Typing tool
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Typing tool
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Complete norovirus genomes
| PQ507186 | GII.7 | |
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| GII.P7 |
ORF1: 3..5096
ORF2: 5077..6699
ORF3: 6699..7458
LOCUS PQ507186 7458 bp RNA linear VRL 05-NOV-2024
DEFINITION Norovirus GII isolate IC_97_GII7P7 nonstructural polyprotein (ORF1)
and VP1 (ORF2) genes, complete cds; and VP2 (ORF3) gene, partial
cds.
ACCESSION PQ507186
VERSION PQ507186.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7458)
AUTHORS Oh,S., Kim,J., Lim,C., Eyun,S.-I. and Doh,H.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2024) Department of Disease Research, Incheon
metropolitan city, 471, Seohae-daero, Jung-gu, Incheon 22320, South
Korea
COMMENT ##Assembly-Data-START##
Assembly Method :: MultAlin v. MARCH-2000
Sequencing Technology :: IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7458
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="IC_97_GII7P7"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="South Korea"
/collection_date="2024-01-20"
/note="genotype: GII.P7_Gll.7"
gene 3..5096
/gene="ORF1"
CDS 3..5096
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="XIQ78902.1"
/translation="MKMASNDATAALGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPSSSQNCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ANTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKS
VKTLEDLKAALRDVKFNECEIIYKSSKYRVSSNGKGSVSVDKIADNASQTVNEVHSAL
LRLRQARARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETHDVNEPEK
ETAQGGWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SNIKKRRPDDFQPKGNLWADDTRSVDYNEKLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGIKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSVLVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 3..1004
/gene="ORF1"
/product="p48"
mat_peptide 1005..2102
/gene="ORF1"
/product="NTPase"
mat_peptide 2103..2621
/gene="ORF1"
/product="p22"
mat_peptide 2622..3020
/gene="ORF1"
/product="VPg"
mat_peptide 3021..3563
/gene="ORF1"
/product="Pro"
mat_peptide 3564..5093
/gene="ORF1"
/product="RdRp"
gene 5077..6699
/gene="ORF2"
CDS 5077..6699
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="XIQ78903.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMCDGHAGG
MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
IRNNFFHYNQGNDPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
gene 6699..>7458
/gene="ORF3"
CDS 6699..>7458
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="XIQ78904.1"
/translation="MASAFFANLAGGIASNGISSLINAGANAINQKVEFDYNKQLQNA
SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
TRYWAPGAMRTTGYSGTFTHLPPMQSASYVNNQNRQLFKVDPSPSSSSGSSVSSVKTQ
STALSGTSRVGSSSQSTLSTRPSSRTSDWVRTQNERLSPFMNGALQTAYVTPPSSRAS
SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRG"
ORIGIN
1 gaatgaagat ggcgtctaac gacgctaccg ctgcccttgg cagtcaaaac tctgtcaatg
61 acagtaacaa cgccacccct tctaacaaag aagaggttgg tgcattctcc aacatcaaag
121 ttggatttaa gaaaatgctg ggcgccgtac ccaaaggtac caaagcgccc agcagtagtc
181 aaaattgccc cacagttaag atcgggccta aaacgctaac aatcccccct gagcccccaa
241 acggtgagga tacagtacaa tttgatgcaa agtcagaaac tataattggg ctaccagact
301 tgacaacggt gcaaaacgaa cacgaaaaca ccccatatac tgtccctcca ctaagtgaga
361 gggagcacag accggccact gaaccgcttc ctggcacaat attggagatg tgggatggtg
421 aattctacca ttactccgtg tacgtcagcg atggcaaagc tctgggagtc cacaaaccac
481 ctgcggccat aagcctcgcg acgatagagc tcacccccat atcactctac tggaggcccg
541 tttacactcc caactactta gtctctccag acacattaaa gggcctcgct ggtgagaagt
601 tcccctacac ggccttcagt aataactgtt acaatttctg ttgttgggtg cttgagctca
661 acgacacgtg gcttaacaga agatgcattt ctagaactac cggcttcttc aaaccatacc
721 agtcttggaa tagaaaacct ctcccaactg ttgatgatgg aaagatcaaa aaggtggcca
781 atgcgatcct ctgtgcactc ggttcgctgt tttcaaaacc aattaaagac ctactaggta
841 aactcaaacc attgaatctg ctacacttgc tcgcgtcatg tgattggacg tttgcaggca
901 tagtggagac agtcatctta atggcggaac ttttcaatgt gttctggacc ccaccagatg
961 tctccaattt tatagcttcc ctgataggtg attttgaatt gcaagggcct gaagacctgg
1021 ccgtggagct cgtccccgtg gtcatgggtg gcatagggat ggttctcggc ttcactgctg
1081 agaagattgg ccgcatgctg tcgtccgctg catcaacact gcgggcatgc aaagacctag
1141 ggaactatgc ccttgacata ctcaaattgg tcatgaaatg gttcttcccg aagaaggaag
1201 agaaggctga gatggaaacc ctgagggcga ttgaagacgc cgtccttgat atggaagcta
1261 tagggaataa ccatctcacg accctcctca aggacaaaga cagcctcaca gctttcatga
1321 agaccttgga tctagaagag gagaaggcga ggaagctgtc caccaaatca tcctcaccgg
1381 acatagtcgg caccatcaac gccatattag ctaggatagc tgccgctaga tcccttctac
1441 ataaggccaa agaagagatg ttcagtagga tcagaccagt ggtcgtcatg atctcaggca
1501 gacctggcat tggaaagacc cacatggcta gacacttggc caagagcatc gccaatacca
1561 tgagtggtga tcagagagtc ggactcgttc cacgcaacgg tgtcgatcat tgggacgcct
1621 acagaggaga gagggtggtc ttgtgggatg actacggtat ggggagccct gtcaaagatg
1681 ccctgacact gcaagagttg gccaacacat gtccagtcac tttaaattgt gacaggattg
1741 agaataaggg aaagatgttt gatagtgatg tcatcataat cacgaccaac ttagtcaacc
1801 ctgcacccct cgactatgtg aacttcgagg cgtgttctag gagagttgac ttcctggtct
1861 atgcagagtc accagaaatt gaaaaggtca agagagactt ccctggccag cctgacatgt
1921 ggaaggacca ttttaaacca gacttttccc atatcaagtt gactctagcc ccccagggtg
1981 ggtttgacaa aaatggcaac accccacacg gcaagggcac catgcggtcc ttaactcagg
2041 ggtccctaac tgcgagagtc gcaggccttg tccatgagag gagggacgag ttccaactcc
2101 aaggaaacga cctccagaca tacaactttg acaccaatag agtctccgca ttcagaaaac
2161 tggctgcaga taacaagtat ggcattatgg agacgatgag agttggtgca gcgctcaaga
2221 gtgtgaagac cttggaagat ctcaaagctg cattgaggga tgtgaaattt aatgagtgtg
2281 aaataattta caagagctct aagtaccgag tctcttccaa cggcaaaggc tcggtctctg
2341 ttgacaaaat tgcagacaat gcttcccaga ctgtgaacga ggtgcattca gcacttctta
2401 gactcaggca agcaagggcc aggtattaca tcagctgctt ccaagatctc gtttacactc
2461 tcatacaggt tgccggggca tcattcgtcg tcagtaggat ctctagaagg ttctgctggg
2521 aaaggtgggt aaaaccgacc gagacccatg acgtgaatga gcccgaaaag gaaacagccc
2581 agggtggatg ggagattgag cccaaggaca cagaaccaga aggcaagaag ggcaagaaca
2641 agaaaggaag gggcaagaaa cacacagcct tttctagcaa aggcctgagt gatgaagagt
2701 atgatgagtt caagagaatc agggaagaaa gaaacggaaa gtactccatt gaggagtacc
2761 tgcaggaccg agaccgttat tatgaagagg tggcggttgc tcgggcgaca gaggaggact
2821 tctgtgaaga ggaagaagcc aagataagac aaagaatttt ccgcccgact aggaaacaga
2881 ggaaggagga aaggggcgtg cttggcttgg tcactggctc aaatatcaaa aagaggagac
2941 ccgacgactt ccaaccaaag ggcaacctat gggcagatga caccagaagt gtagactaca
3001 atgagaagct tgattttgaa gcacctccaa gtgtttggtc aagaatagtc ccattgggca
3061 ctggttgggg gttttgggtt tcatccaacc ttctgatcac aacaacacac gtcctgccca
3121 aagggatcaa ggaactcttt ggagttgaga tcaaacaaat ccaagttcat aagtctggag
3181 agttttgcag gtttaggttt ccaagaccca tcaggccaga tgtcacagga ctcgtgctgg
3241 aggaaggcgc cccagagggc actgtctgtt ctgtactcgt aaaaagacct acaggtgaaa
3301 tgatccccct tgcagtgagg atgggtacgc acgcatccat gaaaatacag ggcagaacag
3361 ttggtggcca gatggggatg ctcctcacgg gagcaaacgc gaagaacatg gatctcggca
3421 ctggtcctgg tgactgcggt tgcccctaca tctacaaacg tggcaacgat atagttgtcg
3481 cgggtgttca caccgcagca gcccgtgggg gcaacactgt catatgtgcc acccaagggc
3541 aagacgggga agcggtcctt gagggaaatg aggaccttgg cacctactgt ggtgccccaa
3601 ttctgggtcc tggcaaggcg cccaaactca gcacgaagac caaattctgg cgctcatcac
3661 cagacgccct gccacctggt acatacgaac ctgcttacct aggtggcaaa gaccctagag
3721 tggaaaaagg tccctccctg cagcaagtta tgagagacca gttgagaccc ttcacagagc
3781 ccaggggcaa accgcccaga cctgcagtcc tggaggaagc taaaaagaca gtgatgaatg
3841 ttttagaaca aaccattgac cctgccaagc catggtccta ctcccaggca tgtgcctcac
3901 ttgacaaaac cacttctagt ggtagtcccc atcatgtcaa gaaaaatgac cactggaatg
3961 gggagtcctt cactggtcca cttgcagatc aggcatctaa agctaacctc atgtatgaac
4021 aggccaaaca tgtgcagccc gtgtacacgg cagcgcttaa agatgagctt gttaagactg
4081 acaagatcta caagaagata aagaagaggc tcctatgggg gtcggacctt ggcacaatga
4141 tcaggtgcgc cagggctttt ggcggtctca tggacagcat gaaggcaagt tgtatagctc
4201 ttccttgcag ggtagggatg aacatgaatg aagatggccc catcatattc gacaaacact
4261 ccaagtacag gtaccactat gatgctgact attctaggtg ggactcaacc caacagagga
4321 gcattctctc tgccgctatg gaagtaatgg tgcggttttc tgccgaacca gaactggcac
4381 aagtggttgc agaggatctt ttggctccta gccagcttga cgttggtgac tttgtcatct
4441 cagtccagga aggtctacca tcaggagtcc catgcacatc acaatggaat tcaatagcac
4501 actggatcct gactttgagt gcaatggcag aagtatcagg tctctcacca gatgtagtcc
4561 aagctcactc ctgtttttca ttttacgggg acgatgagat cgtcagtact gacatcaatc
4621 tcgaccctat gaagttgaca cagaaactca gggagtatgg tctggtcccc acccggcctg
4681 ataaaactga aggccccctc gtcataactg aagacctcac cggcctgaca ttcctccgta
4741 ggtcgattgc tcgggaccca gctggttggt ttgggaaact ggaccaagac tcaattctca
4801 gacagctata ctggacaagg gggcctaacc atgagaaccc gtatgagagt atggttcctc
4861 attctcagcg ggctacacag ctcatggccc ttcttggtga ggcctcgctg catggtccac
4921 agttttacaa gaaagttagc aagatggtca tcaatgagat taagagtggt ggtctggagt
4981 tttatgtgcc cagacaagag gccatgttca ggtggatgag attctctgac ctcagcacat
5041 gggagggcga tcgcaatctt gctcccgaag gtgtgaatga agatggcgtc gaatgacgca
5101 gctccatcta atgatggtgc agcaggcctc gtgccagaga tcaacaatga ggtcatgccc
5161 cttgagcccg tggctggtgc atcgctggcg acaccagttg tcgggcaaca aaacataatt
5221 gatccctgga taagaaataa ttttgtacaa gctcctgcag gtgagtttac agtttctcct
5281 agaaattccc ctggtgaaat tttgcttgat ttggagttgg gccctgagtt gaacccctat
5341 ctcgctcatc ttgcccgaat gtgtgatggg cacgctggtg gcatggaagt gcaaattgtg
5401 ttggctggga acgcgttcac agctggcaag atcatatttg ctgccatccc tccagggttc
5461 ccatatgaaa atttgtcacc ttcacaaatt acaatgtgcc cccatgttat aattgatgtt
5521 agacaattag agccagtctt attgcctatg ccagatatca gaaataattt cttccattac
5581 aatcagggta atgatccaaa attaagactg gtagctatgc tctatactcc tttaagggct
5641 aataattctg gtgatgatgt gttcacagtt tcttgtaggg ttctcactaa accatcacct
5701 gattttgaat tcacattttt ggtcccccct acagttgaat ccaagaccaa gcaattcaca
5761 ttgcccatcc ttaaaatatc agagatgacc aactcaagat tcccagtgcc ggtggaaatg
5821 atgtacacag caaggaatga gaatcaagtt gtccagccac agaatggtag ggtcacactc
5881 gatggcgagc tattgggcac cacgcccttg ttggctgtca acatctgcaa attcaaggga
5941 gaggtcatag ctaagaatgg agatgtgaga tcctatagga tggacatgga aatcaccaac
6001 actgatggca ccccaattga ccccactgaa gatacacctg gtcccattgg atcacctgac
6061 tttcaaggta tactctttgg cgttgccagt cagcgcaaca aaaatgagca gaatcctgct
6121 accagagccc atgaagccaa catcaacact ggtggggacc aatatgcccc caaattggcc
6181 caagtgaaat tcttttcaga gtcccaggat ttcgaggtgc accaacccac agttttcacc
6241 ccagttggtg tggcaggtga tacttcccac cctttcagac agtgggtctt gcctcgatat
6301 ggtggacatc tcaccaacaa cactcacttg gctccagcag tggcccccct attcccaggt
6361 gagcagattc tgttctttag atcacaaata cctagttcag gcggccatga attgggttac
6421 atggactgcc ttgtcccaca ggaatgggtc caacacttct accaagaagc tgccacagct
6481 cagtctgagg tggcactcat aaggttcatt aaccctgaca ctggcagagt cctctttgag
6541 gccaagctac acaagcaagg ctttataact gtggctcaca ccggtgacaa cccaattgtc
6601 atgccaccaa atgggtactt cagatttgaa gcctgggtca atcagtttta ctcactcgcc
6661 cccgtgggaa ctgggaatgg gcgtaggagg atccaataat ggccagtgct ttctttgcaa
6721 atttggcagg gggcattgcc tccaatggaa tcagttcact cataaatgct ggggctaatg
6781 ctattaacca aaaggttgag tttgattata ataaacaact ccaaaatgca tccttctccc
6841 acgataaaga aatgctccaa gcccaaattg aagccactaa acgtttgcaa caagagatga
6901 ttgacataaa acaaggggtg ctgacggctg cgggattctc tcccacggat gccgcgaggg
6961 gttctgttgg cgcgccaatg acaaaattag ttgattggag tggtaccaga tattgggctc
7021 ctggtgccat gaggacaaca ggatattcag gaacttttac tcacttgcct cctatgcagt
7081 ctgcttcata tgttaataat cagaatagac agctttttaa agtagatcct tctccttctt
7141 cttcaagtgg ctcttcagtt tcttctgtta aaacacaatc aactgctctc tccggcactt
7201 caagggtggg ctcttcatct cagtcaaccc tgtcgaccag gccgagctca aggacatctg
7261 attgggtacg tacccaaaat gaaaggttga gccccttcat gaatggagcg ttgcaaacag
7321 cgtatgtgac gccaccatct agtagggcat caagtgtcag cacagtctcg accgtgccga
7381 aagaggtttt ggactcctgg acgcctatgt ttaacactca caggcagccg ctcttcgccc
7441 acttgcgtag gcgagggg
//