Typing tool
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Typing tool
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Complete norovirus genomes
| PQ557605 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7493
LOCUS PQ557605 7493 bp RNA linear VRL 15-JUN-2025
DEFINITION Norovirus GII isolate KM G2-141 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PQ557605
VERSION PQ557605.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7493)
AUTHORS Xu,S.
TITLE Direct Submission
JOURNAL Submitted (04-NOV-2024) Digestive System Department, The Kunming
Children's Hospital, No. 288 Qianxing Road, The Kunming Children's
Hospital, Kunming, Yunnan 650228, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7493
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="KM G2-141"
/isolation_source="soil"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="2022-01-08"
/note="genotype: GII"
gene <1..5084
/gene="ORF1"
CDS <1..5084
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="XJU66285.1"
/translation="DASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPK
EIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNTAF
SVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVEL
APLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
VQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNI
LNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV
PIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN
ELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAA
SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC
DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP
GQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE
RLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQA
LKNIAIKKCQIVYNGGTYTLEADGKGSVKVDRVQSATVQTNNELAGALHHLRCARIRY
YVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDD
EEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR
KRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITS
THVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLL
IKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPK
LSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR
PNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT
GKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMVRC
ARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRD
VLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP
TRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPF
ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..974
/gene="ORF1"
/product="p48"
mat_peptide 975..2072
/gene="ORF1"
/product="NTPase"
mat_peptide 2073..2609
/gene="ORF1"
/product="p22"
mat_peptide 2610..3008
/gene="ORF1"
/product="VPg"
mat_peptide 3009..3551
/gene="ORF1"
/product="Pro"
mat_peptide 3552..5081
/gene="ORF1"
/product="RdRp"
gene 5065..6687
/gene="ORF2"
CDS 5065..6687
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XJU66286.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVIQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSANFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6687..7493
/gene="ORF3"
CDS 6687..7493
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XJU66287.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQTSFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWNGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPVRGSPSKSS
NSSTAASVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 acgacgcttc cgctgccgct gttgccaaca gcaacaacga catcgcaaaa tcttcaagtg
61 acggtgtgtt ttctaacatg gctgtcactt ttaagcgggc cctcggggcg cggcctaaac
121 agccgccccc gaaggaaata ccacccagac ccccgcgacc acccacacca gaattagtca
181 aaaagatccc tcctccccca cccaacgggg aggatgaact agtggtctct tacagcgcca
241 aagatggcgt ttccggactg cctgagctca ccactgtcag acaaccggaa gaaaccaaca
301 cggcgttcag tgtcccccca ctcaaccaaa gggagagcag ggacgccaag gagccactaa
361 ctggaacaat cattgagatg tgggatggag aaatctacca ctacggcctg tacgtggaac
421 gaggtcttat acttggtgtg cacaagccac cggcagccat tagccttgcc aaggtcgagc
481 tagcaccgct ctccttgttc tggagacctg tatacacccc ccagtatctc atctctccag
541 acactcttag gagattacat ggagagtcat tcccctacac tgcatttgac aacaattgct
601 acgccttttg ttgttgggta ttagacctaa acgactcatg gctaagcagg agaatggttc
661 agagaacaac aggcttcttc aggccgtacc aggattggaa caggaaaccc ctccccacta
721 tggatgattc caaattaaag aaggtagcca acatattctt gtgcactttg tcttcactat
781 tcaccagacc cattaaggac ataataggga agttgaaacc tcttaacatc cttaatattc
841 tggctacatg tgattggacc ttcgcaggta tagtggaatc cttaatactc ttggcagaac
901 tctttggagt tttctggaca cccccagatg tgtctgcgat gatcgccccc ttgctaggtg
961 attatgaact gcaaggacct gaggaccttg cagtggaact ggtcccaata gtgatggggg
1021 ggataggttt ggtgctagga tttaccaaag agaaaatcgg aaagatgcta tcatccgctg
1081 catccacttt aagagcttgt aaagaccttg gtgcatacgg actggaaatc ttaaaattgg
1141 tcatgaagtg gttcttccca aagaaagagg aagcaaatga actggctatg gtgagatcca
1201 tcgaggatgc agtactagac ctcgaggcaa ttgaaaacaa ccacatgacc accctactca
1261 aagacaaaga cagcttggca acctacatga gaacccttga ccttgaggag gagaaagcca
1321 gaaaactctc aaccaaatct gcttcacccg atattgtggg cacaatcaac tctcttctgg
1381 caagaatcgc tgctgcacgc tccctagtgc atcgggcgaa agaagagctc tccagcaggc
1441 cgagacctgt cgttgtgatg atatcgggaa gaccagggat agggaaaact caccttgcca
1501 gggagctggc caagaagatc gcggcctccc tcacagggga ccagcgtgtg ggccttatcc
1561 cacgcaatgg tgtcgaccac tgggacgcat acaagggcga aagggttgtc ctatgggacg
1621 actatggaat gagcaacccc atccatgatg ccctcaggtt gcaggagctt gctgacactt
1681 gccccctcac gctaaattgt gacagaattg agaacaaagg gaaagtcttt gacagtgatg
1741 ccataattat caccaccaat ctggccaacc cagcaccact ggattatgtc aactttgaag
1801 cgtgctcgag acgcattgat ttcctcgtgt acgcagaagc ccctgaggtg gagaaggcaa
1861 agcgcgactt cccaggtcaa cctgacatgt ggaagaacgc tttcagtcct gacttctcac
1921 acataaaact gtcattggct ccacagggtg gttttgacaa gaacggcaac accccgcatg
1981 gaaaaggggt catgaagacc ctcaccactg gctccctcat cgcccgagca tcagggttac
2041 tccatgagag gctagatgag tatgaactgc aaggcccagc cctcaccact ttcaactttg
2101 accgcaacaa gatacttgcc tttagacagc ttgctgctga aaacaagtat gggctgatgg
2161 acacaatgag agttggaaaa cagctcaagg atgtcaagac catgtcagac ctcaaacaag
2221 cactcaagaa catcgcgatc aagaagtgcc agatagtgta caatggtggc acctacacac
2281 ttgaggctga tggcaagggt agtgtcaaag ttgacagagt gcaaagtgcc actgtgcaga
2341 ccaacaatga actagccggt gccctacacc acctaaggtg cgctagaatc agatactatg
2401 ttaagtgcgt ccaggaggca ctgtattcca tcatccaaat cgctggggct gcattcgtca
2461 ccacgcgcat cgctaagcgc atgaatatac agaatctctg gtccaagcca caggtggaag
2521 acacagaaga gatggccaac aaagatggtt gcctaaaacc caaagatgat gaagagtttg
2581 tcgtctcatc cgacgacatc aaaactgagg gcaagaaagg gaagaacaaa tccggccgtg
2641 gcaagaagca cacagccttt tcaagtaaag ggctcagtga tgaggagtac gatgagtaca
2701 agagaatcag agaagaaagg aatggtaagt actccataga agagtacctt caggacagag
2761 acaggtacta cgaggaggtg gccattgcca gggcaaccga agaggacttc tgtgaagaag
2821 aagaggccaa aatccggcag agaattttca gaccaacaag gaaacaacgc aaagaagaga
2881 gggcctctct cggcttggtc acaggctctg aaatcaggaa gagaaaccca gaagacttca
2941 aacccaaggg gaagctgtgg gctgatgatg acagaagtgt tgactacaat gagaaactca
3001 actttgaggc cccaccaagc atctggtcgc ggatagtcaa ctttggttca ggctggggct
3061 tctgggtctc ccccagtttg tttataacat caacccatgt cataccccaa ggtgcaaaag
3121 agttcttcgg agtccctatc aagcaaatcc agatacacaa gtcaggtgaa ttctgccggt
3181 tgagattccc aaagccaatc agaactgatg tgacgggcat gattctagaa gaaggtgcgc
3241 ccgaggggac cgtggccaca ctgctcatca agagaccaac tggagagctc atgcctctgg
3301 cagccagaat ggggacccat gcaaccatga aaattcaagg gcgcacagtt ggagggcaaa
3361 tgggtatgct cctgacagga tccaacgcca agagcatgga cctaggcaca acaccaggcg
3421 actgcggctg cccctacatc tacaagaggg ggaatgacta cgtggtcata ggagtccata
3481 cggccgctgc ccgtggagga aacactgtca tatgtgccac ccaggggagt gagggagaag
3541 ccacacttga aggaggtgac agtaaaggga catactgtgg cgcaccaatc ttgggcccag
3601 ggagcgctcc gaagctcagt accaagacta agttttggag atcatccaca acaccactcc
3661 cacctggcac ctacgaacca gcctacctcg gtggcaaaga ccctagagtc aaaggtggcc
3721 cttcattgca acaagttatg agggaccagc tgaagccatt cacagaaccc agaggcaaac
3781 caccaagacc aaatgtgttg gaagctgcca agaaaaccat catcaatgtc cttgagcaaa
3841 caattgatcc accccaaaaa tggtcatttg cgcaagcttg cgcgtccctt gacaaaacca
3901 cctccagcgg ccacccgcac cacatgcgga aaaacgactg ttggaatggg gagtccttca
3961 caggaaaatt ggctgatcaa gcctccaagg ccaacctaat gtttgaagag ggaaagaaca
4021 tgactccagt ctacacaggt gcacttaaag atgagttggt aaagaccgat aaagtttatg
4081 gtaaggtcaa gaagaggctt ctgtggggtt cagatctggc gaccatggta cggtgcgccc
4141 gagcttttgg aggccttatg gatgaactca aggcacactg tgtcacactc cctgtcagag
4201 ttggtatgaa catgaatgag gatggcccca tcatctttga gaagcactcc agatacagat
4261 atcactatga tgctgattat tcccggtggg actcaacaca acaaagggat gtgctagcag
4321 cagcactaga aatcatggtt aagttctctc cagaaccaca cctggcccag atagttgcag
4381 aagacctcct ttcccctagc gtgatggatg taggtgactt tcaaatatca ataagtgagg
4441 gtctcccatc tggggtacct tgtacctccc agtggaattc catcgcccac tggctcctca
4501 ctctgtgtgc actctctgaa gtcacggacc tgtcccccga tatcattcag gccaactccc
4561 ttttctcctt ctatggtgat gatgagattg taagcacaga cataaagttg gacccagaga
4621 agctgacagc aaagctcaag gagtacgggc tgaaaccaac ccgccccgac aaaactgaag
4681 gaccccttgt tatctctgaa gacctggatg gcctgacatt cctccggaga actgtgaccc
4741 gtgatccagc tggctggttt ggaaaattgg aacaaagttc aattctcagg caaatgtact
4801 ggaccagggg ccccaaccat gaagatccat ttgaaacaat gataccacac tcccaaagac
4861 ccatacaatt gatgtccttg ctgggcgagg ctgcactcca cggcccggca ttctatagca
4921 aaattagcaa actagtcatt gcagagttga aggaaggtgg catggatttt tacgtaccca
4981 gacaagagcc aatgttcaga tggatgagat tctcagatct gagtacgtgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat
5101 gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttatggctct ggagcccgtt
5161 gttggtgccg ccattgcagc acctgtagcg ggccaacaaa atgtaattga cccctggatt
5221 agaaataatt ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca
5281 ggtgaaatac tatggagcgc gcccttgggc cctgatctaa atccctacct atcccatttg
5341 gccaggatgt acaatggtta tgcaggtggt tttgaagtgc aggtaattct cgcggggaac
5401 gcgttcaccg ccgggaaggt catatttgca gcagtcccac caaattttcc aactgaaggc
5461 ttgagcccca gccaggtcac tatgttcccc catatagtag tagatgttag gcaactagaa
5521 cctgtgttga ttcccttacc cgatgttagg aataatttct atcattacaa tcaatcaaat
5581 gaccccacca ttaagttgat agcaatgttg tatacaccac ttagggccaa taatgctggg
5641 gatgatgtct tcacagtttc ttgccgagtt cttacgagac catcccccga ttttgatttc
5701 atatttctag tgccacccac agttgagtca agaactaaac cattctctgt cccagtttta
5761 actgttgagg agatgaccaa ttcaagattc cccattcctt tggaaaagtt gttcacgggt
5821 cccagcagtg cctttgttat ccaaccacaa aacggtaggt gcacgactga tggcgtgctc
5881 ctaggcacca cccaattgtc tcctgtcaac atctgcacct tcagaggaga tgtcacccat
5941 atcacaggta gtcgtaacta cacaatgaat ttggcttctc aaaattggag caattatgac
6001 ccaacagaag aaatcccagc ccctctagga actccagatt ttgtggggaa gattcaaggc
6061 gtgctcaccc aaaccacaag gacagatggc tcaacacgcg gccacaaagc cacagtgtac
6121 actgggagcg ccaactttgc tccaaaactg ggtagagttc aatttgaaac tgacacagac
6181 catgattttg aagctaacca aaacacaaag ttcaccccag ttggtgtcat ccaagatggt
6241 ggcaccaccc accgaaatga accccaacag tgggtgctcc caagttattc aggcagaaat
6301 actcctaatg tgcatctggc ccccgctgta gcccccactt ttccgggtga gcaacttctc
6361 ttcttcagat ccaccatgcc cggatgcagc gggtacccca acatggattt ggactgtctg
6421 ctcccccagg aatgggtaca gtacttctac caagaggcag ccccagcaca atctgatgtg
6481 gctctgctaa gatttgtaaa tccagacaca ggtagggttt tgtttgagtg taagcttcat
6541 aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat cccccccaat
6601 ggttatttta ggtttgattc ctgggtcaac caattttaca cgcttgcccc catgggaaat
6661 ggaacggggc gtagacgtgc actataatgg ctggagcttt ctttgctggg ttggcatctg
6721 atgtccttgg ctctggactt ggttccctta tcaatgctgg ggctggggcc atcaaccaaa
6781 aagttgagtt tgaaaataac agaaaattgc aacaagcatc cttccaattt agcagcaatc
6841 tacaacaaac ttcctttcaa catgacaaag agatgctcca agcacaaatt gaggccacca
6901 aaaggctaca acaggaaatg atgaaagtta agcaggcaat gctcctagag ggtgggttct
6961 ctgagacaga tgcagcccgc ggggcaatca acgcccccat gacaaaagct ttggactgga
7021 acgggacaag gtactgggct cccgatgcta ggactacaac atacaatgcg ggccgctttt
7081 ccacccctca accatcgggg gcactgccag gaagagctaa tcttagggat gctgtccctg
7141 ttcggggttc ccccagtaag tcttctaatt cttctactgc tgcttctgtg tactcaaatc
7201 aaactacttc aacgagactt ggttctacag ctggttctgg taccagtgtc tcgagcttcc
7261 cgtcaactgc aaggactagg agctgggttg aggatcaaag taggaatttg tcacctttca
7321 tgaggggggc ccacaacata tcgtttgtca ccccaccatc tagcagatcc tctagccaag
7381 gcacagtctc aaccgtgccc aaagagattt tggactcctg gactggcgct ttcaacacgc
7441 gcaggcagcc actcttcgct cacattcgta agcgagggga gtcacgggcg taa
//