Typing tool
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Typing tool
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Complete norovirus genomes
| PQ557607 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5083
ORF2: 5064..6686
ORF3: 6686..7492
LOCUS PQ557607 7492 bp RNA linear VRL 15-JUN-2025
DEFINITION Norovirus GII isolate KM G2-145 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PQ557607
VERSION PQ557607.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7492)
AUTHORS Xu,S.
TITLE Direct Submission
JOURNAL Submitted (04-NOV-2024) Digestive System Department, The Kunming
Children's Hospital, No. 288 Qianxing Road, The Kunming Children's
Hospital, Kunming, Yunnan 650228, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7492
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="KM G2-145"
/isolation_source="soil"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="2022-01-25"
/note="genotype: GII"
gene <1..5083
/gene="ORF1"
CDS <1..5083
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="XJU66291.1"
/translation="DASAAAVANSNNDTAKSSSDGMFSNMAVTFKRALGARPKQPPPK
EIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVKQPEETNTAF
SVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVEL
APLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLRPLNI
LNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN
ELAMVRSIEDAVLDLEAIENNHLTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINSLLARIAAARPLVHRAKEELSSRPKTVVVMISGRPGIGKTPPARELAKKIAA
SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC
DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP
GQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE
RIDEYEMQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQA
LKNIAIKKCQIVYNGGTYTLEADGKGSVRVDKVQSATVQTNNELAGALHHLRCARIRY
YVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDTEEMANKDGCLKPKDD
EEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEEVAIARATEEDFCEEEEVKIRQRIFRPTRKQRKEERASLGLVTGSEIR
KRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITS
THVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLL
IKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPK
LSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR
PNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT
GKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRC
ARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRD
VLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP
TRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPF
ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..973
/gene="ORF1"
/product="p48"
mat_peptide 974..2071
/gene="ORF1"
/product="NTPase"
mat_peptide 2072..2608
/gene="ORF1"
/product="p22"
mat_peptide 2609..3007
/gene="ORF1"
/product="VPg"
mat_peptide 3008..3550
/gene="ORF1"
/product="Pro"
mat_peptide 3551..5080
/gene="ORF1"
/product="RdRp"
gene 5064..6686
/gene="ORF2"
CDS 5064..6686
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XJU66292.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6686..7492
/gene="ORF3"
CDS 6686..7492
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XJU66293.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSFTATSVYSNQTTSTRLGSTAGSGASVSSFPSTARTRSWVEDQNRSLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cgacgcttcc gctgccgctg ttgccaacag caacaacgac accgcaaaat cttcaagtga
61 cggtatgttt tctaacatgg ctgtcacttt taagcgggct ctcggggcgc ggcctaaaca
121 gccgcccccg aaggaaatac cacccagacc cccgcgacca cccacaccag aattggtcaa
181 aaagatccct cctcccccac ccaacgggga ggatgaactg gtggtctctt acagcgccaa
241 agatggcgtt tccggactgc ctgagctcac cactgtcaaa caaccggaag aaaccaacac
301 ggcgttcagt gtccccccac tcaaccaaag ggagagcagg gacgccaagg agccactaac
361 tggaacaatc attgaaatgt gggatggaga aatctaccat tacggcctgt acgtggaacg
421 aggtcttata cttggtgtgc acaagccacc ggcagccatt agccttgcta aggtcgagct
481 agcaccgctc tctttgttct ggaggcctgt atacaccccc cagtatctca tctccccaga
541 cactcttagg agattacatg gagagtcatt cccctacact gcatttgaca acaattgcta
601 cgccttttgt tgctgggtat tagacctaaa cgactcatgg ctaagcagga gaatgattca
661 gaggacaaca ggcttcttca ggccgtacca ggattggaac aggaaacccc tccccactat
721 ggatgattcc aaattaaaga aggtagccaa catattcttg tgcactttgt cttcactatt
781 caccagaccc attaaggaca taatagggaa gctgagacct cttaacatcc tcaacatcct
841 ggctacatgt gattggacct tcgcaggcat agtggaatcc ttgatactct tggcagaact
901 ctttggagtt ttctggacac ccccagatgt gtctgcgatg atcgcccccc tgctgggtga
961 ctatgaattg caaggacctg aggaccttgc agtggaactg gtcccagtag tgatgggggg
1021 gataggtttg gtgctaggat ttaccaaaga gaaaatcgga aagatgctat catccgctgc
1081 atccacttta agagcttgta aagaccttgg tgcatacgga ctggaaatct taaaactggt
1141 catgaagtgg ttcttcccaa agaaagagga agcaaatgaa ctggctatgg tgagatccat
1201 cgaggacgca gtgctagacc tcgaggcaat tgaaaacaac cacttgacca ccctactcaa
1261 agacaaagat agcttggcaa cctacatgag aactcttgac cttgaggagg agaaagccag
1321 aaaactctca accaaatctg cttcacccga cattgtaggc actatcaact ctcttctggc
1381 gagaatcgct gctgcacgtc ccctggtgca ccgggcgaaa gaagagctct ccagcaggcc
1441 gaaaaccgtc gttgtgatga tatcgggaag accggggata gggaaaactc cccctgccag
1501 ggagctggcc aagaagatcg cggcctccct cacaggggac cagcgtgtgg gccttatccc
1561 acgcaatggt gtcgaccact gggacgcata caagggcgaa agagttgtcc tatgggacga
1621 ctatggaatg agcaacccca tccacgacgc cctcaggttg caggagcttg ctgacacttg
1681 ccccctcacg ctaaattgtg acagaattga gaacaaaggg aaagtctttg acagtgatgc
1741 cataattatc accaccaatc tggccaaccc agcaccgctg gactatgtca actttgaagc
1801 gtgctcgaga cgtattgatt tcctcgtgta cgcagaagcc cctgaggtgg agaaggcaaa
1861 gcgcgacttc ccaggtcaac ctgacatgtg gaagaacgct ttcagtcctg acttctcaca
1921 cataaaactg tcattggctc cacagggtgg ttttgacaag aacggcaaca ccccgcatgg
1981 aaaaggggtc atgaagaccc tcaccactgg ctccctcatc gcccgagcat cagggttact
2041 ccacgagagg atagatgaat atgaaatgca gggcccagcc ctcaccactt tcaactttga
2101 ccgcaacaag gtacttgctt ttagacagct tgctgctgaa aacaagtatg ggctgatgga
2161 cacaatgaga gttggaaaac agctcaagga tgtcaagacc atgtcagacc tcaaacaagc
2221 actcaagaac atcgcgatca agaagtgcca gatagtgtac aatggtggaa cctacacact
2281 tgaggctgat ggcaagggta gtgtgagagt tgacaaagtg caaagtgcca ctgtgcagac
2341 caacaatgaa ctagccggtg ccctacacca cctaaggtgt gctagaatca ggtactatgt
2401 caagtgcgtc caggaggcac tgtattccat catccagatc gctggggctg cattcgtcac
2461 cacgcgcatc gctaagcgca tgaatataca gaatctctgg tccagaccac aggtggaaga
2521 cacagaagag atggccaaca aagatggttg cctaaaaccc aaagatgatg aagagtttgt
2581 cgtctcatcc gacgacatca aaactgaggg caagaaaggg aagaacaagt ccggccgtgg
2641 caagaagcac acagcctttt caagtaaagg gctcagtgat gaggagtacg atgagtacaa
2701 gagaatcaga gaagaaagga atggtaagta ctccatagaa gagtaccttc aggacagaga
2761 caggtactac gaggaggtgg ctattgccag ggcaaccgaa gaggacttct gtgaagaaga
2821 agaggtcaaa atccggcaga gaattttcag accaacaagg aaacaacgca aagaagagag
2881 ggcctctctc ggcttggtca caggctctga aatcaggaaa agaaacccag aagacttcaa
2941 acccaaggga aagctgtggg ctgatgatga caggagtgtt gactacaatg agaaactcaa
3001 ctttgaggcc ccaccaagca tctggtcgcg gatagtcaac tttggttcag gctggggctt
3061 ctgggtctcc cccagtctgt ttataacatc aacccatgtc ataccccaag gtgcaaaaga
3121 gttcttcgga gtccccatca agcaaatcca gatacacaag tcaggtgagt tttgccggtt
3181 gagatttcca aagccaatca gaactgatgt gacgggcatg attctagaag aaggtgcgcc
3241 cgaggggacc gtggccacac tgctcatcaa gagaccaact ggagagctca tgcctctggc
3301 agccagaatg gggacccatg caaccatgaa aattcagggg cgcacagttg gagggcaaat
3361 gggtatgctc ctgacaggat ccaacgccaa gagtatggac ctaggcacaa caccaggcga
3421 ctgcggctgc ccctacatct acaagagggg gaatgactac gtggtcatag gagtccatac
3481 ggccgctgcc cgtggaggaa acactgtcat atgcgccacc caggggagtg agggagaagc
3541 cacacttgaa ggaggtgaca gtaaagggac atactgtggc gcaccaatct tgggcccagg
3601 gagcgctccg aagctcagca ccaagactaa gttttggaga tcatccacaa caccactccc
3661 acctggcacc tacgaaccag cctacctcgg tggcaaagac cctagagtca aaggtggccc
3721 ttcattgcaa caagttatga gggaccagct gaagccattc acagagccca gaggcaaacc
3781 accaagacca aatgtgttgg aagctgccaa gaaaaccatc atcaatgtcc ttgagcaaac
3841 aattgatcca ccccaaaaat ggtcattcgc gcaagcttgt gcatcccttg acaaaaccac
3901 ctccagcggc cacccgcacc acatgcggaa aaacgactgt tggaatgggg agtccttcac
3961 aggaaaattg gctgatcaag cctccaaggc caacctaatg tttgaggaag gaaagaacat
4021 gactccagtt tacacaggtg cacttaaaga tgagttggta aagaccgata aagtttatgg
4081 taaggtcaag aagaggcttc tgtggggttc agatctggcg accatgatac ggtgcgcccg
4141 agcttttgga ggccttatgg atgaactcaa ggcacactgt gtcacgcttc ctgtcagagt
4201 tggtatgaac atgaatgaag atggtcccat catctttgag aagcactcca gatatagata
4261 tcactatgat gctgattatt cccggtggga ctcaacacaa caaagggatg tactagcagc
4321 agcactagaa atcatggtta agttctctcc agaaccacac ctggcccaga tagttgcaga
4381 agacctcctt tcccctagcg tgatggatgt gggtgacttt caaatatcaa taagtgaggg
4441 tctcccctct ggagtaccgt gtacctccca gtggaattcc atcgcccact ggctcctcac
4501 tctgtgtgca ctctctgaag tcacggacct gtcccctgat atcattcagg ccaactccct
4561 tttctccttc tatggtgatg atgagattgt aagcacagat ataaagttgg acccagaaaa
4621 gctgacagca aaactcaagg agtacgggct gaaaccaacc cgccccgaca aaactgaagg
4681 accccttgtt atctctgaag acctggatgg cctgacattt ctccggagaa ctgtgacccg
4741 tgatccagct ggctggtttg gaaaattgga acaaagttca attctcaggc aaatgtactg
4801 gaccaggggt cccaaccatg aagacccatt tgagacaatg ataccacact cccaaagacc
4861 catacaattg atgtccttgc taggcgaggc tgcactccac ggcccggcat tctatagcaa
4921 aattagcaaa ttagtcattg cagagttgaa agaaggtggc atggactttt acgtgcccag
4981 acaagagcca atgttcagat ggatgagatt ctccgatctg agcacgtggg agggcgatcg
5041 caatctggct cccagttttg tgaatgaaga tggcgtcgag tgacgccaac ccatctgatg
5101 ggtccgcagc caacctcgtc ccagaggtca acaatgaggt tatggctctg gagcccgttg
5161 ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa tgtaattgac ccctggatta
5221 gaaataattt tgtacaagcc cctggtggag agttcacagt atcccccaga aacgctccag
5281 gtgaaatact atggagcgcg cccctgggcc ctgatctaaa tccctactta tcccacttgg
5341 ccagaatgta caatggttat gcaggtggtt ttgaagtgca ggtaattctc gcggggaacg
5401 cgttcaccgc cgggaaggtc atatttgcag cagtcccacc aaattttcca actgaaggct
5461 tgagccccag ccaggtcact atgtttcccc atatagtagt agatgttagg caactagaac
5521 ctgtgttgat tcccttaccc gatgttagga ataatttcta tcattacaat caatcaaatg
5581 accccaccat taagttgata gcaatgttgt acacaccact tagggctaat aatgccgggg
5641 atgatgtctt cacagtttcc tgccgagttc tcacgaggcc atcccccgat tttgatttca
5701 tatttctagt gccacccaca gttgagtcaa gaactaaacc attctctgtc ccagttttaa
5761 ctgttgagga gatgaccaat tcaagattcc ccattccttt ggaaaagttg ttcacgggcc
5821 ccagcagtgc ctttgttgtc cagccacaaa acggcaggtg cacaactgat ggcgtgctcc
5881 tgggcaccac ccaactgtct cctgtcaaca tctgcacttt cagaggagat gtcacccata
5941 ttacaggtag tcataactac acaatgaatt tggcttctca aaattggagc aattatgacc
6001 caacagaaga aatcccagcc cctctaggaa ctccagattt tgtggggaag attcagggcg
6061 tgctcaccca gaccacaagg acagacggct caacacgcgg ccacaaagcc acagtgtaca
6121 ctgggagcgc cgactttgct ccaaaactgg gtagagttca atttgaaact gacacaaacc
6181 atgattttga agctaaccaa aacacaaagt tcaccccagt tggtgtcatc caagatggtg
6241 gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc aagttactca ggcagaaaca
6301 ctcctaatgt gcatctggcc cccgctgtag cccccacttt cccgggtgag caacttctct
6361 tcttcagatc caccatgccc ggatgcagcg ggtaccccaa catggatttg gactgcctgc
6421 tcccccagga atgggtgcag tacttctacc aagaggcagc cccagcacaa tctgatgtgg
6481 ctctgctaag atttgtgaat ccagacacag gtagggtttt gtttgagtgt aaacttcata
6541 aatcaggcta tgttacagtg gctcacactg gccaacatga tttggttatt ccccccaatg
6601 gttattttag gtttgattcc tgggtcaacc agttttacac gcttgccccc atgggaaatg
6661 gaacggggcg tagacgtgca ctataatggc tggagctttc tttgctgggt tggcatctga
6721 tgtccttggc tctggtcttg gttcccttat caatgctggg gctggggcca tcaaccaaaa
6781 agttgagttt gaaaataaca gaaaattgca acaagcatcc ttccaattta gcagcaatct
6841 acaacaggct tcctttcaac atgacaaaga gatgcttcaa gcacaaattg aagccactaa
6901 aaggctacaa caggaaatga tgaaagtcaa gcaggcaatg ctcctggagg gtgggttctc
6961 tgagacagat gcagcccgcg gggcaatcaa cgcccccatg acaaaagctt tggactggag
7021 cgggacaaga tactgggctc ccgatgctag gactacaaca tataatgcag gccgcttttc
7081 caccccccaa ccatcggggg cactgccagg aagagctaat ctcagggatg ctgtccctgc
7141 tcggggttcc tctagtaagt cttctaattc ttttactgct acttctgtgt actcaaatca
7201 aaccacctca acgagacttg gttctacagc tggttctggc gccagtgtct cgagcttccc
7261 gtcaactgca aggactagga gctgggttga ggatcaaaat aggagtttgt cacctttcat
7321 gaggggggcc cacaacatat cgtttgtcac cccaccatct agcagatcct ctagccaagg
7381 cacagtctca accgtgccta aagagatttt ggactcctgg actggcgctt tcaacacgcg
7441 caggcagcca ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt ag
//