctta tcaatgctgg ggctggggcc atcaaccaaa
6781 aagttgagtt tgaaaataac agaaaattgc aacaagcatc cttccaattt agcagcaatc
6841 tacaacaggc ttcctttcaa catgacaaag agatgcttca agcacaaatt gaagccacta
6901 aaaggctaca acaggaaatg atgaaagtca agcaggcaat gctcctggag ggtgggttct
6961 ctgagacaga tgcagcccgc ggggcaatca acgcccccat gacaaaagct ttggactgga
7021 gcgggacaag atactgggct cccgatgcta ggactacaac atataatgca ggccgctttt
7081 ccacccctca accatcgggg gcactgccag gaagagctaa tctcagggat gctgtccctg
7141 ctcggggttc ctctagtaag tcttctaatt cttctactgc tacttctgtg tactcaaatc
7201 aaaccacctc aacgagactt ggttctacag ctggttctgg caccagtgtc tcgagtttcc
7261 cgtcaactgc aaggactagg agctgggttg aggatcaaaa taggagtttg tcacctttca
7321 tgaggggggc ccacaacata tcgtttgtca ccccaccatc tagcagatcc tctagccaag
7381 gcacagtctc aaccgtgcct aaagaggttt tggactcctg gactggcgct ttcaacacgc
7441 gcaggcagcc actcttcgct cacattcgta agcgagggga gtcacgggtg taatgtgaaa
7501 gacaa
//