Typing tool
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Typing tool
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Complete norovirus genomes
| PQ557604 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5079
ORF2: 5060..6682
ORF3: 6682..7488
LOCUS PQ557604 7502 bp RNA linear VRL 15-JUN-2025
DEFINITION Norovirus GII isolate KM G2-140 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PQ557604
VERSION PQ557604.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7502)
AUTHORS Xu,S.
TITLE Direct Submission
JOURNAL Submitted (04-NOV-2024) Digestive System Department, The Kunming
Children's Hospital, No. 288 Qianxing Road, The Kunming Children's
Hospital, Kunming, Yunnan 650228, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7502
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="KM G2-140"
/isolation_source="soil"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="2022-01-01"
/note="genotype: GII"
gene <1..5079
/gene="ORF1"
CDS <1..5079
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="XJU66282.1"
/translation="ASAAAVANSNNDTAKSSSDGMFSNMAVTFKRALGARPKQPPPKE
IPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNTAFS
VPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELA
PLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMI
QRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLRPLNIL
NILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVP
VVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANE
LAMVRSIEDAVLDLEAIENNHLTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDI
VGTINSLLARIAAARSLVHRAKEELSSRPRTVVVMISGRPGIGKTHLARELAKKVAAS
LTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCD
RIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPG
QPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHER
LDEYEMQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQAL
KNIAIKKCQIVYNGGTYTLEADGKGSVRVDKVQSATVQTNNELAGALHHLRCARIRYY
VKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDE
EFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEY
LQDRDRYYEEVAIARATEEDFCEEEEGKIRQRIFRPTRKQRKEERASLGLVTGSEIRK
RNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITST
HVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLI
KRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIY
KRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKL
STKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRP
NVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTG
KLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCA
RAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDV
LAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIA
HWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPT
RPDKTEGPLVFSEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFE
TMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMR
FSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..969
/gene="ORF1"
/product="p48"
mat_peptide 970..2067
/gene="ORF1"
/product="NTPase"
mat_peptide 2068..2604
/gene="ORF1"
/product="p22"
mat_peptide 2605..3003
/gene="ORF1"
/product="VPg"
mat_peptide 3004..3546
/gene="ORF1"
/product="Pro"
mat_peptide 3547..5076
/gene="ORF1"
/product="RdRp"
gene 5060..6682
/gene="ORF2"
CDS 5060..6682
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XJU66283.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEVLWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6682..7488
/gene="ORF3"
CDS 6682..7488
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XJU66284.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGASVSSFPSTARTRSWVEDQNRSLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gcttccgctg ccgctgttgc caacagcaac aacgacaccg caaaatcttc aagtgacggt
61 atgttttcta acatggctgt cacttttaag cgggccctcg gggcgcggcc taaacagccg
121 cccccgaagg aaataccacc cagacccccg cgaccaccca caccagaatt ggtcaaaaag
181 atccctcctc ccccacccaa cggggaggat gaactggtgg tctcttacag cgccaaagat
241 ggcgtttccg gactgcctga gctcaccact gtcagacaac cggaagaaac caacacggcg
301 ttcagtgtcc ccccactcaa ccaaagggag agcagggacg ccaaggagcc actaactgga
361 acaatcattg aaatgtggga tggagaaatc taccattacg gcctgtacgt ggaacgaggt
421 cttatacttg gtgtgcacaa gccaccggca gccattagcc ttgctaaggt cgagctagca
481 ccgctctctt tgttctggag gcctgtatac accccccagt atctcatctc cccagacact
541 cttaggagat tacatggaga gtcattcccc tacactgcat ttgacaacaa ttgctacgcc
601 ttttgttgct gggtattaga cctaaacgac tcatggctaa gcaggagaat gattcagagg
661 acaacaggct tcttcaggcc gtaccaggat tggaacagga aacccctccc cactatggat
721 gattccaaat taaagaaggt agccaacata ttcttgtgca ctttgtcttc actattcacc
781 agacccatta aggacataat agggaagctg agacctctta acatcctcaa catcctggct
841 acatgtgatt ggaccttcgc aggcatagtg gaatccttga tactcttggc agaactcttt
901 ggagttttct ggacaccccc agatgtgtct gcgatgatcg cccccctgct gggtgactat
961 gaattgcaag gacctgagga ccttgcagtg gaactggtcc cagtagtgat gggggggata
1021 ggtttggtgc taggatttac caaagagaaa atcggaaaga tgctatcatc cgctgcatcc
1081 actttaagag cttgtaaaga ccttggtgca tacggactgg aaatcttaaa actggtcatg
1141 aagtggttct tcccaaagaa agaggaagca aatgaactgg ctatggtgag gtccatcgag
1201 gacgcagtgc tagacctcga ggcaattgaa aacaaccact tgaccaccct actcaaagac
1261 aaagatagct tggcaaccta catgagaact cttgaccttg aggaggagaa agccagaaaa
1321 ctctcaacca aatctgcttc acccgacatt gtaggcacta tcaactctct tctggcgaga
1381 atcgctgctg cacgctccct ggtgcaccgg gcgaaagaag agctctccag caggccgaga
1441 accgtcgttg tgatgatatc gggaagacca gggataggga aaactcacct tgccagggag
1501 ctggccaaga aggtcgcggc ctccctcaca ggggaccagc gtgtgggcct tatcccacgc
1561 aatggtgtcg accattggga cgcatacaag ggcgaaagag ttgtcctatg ggacgactat
1621 ggaatgagca accccatcca cgacgccctc aggttgcagg agcttgctga cacttgcccc
1681 ctcacgctaa attgtgacag aattgagaac aaagggaaag tctttgacag tgatgccata
1741 attatcacca ccaatctggc caacccagca ccgctggact atgtcaactt tgaagcgtgc
1801 tcgagacgta ttgatttcct cgtgtacgca gaagcccctg aggtggagaa ggcaaagcgc
1861 gacttcccag gtcaacctga catgtggaag aacgctttca gtcctgactt ctcacacata
1921 aaactgtcat tggctccaca gggtggtttt gacaagaacg gcaacacccc gcacggaaaa
1981 ggggtcatga agaccctcac cactggctcc ctcatcgccc gagcatcagg gttactccac
2041 gagaggctag atgaatatga aatgcagggc ccagccctca ccactttcaa ctttgaccgc
2101 aacaaggtac ttgcttttag acagcttgct gctgaaaaca agtatgggct gatggacaca
2161 atgagagttg gaaaacagct caaggatgtc aagaccatgt cagacctcaa acaagcactc
2221 aagaacatcg cgatcaagaa gtgccagata gtgtacaatg gtggaaccta cacacttgag
2281 gctgatggca agggtagtgt gagagttgac aaagtgcaaa gtgccactgt gcagaccaac
2341 aatgaactag ccggtgccct acaccaccta aggtgtgcta gaatcaggta ctatgtcaag
2401 tgcgtccagg aggcactgta ttccatcatc cagatcgctg gggctgcatt cgtcaccacg
2461 cgcatcgcta agcgcatgaa tatacagaat ctctggtcca aaccacaggt ggaagacaca
2521 gaagagatgg ccaacaaaga tggttgccta aaacccaaag atgatgaaga gtttgtcgtc
2581 tcatccgacg acatcaaaac tgagggcaag aaagggaaga acaagtccgg ccgtggcaag
2641 aagcacacag ccttttcaag taaagggctc agtgatgagg agtacgatga gtacaagaga
2701 atcagagaag aaaggaatgg taagtactcc atagaagagt accttcagga cagagacagg
2761 tactacgagg aggtggctat tgccagggca accgaagagg acttctgtga agaagaagaa
2821 ggcaaaattc ggcagagaat tttcagacca acaaggaaac aacgcaaaga agagagggcc
2881 tctctcggct tggtcacagg ctctgaaatc aggaaaagaa acccagaaga cttcaaaccc
2941 aagggaaagc tgtgggctga tgatgacagg agtgttgact acaatgagaa actcaacttt
3001 gaggccccac caagcatctg gtcgcggata gtcaactttg gttcaggctg gggcttctgg
3061 gtctccccca gtctgtttat aacatcaacc catgtcatac cccaaggtgc aaaagagttc
3121 ttcggagtcc ccatcaagca aatccagata cacaagtcag gtgagttttg ccggttgaga
3181 tttccaaagc caatcagaac tgatgtgacg ggcatgattc tagaagaagg tgcgcccgag
3241 gggaccgtgg ccacactgct catcaagaga ccaactggag agctcatgcc tctggcagcc
3301 agaatgggga cccatgcaac catgaaaatt caggggcgca cagttggagg gcaaatgggt
3361 atgctcctga caggatccaa cgccaagagt atggacctag gcacaacacc aggcgactgc
3421 ggctgcccct acatctacaa gagggggaat gactacgtgg tcataggagt ccatacggcc
3481 gctgcccgtg gaggaaacac tgtcatatgc gccacccagg ggagtgaggg agaagccaca
3541 cttgaaggag gtgacagtaa agggacatac tgtggcgcac caatcttggg cccagggagc
3601 gctccgaagc tcagcaccaa gactaagttt tggagatcat ccacaacacc actcccacct
3661 ggcacctacg aaccagccta cctcggtggc aaagacccta gagtcaaagg tggcccttca
3721 ttgcaacaag ttatgaggga ccagctgaag ccattcacag agcccagagg caaaccacca
3781 agaccaaatg tgttggaagc tgccaagaaa accatcatca atgtccttga gcaaacaatt
3841 gatccacccc aaaaatggtc atttgcgcaa gcttgtgcat cccttgacaa aaccacctcc
3901 agcggccacc cgcaccacat gcggaaaaac gactgttgga atggggagtc cttcacagga
3961 aaattggctg atcaagcctc caaggccaac ctaatgtttg aggaaggaaa gaacatgact
4021 ccagtttaca caggtgcact taaagatgag ttggtaaaga ccgataaagt ttatggtaag
4081 gtcaagaaga ggcttctgtg gggttcagat ctggcgacca tgatacggtg cgcccgagct
4141 tttggaggcc ttatggatga actcaaggca cactgtgtca cgcttcctgt cagagttggt
4201 atgaacatga atgaagatgg ccccatcatc tttgagaagc actccagata tagatatcac
4261 tatgatgctg attattcccg gtgggactca acacaacaaa gggatgtact agcagcagca
4321 ctagaaatca tggttaagtt ctctccagaa ccacacctgg cccagatagt tgcagaagac
4381 ctcctttccc ctagcgtgat ggatgtgggt gactttcaaa tatcaataag tgagggtctc
4441 ccctctgggg taccgtgtac ctcccagtgg aattccatcg cccactggct cctcactctg
4501 tgtgcactct ctgaagtcac ggacctgtcc cctgatatca ttcaggccaa ctcccttttc
4561 tccttctatg gtgatgatga gattgtaagc acagatataa agttggaccc agaaaagctg
4621 acagcaaaac tcaaggagta cgggctgaaa ccaacccgcc ccgacaaaac tgaaggaccc
4681 cttgttttct ctgaagacct ggatggcctg acatttctcc ggagaactgt gacccgtgat
4741 ccagctggct ggtttggaaa attggaacaa agttcaattc tcaggcaaat gtactggacc
4801 aggggtccca accatgaaga cccatttgag acaatgatac cacactccca aagacccata
4861 caattgatgt ccttgctagg cgaggctgca ctccacggcc cggcattcta tagcaaaatt
4921 agcaaattag tcattgcaga gttgaaagaa ggtggcatgg acttttacgt gcccagacaa
4981 gagccaatgt tcagatggat gagattctcc gatctgagca cgtgggaggg cgatcgcaat
5041 ctggctccca gttttgtgaa tgaagatggc gtcgagtgac gccaacccat ctgatgggtc
5101 cgcagccaac ctcgtcccag aggtcaacaa tgaggttatg gctctggagc ccgttgttgg
5161 tgccgccatt gcggcacctg tagcgggcca acaaaatgta attgacccct ggattagaaa
5221 taattttgta caagcccctg gtggagagtt cacagtatcc cccagaaacg ctccaggtga
5281 agtactatgg agcgcgcccc tgggccctga tctaaatccc tacttatccc acttggccag
5341 aatgtacaat ggttatgcag gtggttttga agtgcaggta attctcgcgg ggaacgcgtt
5401 caccgccggg aaggtcatat ttgcagcagt cccaccaaat tttccaactg aaggcttgag
5461 ccccagccag gtcactatgt ttccccatat agtagtagat gttaggcaac tagaacctgt
5521 gttgattccc ttacccgatg ttaggaataa tttctatcat tacaatcaat caaatgaccc
5581 caccattaag ttgatagcaa tgttgtacac accacttagg gctaataatg ctggggatga
5641 tgtcttcaca gtttcctgcc gagttctcac gaggccatcc cccgattttg atttcatatt
5701 tctagtgcca cccacagttg agtcaagaac taaaccattc tctgtcccag ttttaactgt
5761 tgaggagatg accaattcaa gattccccat tcctttggaa aagttgttca cgggccccag
5821 cagtgccttt gttgtccagc cacaaaacgg caggtgcaca actgatggcg tgctcctggg
5881 caccacccaa ctgtctcctg tcaacatctg cactttcaga ggagatgtca cccatattac
5941 aggtagtcat aactacacaa tgaatttggc ttctcaaaat tggagcaatt atgacccaac
6001 agaagaaatc ccagcccctc taggaactcc agattttgtg gggaagattc agggcgtgct
6061 cacccagacc acaaggacag acggctcaac acgcggccac aaagccacag tgtacactgg
6121 gagcgccgac tttgctccaa aactgggtag agttcaattt gaaactgaca caaaccatga
6181 ttttgaagct aaccaaaaca caaagttcac cccagttggt gtcatccaag atggtggcac
6241 cacccaccga aatgaacccc aacagtgggt gctcccaagt tactcaggca gaaacactcc
6301 taatgtgcat ctggcccccg ctgtagcccc cacttttccg ggtgagcaac ttctcttctt
6361 cagatccacc atgcccggat gcagcgggta ccccaacatg gatttggact gtctgctccc
6421 ccaggaatgg gtgcagtact tctaccaaga ggcagcccca gcacaatctg atgtggctct
6481 gctaagattt gtgaatccag acacaggtag ggttttgttt gagtgtaaac ttcataaatc
6541 aggctatgtt acagtggctc acactggcca acatgatttg gttattcccc ccaatggtta
6601 ttttaggttt gattcctggg tcaaccagtt ttacacgctt gcccccatgg gaaatggaac
6661 ggggcgtaga cgtgcactat aatggctgga gctttctttg ctggattggc atctgatgtc
6721 cttggctctg ggcttggttc ccttatcaat gctggggctg gggccatcaa ccaaaaagtt
6781 gagtttgaaa ataacagaaa gttgcaacaa gcatccttcc aatttagcag caatctacaa
6841 caggcttcct ttcaacatga caaagagatg cttcaagcac aaattgaagc cactaaaagg
6901 ctacaacagg aaatgatgaa agtcaagcag gcaatgctcc tggagggtgg gttctctgag
6961 acagatgcag cccgcggggc aatcaacgcc cccatgacaa aagctttgga ctggagcggg
7021 acaagatact gggctcccga tgctaggact acaacatata atgcaggccg cttttccacc
7081 ccccaaccat cgggggcact gccaggaaga gctaatctca gggatgctgt ccctgctcgg
7141 ggttcctcta gtaagtcttc taattcttct actgctactt ctgtgtactc aaatcaaacc
7201 acctcaacga gacttggttc tacagctggt tctggcgcca gtgtctcgag cttcccgtca
7261 actgcaagga ctaggagctg ggttgaggat caaaatagga gtttgtcacc tttcatgagg
7321 ggggcccaca acatatcgtt tgtcacccca ccatctagca gatcctctag ccaaggcaca
7381 gtctcaaccg tgcctaaaga gattttggac tcctggactg gcgctttcaa cacgcgcagg
7441 cagccactct tcgctcacat tcgtaagcga ggggagtcac gggtgtagtg tgaaagacaa
7501 at
//