Typing tool
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Typing tool
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Complete norovirus genomes
| PQ557606 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5060
ORF2: 5041..6663
ORF3: 6663..7469
LOCUS PQ557606 7469 bp RNA linear VRL 15-JUN-2025
DEFINITION Norovirus GII isolate KM G2-143 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PQ557606
VERSION PQ557606.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7469)
AUTHORS Xu,S.
TITLE Direct Submission
JOURNAL Submitted (04-NOV-2024) Digestive System Department, The Kunming
Children's Hospital, No. 288 Qianxing Road, The Kunming Children's
Hospital, Kunming, Yunnan 650228, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7469
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="KM G2-143"
/isolation_source="soil"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="2022-01-25"
/note="genotype: GII"
gene <1..5060
/gene="ORF1"
CDS <1..5060
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XJU66288.1"
/translation="NNDKEKSSGEGLFTNMSSTLKKALGARPKRPAPRDEPQKPPRPP
TPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSVPPLSLR
ENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVELTPLSLYWR
VVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGFF
RPYQEWNRKPLPTMDDSKIKKVANIFLCSLSSLFTRPIKDIIGKLKPLNILNILATCD
WTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGIG
LVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSI
EDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINSL
LARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRV
GLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGK
VFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKN
AFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQ
GPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAIKK
CQIVYNGGTYTLEADGKGSVKVDRVQSATVQTNNELAGALHHLRCARIRYYVKCVQEA
LYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVSSD
DIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRY
YEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDFK
PKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGA
KEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGEL
MPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYV
VIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFW
RSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPKVLEAAK
KTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQAS
KANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMVRCARAFGGLM
DELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEI
MVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLC
ALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEG
PLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQ
RPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTW
EGDRNLAPSFVNEDGVE"
mat_peptide <1..950
/gene="ORF1"
/product="p48"
mat_peptide 951..2048
/gene="ORF1"
/product="NTPase"
mat_peptide 2049..2585
/gene="ORF1"
/product="p22"
mat_peptide 2586..2984
/gene="ORF1"
/product="VPg"
mat_peptide 2985..3527
/gene="ORF1"
/product="Pro"
mat_peptide 3528..5057
/gene="ORF1"
/product="RdRp"
gene 5041..6663
/gene="ORF2"
CDS 5041..6663
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XJU66289.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6663..7469
/gene="ORF3"
CDS 6663..7469
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XJU66290.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNSGHFSTPQPSGALPGRANLRDAVPARGPSTKSS
NSSAATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 acaacaacga caaggaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct
61 taaagaaagc cctcggggct aggcccaaac ggcctgcccc gagagacgaa ccacaaaagc
121 ccccgagacc accaactccc gagttggtca agagaatacc cccccctcca cctaatggcg
181 aagaagaaga agaaccagtc attaggtatg aggttaagag tgggatctct ggcctgcccg
241 agctcacaac agttccccaa ccggacgtgg ccaacacagc atttagtgtt ccaccactga
301 gcttgagaga aaacagggag gccaaggaac cgctaacagg ggcaatacta gagatgtggg
361 atggagagat ataccactat ggcctgtacg tggagaaagg cttagtgttg ggtgtgcaca
421 aaccacctgc agccataagc atggcaagag tggagttgac gccgctgtca ttgtactggc
481 gtgtggtgta cactccccaa tacctcatct cccctgaaac tctcaggagg ctcaacggag
541 aggcgttccc ttacaccgct ttcgataata actgctatgc cttttgctgc tgggtgttag
601 acctcaatga ctcatggctt agcaggagga tggtgcaaag gacaacgggc ttcttcaggc
661 cttaccaaga gtggaataga aaacccttgc ctactatgga tgactccaaa ataaagaagg
721 tggcaaatat attcctatgt tcattgtctt cactattcac cagacccatt aaggacataa
781 tagggaagtt gaaacctctt aacatcctta atattctggc tacatgtgat tggaccttcg
841 caggtatagt ggaatcctta atactcttgg cagaactctt tggagttttc tggacacccc
901 cagatgtgtc tgcgatgatc gcccccttgc taggtgatta tgaactgcaa ggacctgagg
961 accttgcagt ggaactggtc ccaatagtga tgggggggat aggtttggtg ctaggattta
1021 ccaaagagaa aatcggaaag atgctatcat ccgctgcatc cactttaaga gcttgtaaag
1081 accttggtgc atacggactg gaaatcttaa aattggtcat gaagtggttc ttcccaaaga
1141 aagaggaagc aaatgaactg gctatggtga gatccatcga ggatgcagta ctagacctcg
1201 aggcaattga aaacaaccac atgaccaccc tactcaaaga caaagacagc ttggcaacct
1261 acatgagaac ccttgacctt gaggaggaga aagccagaaa actctcaacc aaatctgctt
1321 cacccgatat tgtgggcaca atcaactctc ttctggcaag aatcgctgct gcacgctccc
1381 tagtgcatcg ggcgaaagaa gagctctcca gcaggccgag acctgtcgtt gtgatgatat
1441 cgggaagacc agggataggg aaaactcacc ttgccaggga gctggccaag aagatcgcgg
1501 cctccctcac aggggaccag cgtgtgggcc ttatcccacg caatggtgtc gaccactggg
1561 acgcatacaa gggcgaaagg gttgtcctat gggacgacta tggaatgagc aaccccatcc
1621 atgatgccct caggttgcag gagcttgctg acacttgccc cctcacgcta aattgtgaca
1681 gaattgagaa caaagggaaa gtctttgaca gtgatgccat aattatcacc accaatctgg
1741 ccaacccagc accactggat tatgtcaact ttgaagcgtg ctcgagacgc attgatttcc
1801 tcgtgtacgc agaagcccct gaggtggaga aggcaaagcg cgacttccca ggtcaacctg
1861 acatgtggaa gaacgctttc agtcctgact tctcacacat aaaactgtca ttggctccac
1921 agggtggttt tgacaagaac ggcaacaccc cgcatggaaa aggggtcatg aagaccctca
1981 ccactggctc cctcatcgcc cgagcatcag ggttactcca tgagaggcta gatgagtatg
2041 aactgcaagg cccagccctc accactttca actttgaccg caacaagata cttgccttta
2101 gacagcttgc tgctgaaaac aagtatgggc tgatggacac aatgagagtt ggaaaacagc
2161 tcaaggatgt caagaccatg tcagacctca aacaagcact caagaacatc gcgatcaaga
2221 agtgccagat agtgtacaat ggtggcacct acacacttga ggctgatggc aagggtagtg
2281 tcaaagttga cagagtgcaa agtgccactg tgcagaccaa caatgaacta gccggtgccc
2341 tacaccacct aaggtgcgct agaatcagat actatgttaa gtgcgtccag gaggcactgt
2401 attccatcat ccaaatcgct ggggctgcat tcgtcaccac gcgcatcgct aagcgcatga
2461 atatacagaa tctctggtcc aagccacagg tggaagacac agaagagatg gccaacaaag
2521 atggttgcct aaaacccaaa gatgatgaag agtttgtcgt ctcatccgac gacatcaaaa
2581 ctgagggcaa gaaagggaag aacaaatccg gccgtggcaa gaagcacaca gccttttcaa
2641 gtaaagggct cagtgatgag gagtacgatg agtacaagag aatcagagaa gaaaggaatg
2701 gtaagtactc catagaagag taccttcagg acagagacag gtactacgag gaggtggcca
2761 ttgccagggc aaccgaagag gacttctgtg aagaagaaga ggccaaaatc cggcagagaa
2821 ttttcagacc aacaaggaaa caacgcaaag aagagagggc ctctctcggc ttggtcacag
2881 gctctgaaat caggaaaaga aacccagaag acttcaaacc caagggaaag ctgtgggctg
2941 atgatgacag gagtgttgac tacaatgaga aactcaactt tgaggcccca ccaagcatct
3001 ggtcgcggat agtcaacttt ggttcaggct ggggcttctg ggtctccccc agtctgttta
3061 taacatcaac ccatgtcata ccccaaggtg caaaagagtt cttcggagtc cccatcaagc
3121 aaatccagat acacaagtca ggtgagtttt gccggttgag atttccaaag ccaatcagaa
3181 ctgatgtgac gggcatgatt ctagaagaag gtgcgcccga ggggaccgtg gccacactgc
3241 tcatcaagag accaactgga gagctcatgc ctctggcagc cagaatgggg acccatgcaa
3301 ccatgaaaat tcaggggcgc acagttggag ggcaaatggg tatgctcctg acaggatcca
3361 acgccaagag tatggaccta ggcacaacac caggcgactg cggctgcccc tacatctaca
3421 agagggggaa tgactacgtg gtcataggag tccatacggc cgctgcccgt ggaggaaaca
3481 ctgtcatatg cgccacccag gggagtgagg gagaagccac acttgaagga ggtgacagta
3541 aagggacata ctgtggcgca ccaatcttgg gcccagggag cgctccgaag ctcagcacca
3601 agactaagtt ttggagatca tccacaacac cactcccacc tggcacctac gaaccagcct
3661 acctcggtgg caaagaccct agagtcaaag gtggcccttc attgcaacaa gttatgaggg
3721 accagctgaa gccattcaca gagcccagag gcaaaccacc aagaccaaaa gtgttggaag
3781 ctgccaagaa aaccatcatc aatgtccttg agcaaacaat tgatccaccc caaaaatggt
3841 catttgcgca agcttgcgcg tcccttgaca aaaccacctc cagcggccac ccgcaccaca
3901 tgcggaaaaa cgactgttgg aatggggagt ccttcacagg aaaattggct gatcaagcct
3961 ccaaggccaa cctaatgttt gaagagggaa agaacatgac tccagtctac acaggtgcac
4021 ttaaagatga gttggtaaag accgataaag tttatggtaa ggtcaagaag aggcttctgt
4081 ggggttcaga tctggcgacc atggtacggt gcgcccgagc ttttggaggc cttatggatg
4141 aactcaaggc acactgtgtc acactccctg tcagagttgg tatgaacatg aatgaggatg
4201 gccccatcat ctttgagaag cactccagat acagatatca ctatgatgct gattattccc
4261 ggtgggactc aacacaacaa agggatgtgc tagcagcagc actagaaatc atggttaagt
4321 tctctccaga accacacctg gcccagatag ttgcagaaga cctcctttcc cctagcgtga
4381 tggatgtagg tgactttcaa atatcaataa gtgagggtct cccatctggg gtaccttgta
4441 cctcccagtg gaattccatc gcccactggc tcctcactct gtgtgcactc tctgaagtca
4501 cggacctgtc ccccgatatc attcaggcca actccctttt ctccttctat ggtgatgatg
4561 agattgtaag cacagacata aagttggacc cagagaagct gacagcaaag ctcaaggagt
4621 acgggctgaa accaacccgc cccgacaaaa ctgaaggacc ccttgttatc tctgaagacc
4681 tggatggcct gacattcctc cggagaactg tgacccgtga tccagctggc tggtttggaa
4741 aattggaaca aagttcaatt ctcaggcaaa tgtactggac caggggcccc aaccatgaag
4801 atccatttga aacaatgata ccacactccc aaagacccat acaattgatg tccttgctgg
4861 gcgaggctgc actccacggc ccggcattct atagcaaaat tagcaaacta gtcattgcag
4921 agttgaagga aggtggcatg gatttttacg tacccagaca agagccaatg ttcagatgga
4981 tgagattctc agatctgagt acgtgggagg gcgatcgcaa tctggctccc agttttgtga
5041 atgaagatgg cgtcgagtga cgccaaccca tctgatgggt ccgcagccaa cctcgtccca
5101 gaggtcaaca atgaggttat ggctctggag cccgttgttg gtgccgccat tgcagcacct
5161 gtagcgggcc aacaaaatgt aattgacccc tggataagaa ataattttgt acaagcccct
5221 ggtggagagt ttacagtatc ccctagaaac gctccaggtg aaatactatg gagcgcgccc
5281 ttgggccctg atctaaatcc ctacctatcc catttggcca ggatgtacaa tggttatgca
5341 ggtggttttg aagtgcaggt aattctcgcg gggaacgcgt tcaccgccgg gaaggtcata
5401 tttgcagcag tcccaccaaa ttttccaact gaaggcttga gccccagcca ggtcactatg
5461 ttcccccata tagtagtaga tgttaggcaa ctagaacctg tgctgatccc cttacccgat
5521 gttaggaata atttctatca ttacaatcag tcaaatgatt ccactattaa gttgatagca
5581 atgttgtaca caccacttag ggctaataat gctggggatg atgttttcac agtttcgtgc
5641 cgagttctca cgagaccatc ccccgatttt gatttcatat ttttagtacc acccacagtt
5701 gagtcaagaa ctaaaccatt ctctgtccca gttttaactg ttgaggagat gaccaattca
5761 agattcccca tccctttgga aaagttgttt acaggcccca gcagtgcatt tgtcgttcaa
5821 ccacaaaacg gcagatgcac aactgatggc gtgcttctag gcaccaccca actttctcct
5881 gtcaacatct gcaccttcag aggggatgtc actcacatca caggtagtca caactacact
5941 atgaatttgg cttctcaaaa ttggaacaat tatgatccaa cagaagaaat cccagcccct
6001 ctgggaactc cagattttgt ggggaagatt caaggcatgc tcacccagac cacaaggaca
6061 gatggttcaa cacgcggcca caaagctaca gtgtacactg ggagcgccga ctttgctcca
6121 aaactgggta gagttcaatt tgaaactgac acaaaccacg attttgaagc caatcaaaac
6181 acaaagttca ccccagtcgg tgtcatccaa gatggtagca ccacccaccg aaacgaaccc
6241 cagcagtggg tgctcccaag ttactcaggc agaaatactc acaatgtaca tttggccccc
6301 gctgtagccc ccacctttcc gggtgagcaa ctcctcttct tcagatccac catgcccgga
6361 tgcagcgggt accccaacat ggatttggac tgtctgctcc cccaggaatg ggtgcagtac
6421 ttctaccaag aggcagcccc agcacaatct gatgtggctc tgctaagatt tgtgaatcca
6481 gacacaggta gggttttgtt tgagtgcaag cttcataaat caggctatgt tacagtggct
6541 cacactggcc aacatgattt ggttatcccc cccaatggtt actttaggtt tgattcctgg
6601 gtcaaccagt tctacacgct tgcccccatg ggaaatggaa cggggcgtag acgtgcagta
6661 taatggctgg agctttcttt gctggattgg catctgatgt ccttggctct ggacttggtt
6721 cccttatcaa tgctggggct ggggccatca accaaaaggt tgagtttgaa aataacagaa
6781 aattgcaaca agcatccttt caatttagca gcaatttgca acaggcttcc tttcaacatg
6841 acaaagagat gctccaagca caaattgagg ccaccaaaaa gttacaacag gaaatgatga
6901 gagttaagca ggcaatgctc ctagagggtg ggttctctga gacagatgca gcccgcgggg
6961 caattaacgc ccccatgaca aaggctttgg actggagcgg gacaaggtac tgggctccag
7021 atgctagaat tacaacatac aattcaggcc acttttccac ccctcaacca tcgggggcac
7081 tgccaggaag agctaatctt agggatgctg tccctgctcg gggaccctcc accaaatctt
7141 ctaactcttc tgctgccact tctgtgtact caaatcaaac tacttcaacg agacttggtt
7201 ctacagctgg ttctggaacc agtgtctcga gcctcccgtc gactgcaagg actaggagct
7261 gggttgagga tcaaaatagg aatttgtcac ctttcatgag gggggcccac aacatatcat
7321 ttgtcacccc accatctagc agatcctcta gccaaggcac agtctcaacc gtgcctaaag
7381 aaattttgga ctcctggact ggcgctttca acacgcgcag gcagcctctc ttcgctcaca
7441 ttcgcaagcg aggggagtca cgggtataa
//